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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0001000 |
| Transcript ID | LotjaGi1g1v0001000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT4G35290.1 glutamate receptor 2; Swiss-Prot: sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2; TrEMBL-Plants: tr|I1M634|I1M634_SOYBN Glutamate receptor; Found in the gene: LotjaGi1g1v0001000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:393453..397620) extracted from Lotus japonicus Gifu genome v1.2.
TGGTCCTCCCAGTCTAATTATAGTTCTGAACCCTACTCCACTCAACTCAACTCCGGGTTTGTGCTCTCATTGTCTCCCGC TAGTTAATTAAAATCCCATCTTCTATTCTGTTCACTTCACCAATCACCACACCACACACATTCCATGCCTTCATCTCTTT TCTTTCTTCCCTGCTTCAATTGAATTTATTATAACATTCACAAACCAAACCAAAACGCATCGTACATTACAACTGCAGTC TGCATGCAGCAGCAGCTAGTCTATCACGACCACCACGGGTTCCGGTTCTGGATGAATCTGCTGAGCTTGTGCCTGTGCCT GTGCCTGTGCCTTGCATTGCACAGAGCACCAGGGGAAGGAGCTTCCAGACATGACAACGTCGTCGTCAATGTCGGTGCCA TATTCACTCTGAAGACTATAAACGGAAAAGTCTCCAAGATTGCCATCGAAGCTGCACAGAAAGATGTCAATTCCGATCCT CGCATCTTGGGTGGACGTAAACTTTCCATAACCATCCATGATTCTAACTTCAGTGGCTTTCTAGGCTTTATTGGGGGTAT TCAAATTCACTCACTTCCTTCTTTGTTTAACTTAATTGTATAAATTCTTATACTCCTTTACCTGGATCCTGCTATTCAAT CACTTTGTTAATTCATTCTTATTTAAACTTGACTGATAATAGCCCTCAGGTTCTTGATGACTGATACTGTAGCTATAATT GGTCCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCAAGTTCCTCTGCTATCTTTCACGGC TTTGGATCCCACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACTGCACCCAGTGACCTGTTTCAGATGACTGCAG TTGCTGACGTGATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTATAGCGATGATGATCAGAGTCGAAACGGGGTA GCTGTCTTGGGGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACAAAGCAGCACTGCCCCCGGATCCAACCGCCAC TGCAGGTCATGTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCTCGAATAATTGTTGTGCACACCTACGCCATTA CAGGTGCCTTGGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAAAGGCTATGTCTGGATAGCTACTGCTTGGTTA TCAACTGTTTTAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTTCTAACTCAATTCAAGGCGTTCTTACACTTCG CCCTCACACCCCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGGAACCACATAAGTAATGGCTCAATTGGGTTAA ATCCATATGGCCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTATTTTTTGATCAGAATCAAACC ATTTCCTTCTCTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTACTCTGAATCTTGGTGCTCTGCACGTTTTTGA TGGAGGGAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGGTTGACAGGACCTATTCAATTTGTTTCAGACA GATCTCCTTTACATCCATCATATGACATCCTTAATGTACTTGCTACTGGTTATAGGAGAATTGGATACTGGTCTAATTAT TCAGGGCTCTCTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCAATCGTTCAATTTCGAACCAGCGTCTACACCG TGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTCCCAAATAATGGAAGGCAACTCAGAATTGGAG TTCCCAACAGAGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCACCACTGCAGTTCAAGGATATTGCATAGATATA TTCTTGGCCGCCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTGTTCTGTTTGGAGATGGACATAAGAACCCGAG CTACTATGATCTTGTCAATATGATTACTTCTGATGTCAGTAATACTCAGAAATTATAATCCCTTTAATTAATAAAGTTAT GATCACTGTATTGCTTTTACTGATGGTATGTCACTTGCATTTACAGTCTTTTGATGCTGTTGTGGGTGACATTGCTATTG TCACTAGCCGGACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGTGGTTGCTCCGGTGAAAAAG TTGAAGACAAGTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTCTCCTTCTTGT TGGAATAGTGGTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAGAAACAGATGGTTACGATTC TTTGGTAAGTCTTTTCTTATTGTTACATTTGTTCTCATCAGCCAGTATGACAATATGTACTTAAAAGTGTCATGCAAAGT AATATTATTCAAGAGAACTTGTCCAGTGTATTTCTGGAGCAGCCCAAGTAACTTGTATAACTACTTATCATAGAACCTGA TTTACATTCAATCTTGTTATATAACGATGAGATGACAATCAAGTCAAGTTTACTTCCCTTCTTTGACTCTGGTAGCTACT GTACATAGCCCAACATTAACTCATCATTTTTGTATGAGATTGCAGGTTTAGTTTCTCAACCATGTTCTTTGCGCATAGTA AGTCCACAGTTCATGTCATATGATAGGTACTTAGCGAGTTAGTTAGTAGGGCCTACTAACTAACTCCCTAAGTACCTATC ATAATATTTATAAAACATACCATAAAGTGTATCCTGGTAAGTAACTAGACAGAAACCAGATTTCTCATTGTTTCAGGAGA AAACACAGTTAGTACACTTGGTCGTGTTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACAG CAAGCTTGACATCAATTCTGACTGTGCAACAGCTGTCCTCGCCCATAACAGGAATTGACACTTTGATATCCAGCAACCTA CGTGTAGGGTTCCAAGTAGGATCATTTGCTGAAAATTACCTGAACGAGGAACTCAACATTGCAAAACATAGACTCGTTCC ACTTGGCTCACCAGAAGAATATGTTATTGCTCTTGAGAAGGGAATCGTTGCAGCAGTGGTAGATGAACGACCCTATGTTG AACTCTTCCTGTCAAACCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGTGAGTATC TTTAATTTACTCAAAATTACTTGAATGCAGCTTTCTTAGGATGGAGAATCTAGGAATATACCAGGGCACAAATTGCCAGT GCAGAAAAACAAAACATTACAGTAGGTGTGTATGGGACGTCAAATATCACAAGTTGAGTTGAATTTTCAATAAAGAAAAC TGTCATGCTAGTTTATTTGAAACACTAGATACTATTTTGATCGTTCAATACTTCCTCAACTGCAATTTGTGTGTACATAT AAAACATTATGTTACTTGTTGTCATCATTAATTGATGAAGTTCATAATTTTTAGTTGAAGCTAGGCCCCTTAATTTCTTG AGTTTCTTTTCTTGGCAGGCATTTCCGAGGGATTCTCCTTTAGCAATTGATATGTCAACTGCCATTCTGAGTCTATCTGA GAATGGTGAACTTAGGAGGATCCGTGAAAAGTGGCTTTCGGAAAAGGCTTGTGGTTTTCGTAATAATGAGGATGAGCAGC TTCAATTACATAGCTTTCGGGGCTTGTTTCTGATCTGTGGCATAACATGTTTCCTGGCGCTTCTTATCTACTTCTTTTCA ATAGTACGCCAATTCAGTCAAAACACTCCTCACAAAGACAGATCACGCATCCAGACTTTTCTAAATTTTGTTGATGAAAA AGAAGACATATCACACAACCAATTAAAAAGAAAAGTTGAGGATATTTCATCAGATGCTTATTCCAGAGAAAGTCATTTGA GGAGCATAGATCAGAGGGCACAAATGGATAAATCCCAAGAGGCTCCTTTGGCTTGACTCAGTTATATATAGGTTGTTCTT GTTGAAATTTAAATCTAAGTCGTTAAGTGATAGCATTGTTGTTGTGATATCAGGTGGGATTTATTTACTCCACGAGTAAG TCAAAAAA
CDS sequence (LotjaGi1g1v0001000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGCAGCTAGTCTATCACGACCACCACGGGTTCCGGTTCTGGATGAATCTGCTGAGCTTGTGCCTGTGCCTGTG CCTGTGCCTTGCATTGCACAGAGCACCAGGGGAAGGAGCTTCCAGACATGACAACGTCGTCGTCAATGTCGGTGCCATAT TCACTCTGAAGACTATAAACGGAAAAGTCTCCAAGATTGCCATCGAAGCTGCACAGAAAGATGTCAATTCCGATCCTCGC ATCTTGGGTGGACGTAAACTTTCCATAACCATCCATGATTCTAACTTCAGTGGCTTTCTAGGCTTTATTGGGGCCCTCAG GTTCTTGATGACTGATACTGTAGCTATAATTGGTCCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATG AGCTCCAAGTTCCTCTGCTATCTTTCACGGCTTTGGATCCCACCCTCACACCTCTTCAGTGTCCTTATTTTGTCCAAACT GCACCCAGTGACCTGTTTCAGATGACTGCAGTTGCTGACGTGATAAGTTATTTTGGTTGGAGGCAGGTCATTGCAGTTTA TAGCGATGATGATCAGAGTCGAAACGGGGTAGCTGTCTTGGGGGACAAACTTGCTCTCAGACGCTGTCAATTGTCTTACA AAGCAGCACTGCCCCCGGATCCAACCGCCACTGCAGGTCATGTTACTGATCAATTGCTCAAGATAAGAAGCATGGAAGCT CGAATAATTGTTGTGCACACCTACGCCATTACAGGTGCCTTGGTTTTCGACATGGCTCAAAAACTAGGGATGATGAGCAA AGGCTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTTTAGATTCAACTTCACCTTCATCGCTTCCTTTAAATACTT