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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2193420 |
| Transcript ID | Lj6g3v2193420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356557593|ref|XP_003547100.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | – | – | |
| PANTHER | 17 | 97 | 81 | 5.60E-203 | – | |
| PANTHER | 17 | 97 | 81 | 5.60E-203 | – | |
| SUPERFAMILY | 40 | 101 | 62 | 1.62E-12 | ||
| Gene3D | 43 | 100 | 58 | 4.10E-14 | ||
| SMART | 46 | 135 | 90 | 4.70E-07 | ||
| ProSiteProfiles | 47 | 123 | 77 | 12.684 | ||
| CDD | 50 | 127 | 78 | 4.53E-15 | – | |
| Pfam | 51 | 99 | 49 | 2.30E-11 | ||
| PANTHER | 117 | 533 | 417 | 5.60E-203 | – | |
| PANTHER | 117 | 533 | 417 | 5.60E-203 | – | |
| SMART | 145 | 219 | 75 | 1.70E-12 | ||
| Gene3D | 146 | 220 | 75 | 1.70E-14 | ||
| SUPERFAMILY | 146 | 221 | 76 | 4.24E-13 | ||
| ProSiteProfiles | 146 | 214 | 69 | 14.844 | ||
| CDD | 148 | 215 | 68 | 2.93E-16 | – | |
| Pfam | 150 | 213 | 64 | 1.10E-11 | ||
| Gene3D | 296 | 352 | 57 | 3.30E-13 | ||
| SMART | 297 | 373 | 77 | 5.20E-08 | ||
| ProSiteProfiles | 298 | 365 | 68 | 14.152 | ||
| SUPERFAMILY | 299 | 374 | 76 | 1.41E-12 | ||
| Pfam | 300 | 353 | 54 | 3.90E-10 | ||
| CDD | 300 | 369 | 70 | 6.54E-15 | – | |
| SUPERFAMILY | 382 | 467 | 86 | 3.17E-14 | ||
| Gene3D | 388 | 463 | 76 | 7.20E-16 | ||
| SMART | 389 | 464 | 76 | 3.40E-11 | ||
| ProSiteProfiles | 390 | 463 | 74 | 15.892 | ||
| Pfam | 392 | 456 | 65 | 9.20E-13 | ||
| CDD | 392 | 457 | 66 | 5.90E-18 | – | |
| MobiDBLite | 593 | 662 | 70 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj6g3v2193420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2193420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.