Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0000500.1

Overview

Field Value
Gene ID LotjaGi1g1v0000500
Transcript ID LotjaGi1g1v0000500.1
Lotus japonicus genome version Gifu v1.2
Description Chloride channel protein; TAIR: AT4G35440.1 chloride channel E; Swiss-Prot: sp|Q8GX93|CLCE_ARATH Chloride channel protein CLC-e; TrEMBL-Plants: tr|A0A151R5P9|A0A151R5P9_CAJCA Chloride channel protein; Found in the gene: LotjaGi1g1v0000500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:313902..320231) extracted from Lotus japonicus Gifu genome v1.2.

TAAAAAAAATCTTATCATCTTCAGCTTTGATTATGTAATTGGTCCCTACAGATTAGGTAACAAGACGCATCAAGCCACCA CTCCTCATAGAACATTATCTGCAAAACCAAAATTGCAACTTCAATTCTATGGAATTCCATCTATAAAGGCCCCACCTTTA CCGTTGCAGAGTGAAGTAAAAGGTTTCAAAACTCAGAAATAGGGACAAAAGAAAAAGAGAAAGAAACAGAGCTAGAGTAA TAACAAGGGGAAAGAGCCAAGAGGCCAAGAACAAACAGGGGAACAAAAATGGAGTGTGTTAACACATCTTCAACTTCGTC GTCCATGCGAGAACGAAGCTCCTTCATACTTTTCGTGTTGTGCAAGGTCTTGCTCTGCTCGTGGCTGCTCTGAAGCTTCT ACGCTAGCGCCTCGAGCTCGCTCAGCTCCTCCTTGACGGTGGTAGGAGGAGGAGGAGAAGGAAGAAGGGAAGTGGGTTGG TGGTGTGGTAGTGGGATAGAAGAGGAGGAGGTAGAAGAAGAAGAAAAATGGCACCCACATCCTTCCCATATCTGAAAAAT TACTCATTTCCCAGATCTGAAAAACCTAGTTTGCTTCCAGACTTTTTCCTCCTTTCGAGAAGTTTAATTCCTCCTTTCCA GTTTTTTTTGTTTTCAGAATTTTAGAATTTTAAATAATTACATTTTTTAAAATTAATTAGGTTTCTTTAAAAATTAATTA GGTTTTTTTAATTTAAATAAAAAGAAAATAAAGTCCACCTGACCTCATTAATCCTACGTGGCCATGCCAAATGGATCACC GGAGCTCTGGCGTTGACCCAGAGCTCCGGAGGGACCAAAACCAAATCTTTTGACAAAGGATAGGGACTAAAACCCACCTT TACTCCGACGAGAGACGAAAACCAAGCATTTAGTAAGGGTTAGGGACCAAAAACTTATTTAAGCCTTATAAAAATTGTAT GTGGTATTTTGGGTAAATCAAAATAAAACACTCATTGTGTTTATACTCATAGCTTCCTGACATATTTGCTTCTAAAAAAA AAACTTAAATACATTTAATGAAAGTAATTAAGAGATTAAGTTCAAAAAAAAAATTAAGAGATTAATGAAAATGAAACGTG TTTCAAAAATAAATCAATTCAAAGGGTTTAATGATAAAAAAAAAAAAGAATCATGATGTTTTTAAATGAGCTGGTGTTGG TGGGGGAAGAAGTTGTTGATGAAGAAATGGTTGGCTCAGGATGCATGATGAGAGTGGGAGTTCAACCCAGTTGGCAGCGT CATCCGATTGTTGCGGAGGAAGCAGTTAAACTGATACCGATACGGTGGTTCCCTGCTTCAAAATCTAATAATGGCCGCCG AATTAGCAGGCGCAGGCGTCCGTTTTGTGTGCCTGAGCCTCCTGATAATAGAGGCTTCGCTTCTGCTTCTGCTTCAGAAC AAGTAGAGCTAGAATTGAAGCTTTTCACCGGAAGGATTCGAAATTCAGGAATAATATCTTCATGCACGGTTGGTCTCCTC ACCGGCGTGGCTGTCGTGCTCTTCAATAATGTTGTCCATGAAATTCGTGATTTCTTTTGGGATGGAATTCCTTATCGAGG CGCCTCGTGGTTGAGAGAAGCACCGATTCAGGAAACCTGGACCAGAGTAATACTAGTTCCGGCTTTCGGAGGTGTTGTTG TGGCTCTGCTCAACCTCCTCCGTTCACGTTCTCCTCCTGCTTCCCGCCCTTTCTTCAAGGCTATGGCAGCTTCTTTTACT TTAGGCACCGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGTACCTCCATTGCCAAAGGGCTTGACAAGGC TTCTGGTTCTGGCAGAATGCTCTCCCTTCTCGCCGCTGGATCCGCTGCTGGCCTCTCTGCTGGTTTCAATGCTGCTGTTG CTGGTTGTTTTTTTGCTGTAGAATCCGTCTTGTGGCCGTCACCTGCAGATCAATCTTTACCACTCACAAATACTACTTCC ATGGTAATACTTAGTGCTGTCATAGCTTCTGTAGTTTCAGAGATTGGCCTGGGCTCTGAACCAGCCTTTAAAGTTCCAGA GTATGATTTCCGTTCTCCTGGTGGTAAGCCCTCTGGATTTTATTGCCAACATTTCCATTTCTGCTGCTGATATTGCTGTT TTTGCTTCAAGAATTTCATTTACCAACAACCTCTTTCACTGCATCTAAATCTACAAGAGTCACAATCACTCCTGATGAAT CTCCTTGTTTGACCATCAGAAACATAGCAATTAACCACCTGCATTATTGTACTTCAAACAGAAAACTGTTTTACTGTAGT TCAATGTGATTTCAGTTCTAAATATTGCTTGTATTATAGTACTTCAAGTTTGACATAATATTTAATAGAATCAGACATAG ACTTCTTTTTAGACTGAAACTGGGTAATATATTCTTTTCATATGATGATTTTGAATTTGAAGAAAACAAAAGCTGGTTTC TTTGGGAACATTTCTTGCTATCCTCAATCTGGTTGGTATGTTTTACTGTGAGAGTATTTAACTTGATTTCAGAGCTCCCG CTGTATCTACTGCTAGGCATTTTATGTGGCCTGGTGTCATTGGCCCTATCTTGGTGTACATCATATATGTTGACTATTTT TGACAATCTTCATAAGGCCACTGGCATTCCAAGAGCTTCATTCCCTGTATTGGGAGGCTTATCAGTTGGGTTGACAGCAT TGGCATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTCGACATTTTGTTAGAATCTCGGCCATTTGTTAAAGGCCTT TCCACTGACCTATTGCTTCAGCTAATAGCTGTCAAGATTGTTGCAACATCTTTATGCCGTGCCTCTGGATTAGTGGGAGG ATATTATGCCCCCTCTCTCTTTATTGGTGGGGCAACTGGGATGGCTTATGGGAAATTAATTGGGTTGGCTGTTTCTGAAT CTAGTCCTTTGGTCAACCTCTCTGTGTTGGAAGTGGCATCACCACAAGCTTATGGCCTGGTACTATTCTTTCTTTTTTGG CTATATAATATTTATTATTAGATATTTTATGTTTGGCATGATCTTTTTTCTTCTTGTCTTTGGGATGGGAGGCCAATTTG CTCAATCAGCGATGACTTCCATGGATGAATAATTGAGCCTTTTCCTGAAGGAACCCCCTTTTCTGTGTGTAGCTAATCAC AATTATTTAATATTTCAGAATTCTTGGTTTATTATTTCATCTATCTTCTGCAAATATTCAGGAAAAGAAGCTGGCATGCC GCGGATGATCATATTGAAGTTCCTTTTGCAGGTTGGAATGGCTGCGACTCTTGCAGGCGTTTGTCAAGTACCACTTACTG CAGTTTTGCTTCTCTTTGAATTGACACAGGACTATAGGATTGTTTTACCACTACTTGCAGCGGTAGGTGTGTCTTCATGG ATTTCATCCATACAGACAAAGAGAGGCGACGACAGGGAGACAAAAAAGCTGAAGTTGGAAAACTCAAGCTCTGCTTCACT TCCAGAAATATCTTCCTGTAGTTCAATTGAGTCATCTACTGGTAATACCTTTTCTGAAGGTGTGTCATCTTTGAGTAATT TGTGTCAAGTCGAAAGTTCACTATGTGTAGATGATAATGTTGAAACGACATATTTGACAAGGAGAACATTTGTTTCGGAA GCCATGAAGACTAGATATGTGTCAGTGTCAATGTGCACACTGCTTACTGAAGTAATAGATCTCATGCTTGTGGAGAAACA GTCTTGTGCGGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACGCTTAGAGACATTCAAGACTATGGAAAAT TTGCAAAAGCGAGAAGCAAAAATCCGAAGGTAGAAGAGTCTATGTTCTATCTTTATCGAATGTGAAATCTATATATGCTT TCAATAATGACGTACTTTTTTTTTTGGTACATCGGAAAGATAAATTGCACCCGCCATGAATCGATCACTGGACCTCCCCT