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| Field | Value |
|---|---|
| Gene ID | LotjaGi0g1v0000500 |
| Transcript ID | LotjaGi0g1v0000500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G57510.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P35336|PGLR_ACTDE Polygalacturonase; TrEMBL-Plants: tr|A0A151T8E5|A0A151T8E5_CAJCA Polygalacturonase; Found in the gene: LotjaGi0g1v0000500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr0:1152494..1157753) extracted from Lotus japonicus Gifu genome v1.2.
GCTAATTAAACTAGCCATAGTCATTTTCCTCAACCAGCATTCTCCAACTTTCAAAGAACATTTATTCTCATCATTGAAGC ACAAAAAGAAAAAAGTTATGATGACCCTCCACAGATATCTCTCATACCTTATCATCCTAATTTCTTTTGTTGCTTGTTGT AGCTCCTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGGATTCGCCTAACATTGATGATGGTGGGACAACATTTAAGGG CTTCATCAAGCAAACAACAGATAATATGTTGAGATTGAGGAGTTCAGAAAAGTTGGGTGACACTTCTTCGCTTAAAACGG TTAACGTCAATGATTATGGAGCTGAAGGAGATGGTCACACTGATGATACACAAGTATGTATATATATGCATCAAACCCAA ACTAATATTACTTATATAACCTTTATTTATTTATTTTTTCAATTTTTTTATTTTACTTGGAAGATATATAATAGTTGTGT TTTGTGGTGTGGACTAACAAAAATATGGTTCACAAGTTAAAATGAATTTTCCGTAATACTTTTTTTTAAGGGAAATGGTT TTTTACACAACCATAAAACGCACGACTTTGCACAACCAACGCAATTTCAAGTTTTAATGTTGGGCATCATTTTTTTTAAT ACATTATTTGAAATTTTGATTTGTCAAAATTAACTCTATTGATGGTGTTGCGTCGTGGGCTTATGAGTGGATTGAAATAA CAATATTCTATTTTAAAAGTCTTCTCTAGAGCACATTATAAATAATATATGTGTATTAAATGTTAGTTATAAAAATATGG TTTATGAGTTGATCAATTTTTTTAAAACATTAACAGCATATTTTAAAGAACTTATAAGAACTTATACTGAGTATATTTTT TATCATATTAAAAATATAATTTATGGGTGAAATCCAGCATAGAAATTTTATTTTATAACAAATAAAAGAATGATTTATGA TGGATCGGTTTTTAACAAAATCCTATCTGAAATAGTTGTGTCTAGCAATTTAAGAAAATTAAATCACAATATTTGTACTC ATAATATATGGGTTATTTCAGGCATTCAAGAAGGCTTGGCAAGTAGCATGCTCATCTAGTGGAGCAATTCTTGTGGTGCC AAAGAAGAATTATCTTCTCAAGCCAATCACATTCTCTGGCCCTTGCAAATCCAACACCGCAGTCCAGGTTAGCTAAGAAT TATATATTAATTTTGTGCAAATTTCGTGGTACTCATAATATTTTTTTGGGGTGATACCCACATTAAGTTATTTAATAGAT TATGACTATGTTGTTCAACGTAAATTTTACATTTTTAAATTTTATTTTACTTTTCAATTAACTCTATTTCATATAATTCA TTTTTTAATGAAAAACGGATGAGTAGTGAAGACGAACGATGATGCATGGTGGCGATGCGCGTCAAATAACCATATTTGAC GGAAGAATAAATGTTAACAAACACAACAAACAAATTTCGATCTCTGGCAATAGAGTACTACATTACTATGATATAATAAA ATCGAACTTTTGAACGTATATATAAGTTTTTACAACTAATTTAACTCATTTTGGGTACCACAACAAATACCTTAATTAAA