CTAACTCAATTCAAGGCGTTCTTACACTTCGCCCTCACACCCCTCAGTCAAGAAAGAAGCAGGCATTTATCTCGAGGTGG AACCACATAAGTAATGGCTCAATTGGGTTAAATCCATATGGCCTGTATGCTTATGATTCTGTTTGGATGATTGCTCATGC ATTAAAATTATTTTTTGATCAGAATCAAACCATTTCCTTCTCTAATAATACAAATTTAAGTGGCACCAGGGAAGAGACTA CTCTGAATCTTGGTGCTCTGCACGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGG TTGACAGGACCTATTCAATTTGTTTCAGACAGATCTCCTTTACATCCATCATATGACATCCTTAATGTACTTGCTACTGG TTATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATATCCCCTGAGAAACTTCACACTAAGCCTGCCA ATCGTTCAATTTCGAACCAGCGTCTACACCGTGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGGTGGGTTTTC CCAAATAATGGAAGGCAACTCAGAATTGGAGTTCCCAACAGAGTTAGTTATGGGGACATGGTGTCACAAACAAATGGCAC CACTGCAGTTCAAGGATATTGCATAGATATATTCTTGGCCGCCATAAAATTGCTCCCATATGCATTTCAATATAAGTTTG TTCTGTTTGGAGATGGACATAAGAACCCGAGCTACTATGATCTTGTCAATATGATTACTTCTGATTCTTTTGATGCTGTT GTGGGTGACATTGCTATTGTCACTAGCCGGACAAAGATTGTGGATTTTACTCAACCATTTATAGAGTCAGGTTTAGTTGT GGTTGCTCCGGTGAAAAAGTTGAAGACAAGTGCTTGGGCTTTCTTGAGACCGTTTACTCCACAGATGTGGGGTGTCACTG CACTTTTTCTCCTTCTTGTTGGAATAGTGGTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCTCCAAAG AAACAGATGGTTACGATTCTTTGGTAA
Protein sequence (LotjaGi1g1v0001000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQQLVYHDHHGFRFWMNLLSLCLCLCLCLALHRAPGEGASRHDNVVVNVGAIFTLKTINGKVSKIAIEAAQKDVNSDPR ILGGRKLSITIHDSNFSGFLGFIGALRFLMTDTVAIIGPQNSVMAHVLSHLANELQVPLLSFTALDPTLTPLQCPYFVQT APSDLFQMTAVADVISYFGWRQVIAVYSDDDQSRNGVAVLGDKLALRRCQLSYKAALPPDPTATAGHVTDQLLKIRSMEA RIIVVHTYAITGALVFDMAQKLGMMSKGYVWIATAWLSTVLDSTSPSSLPLNTSNSIQGVLTLRPHTPQSRKKQAFISRW NHISNGSIGLNPYGLYAYDSVWMIAHALKLFFDQNQTISFSNNTNLSGTREETTLNLGALHVFDGGKQLLDNILRINMTG LTGPIQFVSDRSPLHPSYDILNVLATGYRRIGYWSNYSGLSVISPEKLHTKPANRSISNQRLHRVIWPGNTTEKPRGWVF PNNGRQLRIGVPNRVSYGDMVSQTNGTTAVQGYCIDIFLAAIKLLPYAFQYKFVLFGDGHKNPSYYDLVNMITSDSFDAV VGDIAIVTSRTKIVDFTQPFIESGLVVVAPVKKLKTSAWAFLRPFTPQMWGVTALFLLLVGIVVWILEHRTNDEFRGPPK KQMVTILW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 34 | 4 | - | – | |
| Phobius | 35 | 608 | 574 | - | – | |
| PANTHER | 38 | 648 | 611 | 1.5E-286 | – | |
| PANTHER | 38 | 648 | 611 | 1.5E-286 | – | |
| SUPERFAMILY | 47 | 479 | 433 | 1.85E-78 | ||
| CDD | 49 | 443 | 395 | 4.41028E-119 | – | |
| Pfam | 66 | 423 | 358 | 6.8E-77 | ||
| Gene3D | 66 | 416 | 351 | 9.5E-83 | – | |
| Gene3D | 163 | 440 | 278 | 9.5E-83 | – | |
| TMHMM | 242 | 259 | 18 | - | – | |
| SUPERFAMILY | 465 | 611 | 147 | 1.09E-22 | – | |
| SMART | 488 | 637 | 150 | 9.5E-5 | ||
| Pfam | 502 | 589 | 88 | 2.5E-10 | ||
| Gene3D | 510 | 583 | 74 | 8.0E-28 | – | |
| Gene3D | 584 | 593 | 10 | 8.0E-28 | – | |
| Gene3D | 594 | 635 | 42 | 8.0E-28 | – | |
| TMHMM | 605 | 627 | 23 | - | – | |
| Phobius | 609 | 627 | 19 | - | – | |
| Phobius | 628 | 648 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ionotropic glutamate receptor activity | Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0001000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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