ACCCAACCCATATGTCCCCAGCTCCTACCACTTGAGCTATCCTACGGGGACATAATGACGTACTTTGTGGGAACCTAGAT TATTTACAATTATAATCTAAATTGCTGCTGAGGAGGAAAAAACCAATTGCAGAATATTGAATTTAGGCCTTGAATTTAAA AATCCTAAGATAATAGGTGATGGTGTACTAGTGAAATTTGAATATAAATTAGGCAGCCTATAAATTATGAACTTGCAATT TCATACCATCACTTATAATGATACATAACAGAGGAACCAAGTTCTGGTATTACACATTTGACCAAACATTGAGCATCCAT TACACAAATGTAGAATAACAAACATTGCTTCACTATACTTGTAGTATATCCTGGGAAGCCCAAGTTTCAAAATGTTCCTT GTGGATCTATTGTTTGAAGATAATATGTCTTTTTCCTTTGTGTTATTGGATTTCATGCGTAGAATGTAGATATTTGGTAG CATTGCATAATTCATAAACTCGCGGGGAAAATGGCTACCTTTCTGGTAAGTGAGAATTTGGCCACTTTATGATTGTTTGA TGGCTCAATGCAGTCGGAGAGGTGCTTATGTAGAGCTTGGTGGGGCCTTTTATTAAATAAATTGTATACTGCTAAAAGTA AAACAAATGCTGAACTAAACAACTTTATTTTAGATTTATAAATATGACTATTTGATTCTTCCTCTTCTTTCAGGAGCTTT TAGTTTCTGAATTATGCCTATTAGATGGAGGAATATGTAGTGTACCATGGACAGCTACTCCTGATATGGAACTTCGCTTT GCCCAAATGATTATGAAGGAACATGGAGTCGATCAAGTTCCAGTTGTGAGGAATATCTATGAAAAAACATATCCAGTTGG CATATTGGATCCCGATAGTATCAATCTGACATGCAGGTCCTGCTACTATTTTCCATTTATTTATCTGTATGGCTTATATG CTCCCTTTGATAACATGTGTCATACTCCAGGAAAACAAATCTTTCTTCAAATAGATGCATTTATTTTTACATTAATTTTG AAAGGATTCAATTTAAAATGGTCAAGCAGAGATCGTACGCATAGATATATATACCTTTGTTATATCAGGGTTTTATTTCA AAGTAAGGTTTCACTAGAAAGTGTAGAATAGTCAAACGCTTCAAAAGATATCAGTTGCCAACAAGTCAAGAAGATTCCAC TGGATGTTTCATCCTAGAAATGGCTGGTTTGTGGATTTGCAGTGCAATTAGAGTTTTGTGATCTGAATATCTTGGACATT GAAGGGTCAATTTTATTGCATTTGCTAAAATATGCTTCATGACATGGAATGTTGGGGTAGCAAGAATCCAATTGTACAAC AGAATAATGCCAACATGACTGTAGGCTAGAAAGTCTTGAATTTGGATGTGGGTTAGTGTCTAAGTTCCTTAATATTATCA AAATAACGAGAAATACTGGTAAAATGGATGGATGTAATAGGAAAATCTAGGATGGCGTGGGTGGAAATGAAAAGGACGAT AATAGAAGTTGTAGAAACTTCTAAGCATATTCAAAGCAACATTATGTGAAAATGAACGTTGTTAGAAATTGAACGTGGAA GACCATTATTTTAGTGTTAAGAAGGATATAACCGTTTTCGCTTTCATGCTTTTTGTTTGTTTGTTATGATGCCCCTGCGT AATTATTGTTGTTGTTAAATGCAGTGCTTTGGCGACCAGAGAGTCCCTCAGCTAATATTCAACCGTTAGGACTTAGGAGG ATGAAGAGCCTTCCGTTTCCTAGTTTGTACTCCATTTTTTATCATATAACTTGCCTTTAACATGCCAAGTTAAACCATGC CATATTGCCATGTTTTCTCCGTGTTGTAAGTGGAAAGAAGTTCAAAATAGAGCTCGTGTTTAGTTATGTTCGCTTCCACT GTGTAGATTGCCTAAGGGGACCTATTGTAATACGATATAGGTGTTTCTTGTCCTAAATGTAAATTTTCTCCATGAAGTTG TATTTTCTAGTCACTTCTGTCATCACTCTTCACCACCTAACTCTCTCCGTTCCTATATAACTGACACTATTTATAGCTTA ATTTTATTCCTAATTATCTGTCACTTTACAAAGTTAAAGAGAGCATTAATTATACTTTATCAATTGTACCCTTCATTTAT TGGTGGTAGGAAAATTGAAAAGTTAAAATTAATAAGAGAGATAAATGGTATAATAGGAAGTTAGATTGCAATTTTAATAA AATAAGAACATTAATTGCTACTATTTCTTGATAAAACTAGTTATTTCTATGTTAGTTAATTTGAAGCTAGTGTTTTATTA TATATTCATT 