CTTATAATTGTTGGACATTTAAAGGAGTAGCTTAGATATATAATAACCATGTGATATTTTTTATATATGAATTTTATTTT TAGATCTCTGGAACCCTTCTGGCATCAGATAACCCATCTGATTACAGTGAAGACCCCGCACACTGGCTTATGTTTGACAG CGTTCGGAAACTATCTGTCAATGGTGGTGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGA ACAAAAAGCTTGTAAGTTATCCGAAAGTGTTACATACTATTCGCTCACACCATTTTTGCGGTGACACGAGCGGGCGATAC ATAAAAATTGCGCTTGTCATACAAGATGGTCAGAAATTACTACAAATTGTAAATATTACAAGTGTTACCATAAAAGTGGT GTCCAGCGATCATTTTCATATACGAAAACACAATTTCTTATTTATGTTTTTTTAACACAAAATCATAATCGCTAACCATT CTTTAACGTTTCTCCATTTTGCAGCCTTGCAAGAATGCCCCTACGGTATGTCTTGCTCTCTTACAATATTGTTTCTATCA ACCATGCATTTTCTTTTAAAATCATGGCTAACTCTCTCGTGCTTTGTTGAGTGTACCAAAGTAATTTGTTTTCAGGCTTT ATTATATATTATTGAAGTGAATTATGCTCATTTTGTTGAGTCGTTTATAATATCGACTACACATTTAATATAAGTTTTTA CTTAAAAAAAACTTTCTCGTATTAATTAAAGGTTTTCAAAGCTCAATATTATTATTATTTGTCGTGAAATAACATTATCA CACTAAACAATTATTAATATGTTAATGTTATGAAAGGACAATAATCACAAGAGTGCATGGAAAATTTACTTAAAATCAAT TCTTACATATACAGGAACTTTCACTGCATTTTCAGTTTCCATTTTCACTTTTAATAAAGTGTAAATGAAATAAGTGTTTA CTTTTGTAGACGCTGACATTTTACAAATGCCGCAACTTAGTAGTTGGGGATTTGACGATAAAGAATGGCCAGCAAATTCA TGTTTCGTTCCAGGATTCCCAGGGTGTTAAAGTTTCTGATCTCACTGTGACAGCACCAGGCGAGAGTCCAAACACTGATG GAATTCACGTCACAAATACACAAAACATCCAAATCTCAAGCTCCAATATTGGAACTGGTAATTTAACTCATTTCCTATTT TATGAGAATAGTAAAAAAAAATTGATAACGAAAGTTTTATAGCTAGGTTTCTCTTTCTTCAACACTCTTTGGTTTCAACT TTCAGTTAAAATTTTGCAGGAGATGATTGTATATCAATTGTAAGTGGATCCAGGAATTTACAAGCCACAGACATAACCTG TGGACCAGGCCATGGTATTAGGTAATTTCTTTAAACTTCCATACAAATACCTTCTTTTCCTACCCGGAGCCATAATTAAT TTTGTATTAAGGGGTCAAGATCAAAGAGCATATAGAATTTTAAGTACAACATGAAAAAAATCTCTCTCTGTGCCCGTGCG TGTGGTATGTGGCGTATGTTTGTGCGCGTGCAGCGTACGCTCGTGCAGCATGCTTATGAAGTAGAAGTGCAGGTATATTG CATGTTTTAATGTTCTGTCACCAATTTAATTTCCAAAATGTTATTATTGATAGTGATTCTTCATTGTCTGTGGATTAGAC ACTGAATGGTGATAAGCAACATTGAAAACTTTTGCAAGAGTTTAATCACATTGATTGTTTGATGTCTTTAGTTAATTGTG TAGGGGCTAGTAAAAAAAACTAAAATTGCGTAGGGTGGTTCATGTTTGCGGAAAGATAATTCTTTTACAGATTATATTTT GCTAACCAAGGGTGCGGATGGAATTAATGATGTCATTTGGGTCTTATATCACTCATTGTACACGCATTTTTACGAGGAAG TTATTCTTATAGTTTTTATAGGGTCCCCTAATGTGCACCAATTGCTAAGGGGTGCAAAATTACACCTAGTTTTTAATTTC AATAAATTTTGTTTTTGAAAAAGAAAAGGTTTTTTTTAAGGTGAAAAAGAAAAGTTAGGGGTGCACGTACACATCTACAA