CDS sequence (LotjaGi1g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGTTTTTAAATGAGCTGGTGTTGGTGGGGGAAGAAGTTGTTGATGAAGAAATGGTTGGCTCAGGATGCATGATGAG AGTGGGAGTTCAACCCAGTTGGCAGCGTCATCCGATTGTTGCGGAGGAAGCAGTTAAACTGATACCGATACGGTGGTTCC CTGCTTCAAAATCTAATAATGGCCGCCGAATTAGCAGGCGCAGGCGTCCGTTTTGTGTGCCTGAGCCTCCTGATAATAGA GGCTTCGCTTCTGCTTCTGCTTCAGAACAAGTAGAGCTAGAATTGAAGCTTTTCACCGGAAGGATTCGAAATTCAGGAAT AATATCTTCATGCACGGTTGGTCTCCTCACCGGCGTGGCTGTCGTGCTCTTCAATAATGTTGTCCATGAAATTCGTGATT TCTTTTGGGATGGAATTCCTTATCGAGGCGCCTCGTGGTTGAGAGAAGCACCGATTCAGGAAACCTGGACCAGAGTAATA CTAGTTCCGGCTTTCGGAGGTGTTGTTGTGGCTCTGCTCAACCTCCTCCGTTCACGTTCTCCTCCTGCTTCCCGCCCTTT CTTCAAGGCTATGGCAGCTTCTTTTACTTTAGGCACCGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGTA CCTCCATTGCCAAAGGGCTTGACAAGGCTTCTGGTTCTGGCAGAATGCTCTCCCTTCTCGCCGCTGGATCCGCTGCTGGC CTCTCTGCTGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTTGCTGTAGAATCCGTCTTGTGGCCGTCACCTGCAGATCA ATCTTTACCACTCACAAATACTACTTCCATGGTAATACTTAGTGCTGTCATAGCTTCTGTAGTTTCAGAGATTGGCCTGG GCTCTGAACCAGCCTTTAAAGTTCCAGAGTATGATTTCCGTTCTCCTGGTGAGCTCCCGCTGTATCTACTGCTAGGCATT TTATGTGGCCTGGTGTCATTGGCCCTATCTTGGTGTACATCATATATGTTGACTATTTTTGACAATCTTCATAAGGCCAC TGGCATTCCAAGAGCTTCATTCCCTGTATTGGGAGGCTTATCAGTTGGGTTGACAGCATTGGCATATCCTGAAATCCTCT ACTGGGGTTTTGAGAATGTCGACATTTTGTTAGAATCTCGGCCATTTGTTAAAGGCCTTTCCACTGACCTATTGCTTCAG CTAATAGCTGTCAAGATTGTTGCAACATCTTTATGCCGTGCCTCTGGATTAGTGGGAGGATATTATGCCCCCTCTCTCTT TATTGGTGGGGCAACTGGGATGGCTTATGGGAAATTAATTGGGTTGGCTGTTTCTGAATCTAGTCCTTTGGTCAACCTCT CTGTGTTGGAAGTGGCATCACCACAAGCTTATGGCCTGGTTGGAATGGCTGCGACTCTTGCAGGCGTTTGTCAAGTACCA CTTACTGCAGTTTTGCTTCTCTTTGAATTGACACAGGACTATAGGATTGTTTTACCACTACTTGCAGCGGTAGGTGTGTC TTCATGGATTTCATCCATACAGACAAAGAGAGGCGACGACAGGGAGACAAAAAAGCTGAAGTTGGAAAACTCAAGCTCTG CTTCACTTCCAGAAATATCTTCCTGTAGTTCAATTGAGTCATCTACTGGTAATACCTTTTCTGAAGGTGTGTCATCTTTG AGTAATTTGTGTCAAGTCGAAAGTTCACTATGTGTAGATGATAATGTTGAAACGACATATTTGACAAGGAGAACATTTGT TTCGGAAGCCATGAAGACTAGATATGTGTCAGTGTCAATGTGCACACTGCTTACTGAAGTAATAGATCTCATGCTTGTGG AGAAACAGTCTTGTGCGGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACGCTTAGAGACATTCAAGACTAT GGAAAATTTGCAAAAGCGAGAAGCAAAAATCCGAAGGAGCTTTTAGTTTCTGAATTATGCCTATTAGATGGAGGAATATG TAGTGTACCATGGACAGCTACTCCTGATATGGAACTTCGCTTTGCCCAAATGATTATGAAGGAACATGGAGTCGATCAAG TTCCAGTTGTGAGGAATATCTATGAAAAAACATATCCAGTTGGCATATTGGATCCCGATAGTATCAATCTGACATGCAGT GCTTTGGCGACCAGAGAGTCCCTCAGCTAA 