TCTAATTTTTTCTATACATATAATGAATATCCAATGCTACAATAATAAACGATAAAAAATTTGGGGGGCCATGGCCGCAT TGGGCATCCATGTGGCTCATCCACGGTTCCTACCTGTATACACATCCAATTTAATTAAGAATTAATTATTGTTAAAACCT GTTATACATGTTAATGATTCATTTAAAATTTGTTTTTATTTTTTGAAACAATAATCTCAGCATCGGAAGCTTAGGAGCTG GAAATTCAAAGGAATTTGTTTCAGGAATAACAGTGAACGGAGCTAAATTTGTTGGAACCACAAATGGAGTAAGAATTAAA ACATGGCAGGTAATTTATTTTTAAAACTTTTAATGAATAATTTTAGCCTCCTTGGCCCAACCCACTTAATAATATCTGTA CATGTAATTATTCAATGCTCAAATCCCATTTTGGACTATATATATTGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAA GTTTAAGAATATTCAAATGGACAATGTGACCAACCCCATAATAATAGATCAAAACTATTGTGACCAAGCGAATCCGTGCG AAAAACAGGTAATTGAAGAAACTTCAGCTATTGCTTGCAACGTTTTGCTACTACTAGAGAAATTTGTTATGTATTTGATT TTGTCTACCTTAAAACCGAAAAATGTATTTTAACAAAGTGTAGAGAAATTTGTTATGGATTTGATTTTGTCTATTTTAAA ACAGGAAAATCAGCACAATGTGAAAAAAAAATATTATACATGATCAACTTCTAATACTTTTCTATTACATAAAATTGCCC AAATTACATGTTGAGATGATCATAATATAGTGCCCAGTGGTGATAGGTAAACTAGTAAACAGTGGTGACCACTTTTCACA TCTCACTTTTGTAAGATTTTTTACACTTATAATATGGACACCGAACAGTAGAAAAAGGAAATCTAACTAATTTGAACATA TGTCAAAATATTATTATATTCACTTAAGCTAAAGTGCTTTTATATTTCCTCTTGTAAAAGAAACTAGTACTTTTACCCAA AATATATCTTGGGTTGCAACTCCTATTTTATATATGTACATATCTAATCTAAATAATGTGTATGATTGGTTAATTAATGT CCTTGCAGAACTCCGCGGTTCAGATTCGTAATGTGATGTACCAGAACATAAAAGGCACAAGTGCATCTGATGTGGCTGTG CAATTTGATTGCAGCGAGAACTCTCCATGCGAGGGGATAGTATTGCAGAACATAAACCTGCAACTTGAAGGTGAAGGAGA GGCCAAGGCTTCATGCAACGATGTTAAATTGTCCTACCGAGGAGATGTTAGCCCTCGTTGTAGCACATAGAAACAAGAAA TAGAACAGGCACTAAATGCTGCATGGAAAAATAAAACCTCAAGTATATGAAATAATAGAAGGATACATGATACATGTTTA ATTAGTAATTGCTTTGTACATATGCCCAACCAATAAATTTGATTGAATTGTAGCTTGATTCTTCACATAAATGATTGTGA AAGAAAACTACGTACTACTAATATGTATAATATTTGTACCATATTCAATAAATGAAGTTT
CDS sequence (LotjaGi0g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACCCTCCACAGATATCTCTCATACCTTATCATCCTAATTTCTTTTGTTGCTTGTTGTAGCTCCTTGCAAGAGGA CCCACTTAGTTCAATTGTTGAGGATTCGCCTAACATTGATGATGGTGGGACAACATTTAAGGGCTTCATCAAGCAAACAA CAGATAATATGTTGAGATTGAGGAGTTCAGAAAAGTTGGGTGACACTTCTTCGCTTAAAACGGTTAACGTCAATGATTAT GGAGCTGAAGGAGATGGTCACACTGATGATACACAAGCATTCAAGAAGGCTTGGCAAGTAGCATGCTCATCTAGTGGAGC AATTCTTGTGGTGCCAAAGAAGAATTATCTTCTCAAGCCAATCACATTCTCTGGCCCTTGCAAATCCAACACCGCAGTCC AGATCTCTGGAACCCTTCTGGCATCAGATAACCCATCTGATTACAGTGAAGACCCCGCACACTGGCTTATGTTTGACAGC