Protein sequence (LotjaGi1g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMFLNELVLVGEEVVDEEMVGSGCMMRVGVQPSWQRHPIVAEEAVKLIPIRWFPASKSNNGRRISRRRRPFCVPEPPDNR GFASASASEQVELELKLFTGRIRNSGIISSCTVGLLTGVAVVLFNNVVHEIRDFFWDGIPYRGASWLREAPIQETWTRVI LVPAFGGVVVALLNLLRSRSPPASRPFFKAMAASFTLGTGNSLGPEGPSVDIGTSIAKGLDKASGSGRMLSLLAAGSAAG LSAGFNAAVAGCFFAVESVLWPSPADQSLPLTNTTSMVILSAVIASVVSEIGLGSEPAFKVPEYDFRSPGELPLYLLLGI LCGLVSLALSWCTSYMLTIFDNLHKATGIPRASFPVLGGLSVGLTALAYPEILYWGFENVDILLESRPFVKGLSTDLLLQ LIAVKIVATSLCRASGLVGGYYAPSLFIGGATGMAYGKLIGLAVSESSPLVNLSVLEVASPQAYGLVGMAATLAGVCQVP LTAVLLLFELTQDYRIVLPLLAAVGVSSWISSIQTKRGDDRETKKLKLENSSSASLPEISSCSSIESSTGNTFSEGVSSL SNLCQVESSLCVDDNVETTYLTRRTFVSEAMKTRYVSVSMCTLLTEVIDLMLVEKQSCAVIVDTDDTLIGLLTLRDIQDY GKFAKARSKNPKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYEKTYPVGILDPDSINLTCS ALATRESLS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 105 105 -
PANTHER 92 728 637 1.9E-250
PANTHER 92 728 637 1.9E-250
SUPERFAMILY 99 515 417 4.19E-78
Gene3D 102 525 424 1.1E-92
TMHMM 106 128 23 -
Phobius 106 128 23 -
CDD 114 508 395 1.04383E-75
Phobius 129 155 27 -
TMHMM 154 176 23 -
Phobius 156 176 21 -
Phobius 177 231 55 -
Pfam 182 512 331 1.9E-66
PRINTS 189 208 20 3.4E-15
Phobius 232 256 25 -
TMHMM 232 254 23 -
Phobius 257 275 19 -
Phobius 276 293 18 -
Phobius 294 313 20 -
TMHMM 312 334 23 -
Phobius 314 337 24 -
Phobius 338 356 19 -
TMHMM 355 377 23 -
Phobius 357 377 21 -
Phobius 378 396 19 -
TMHMM 397 419 23 -
Phobius 397 416 20 -
PRINTS 417 437 21 3.4E-15
Phobius 417 421 5 -
Phobius 422 444 23 -
TMHMM 426 445 20 -
Phobius 445 463 19 -
PRINTS 462 478 17 3.4E-15
Phobius 464 488 25 -
TMHMM 465 487 23 -
PRINTS 480 499 20 3.4E-15
Phobius 489 493 5 -
TMHMM 494 513 20 -
Phobius 494 511 18 -
Phobius 512 729 218 -
Gene3D 577 722 146 1.9E-15
SUPERFAMILY 582 710 129 9.13E-15
Pfam 587 638 52 8.8E-5
ProSiteProfiles 591 647 57 9.771
CDD 591 715 125 1.19625E-58
SMART 594 642 49 0.68
ProSiteProfiles 666 727 62 7.001
SMART 669 720 52 15.0

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Voltage-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Biological process Chloride transport The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0000500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…