GTTCGGAAACTATCTGTCAATGGTGGTGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAA CAAAAAGCTTCCTTGCAAGAATGCCCCTACGACGCTGACATTTTACAAATGCCGCAACTTAGTAGTTGGGGATTTGACGA TAAAGAATGGCCAGCAAATTCATGTTTCGTTCCAGGATTCCCAGGGTGTTAAAGTTTCTGATCTCACTGTGACAGCACCA GGCGAGAGTCCAAACACTGATGGAATTCACGTCACAAATACACAAAACATCCAAATCTCAAGCTCCAATATTGGAACTGG AGATGATTGTATATCAATTGTAAGTGGATCCAGGAATTTACAAGCCACAGACATAACCTGTGGACCAGGCCATGGTATTA GCATCGGAAGCTTAGGAGCTGGAAATTCAAAGGAATTTGTTTCAGGAATAACAGTGAACGGAGCTAAATTTGTTGGAACC ACAAATGGAGTAAGAATTAAAACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTAAGAATATTCAAATGGA CAATGTGACCAACCCCATAATAATAGATCAAAACTATTGTGACCAAGCGAATCCGTGCGAAAAACAGAACTCCGCGGTTC AGATTCGTAATGTGATGTACCAGAACATAAAAGGCACAAGTGCATCTGATGTGGCTGTGCAATTTGATTGCAGCGAGAAC TCTCCATGCGAGGGGATAGTATTGCAGAACATAAACCTGCAACTTGAAGGTGAAGGAGAGGCCAAGGCTTCATGCAACGA TGTTAAATTGTCCTACCGAGGAGATGTTAGCCCTCGTTGTAGCACATAG
Protein sequence (LotjaGi0g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTLHRYLSYLIILISFVACCSSLQEDPLSSIVEDSPNIDDGGTTFKGFIKQTTDNMLRLRSSEKLGDTSSLKTVNVNDY GAEGDGHTDDTQAFKKAWQVACSSSGAILVVPKKNYLLKPITFSGPCKSNTAVQISGTLLASDNPSDYSEDPAHWLMFDS VRKLSVNGGGTINGNGNIWWQNSCKRNKKLPCKNAPTTLTFYKCRNLVVGDLTIKNGQQIHVSFQDSQGVKVSDLTVTAP GESPNTDGIHVTNTQNIQISSSNIGTGDDCISIVSGSRNLQATDITCGPGHGISIGSLGAGNSKEFVSGITVNGAKFVGT TNGVRIKTWQGGSGSASNIKFKNIQMDNVTNPIIIDQNYCDQANPCEKQNSAVQIRNVMYQNIKGTSASDVAVQFDCSEN SPCEGIVLQNINLQLEGEGEAKASCNDVKLSYRGDVSPRCST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 20 | 20 | 5.0 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 6 | 440 | 435 | 1.2E-234 | – | |
| PANTHER | 6 | 440 | 435 | 1.2E-234 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 442 | 419 | - | – | |
| Gene3D | 61 | 438 | 378 | 2.1E-128 | ||
| SUPERFAMILY | 72 | 441 | 370 | 4.3E-126 | ||
| Pfam | 108 | 429 | 322 | 8.6E-106 | ||
| SMART | 227 | 253 | 27 | 25.0 | ||
| SMART | 254 | 275 | 22 | 3000.0 | ||
| ProSitePatterns | 284 | 297 | 14 | - | ||
| SMART | 307 | 328 | 22 | 190.0 | ||
| SMART | 336 | 357 | 22 | 1900.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi0g1v0000500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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