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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0002200 |
| Transcript ID | LotjaGi1g1v0002200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60580.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I1M648|I1M648_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0002200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:627016..631522) extracted from Lotus japonicus Gifu genome v1.2.
GGGATTGGAGTCATAAGGTGAAGTCTCTGTCTGTCTGTGTCTGTGTCTGTGTGTGTGGAGTGAAGAAGAAGGAAAGAAGA AGCAGTGTCAGTGAGAGAATGGAGAATCGTTGGAGAAATGGAAGGATCATCAAGTTCGCAAGTCACACGTTGCAGTTGCC TCGTATTAATCGTAATCACATCCTTCTCCTTTTTATTATTATAATCATCATCATCTTAATCATAAACAACACTAATATTG ATATTGTGGTGTTTCTGCATTTGATTCTGTAACAGCAACGCTTTTGCCAAATCCTTTCATTGCTCTGATAATTTCATGGA GAACACAGGCGCAGATGCTGCTCAACTTCAAACTCAAATTCATACTCATCCTGCTCAGGTGATTTTCACTTCTTTCTTCA AAACTGAAAACCCTTACCAAATGAAATGGGTTTGATCTGTATGTATCATCAAAATTTGACTAGAGCTAATTACAGTTTCT TACAAAATCCTGTTGTTTGAACTTTGAAATGACCTTGTTCATTGGATTACTGATGTTTATTATAGCATGCGTGTTACGTG TATCAGCTCAGCTTAATCAATTCTGACGCACATTAACTACTCGCAGAATTTACAAACATGCACTAAGTAGTTGTTTAGTA TTATTAATCATGCCAAATTTATCATTACATCATAAAACAGCTTCTCAATTTGATTTTCACGGCATTATAGACAAAACCAT GTGGTGATGGAAGTGATAATGGTGACAAGGCCTCCTTGATTCGTCAGTCCAGAAGACCAACTCTCTCCTCGCTGCAAATA CCAGCACGATCACTGGATATTGCGTTGTCTTCTTTTGCAAAGACGGATGCTCCTTCACCTTCAGTTTCGCTGTCAAGTCC TGGTTCCGCTGCCAGAGGACTTCCTCCGAGGCCCAATTCAGCCAGAGTCAGACCTCGGGGGAAATCGTCTAGCAGGACAA AAACTTGTTCCTCCGACACTGAGAGGACAGTTCTCATTGTTCCTCATACTCCCCCATCAGATGCTCCTTTGGATATACCT TCCCCTTCAAGGTTTCGGTCTCTTACTAATAAGGCCATCTCTTCCCCGTCAATTAAAGCTGCACATTCATTACCAGTTAC TCCACTTACAACTTCAGGTGCAGAGAATATGCACGGAAGACATCTAGGGTGTGACTCTGGTTTAAGTGTATGTTTCTGTT GTTAGTACTTCTTTCATGGTCAAACTAACTACTTTAATACATTTTGTATATAAGAATGGTATAGGATACTTAATATACGC TGCATTGATTAATTATTTCTTTTTGTATAGACACTGGAAGTTCAGCAGCACATGACTCGATCATTTTCTGTTCCAGTTAA TGGCAATGCCACTAATTTAAAGCGTACAGATTCTAGGGGTTTGATTCGTATTATTTCAGCAAAACAACATCTTGAAGCTG TAGGTGGAACATCAACCAATGATTCTTCAGTCCTAGAGATTGGTAATTCTTCAAAATATATGGAACATACATAATATTCT TCTAGGCGTCCCTTTTAAATTTCTTGATCAACAATGTGCATAATTTGAAAATTAAGTTATTTTGACCAGCAACAACTACT TAATATTGGACACTAAACCATCAATAAAATGAGATTACCAAATAATAATATGCAGGAAAGAAAATATATGTTTCTAGAGA TATATTCTAAAGATAGTAATTACATTGCTGCTCTCCAAATTAAAGAAAGAACTGGTGATAGTGAATGCAGTTATTACAGA TATTAACTTGTAATTTTTAAAAATAAAAAAATTGATTTATCCATTTCTATGTGAATTAGGGTTGCTTGACATTTAAGTAA AAAAAAATTATTAGGGACTAGAAATTCTCATCTACATGCAGATTAATTTTTCTTAATCAATATACTATACTCATCGTCCT TGCTTATCTAGTTAAGTAATTGTTTTTCACACTGTTGCCTTTCTAGCCATTGAAGATGCTACAGAAGATATTTCAGAGGA AGAAGCTGTTTGTCGGATTTGTTTGGTGGAGCTTGAGGAAGGAGGGGATACTCTTAAAATGGAATGCAGTTGCAAAGGTG ATCTTGCACTTGCTCACCAAGACTGTGCAGTTAAGTGGTTTAGTATTAAAGGAAACAGGACATGTGATGTCTGCAAGCAG GATGTCAAAAACCTCCCAGTAACACTGTTGAAAATTCAGAATACTCAAACTTCTTCTAGGCAACCATCAAATGCGCCACA ACAGAGAGAAATAGCTTATTACAGGCAAGTTTGGTTGCTTCAATGTGCTAGACATTTTTGTGTTCTTGTCATCTTTATTT GAAAGGCCTTGTGATCCATACCTTGAAATTTTCTATAACATATAAGGTTAAAGGCCAGTGTATCTCAATATCTTGGTTCA TACTTCACACTGCATTGATCTTAGTAGATCATAATTTTTAGGGGTTATTAGGTTTAATGAGCTGCAGATTCGGTTTATAT GCATGTACGCATCGGTGGCAGTGAATTGTTTGGTGTCCTATTTTTAATAGCAAAAGAAATAATAAAAGGAAAGAAGAATT GCAAAGAACTGAGGTTTAGATTTCATCCTTTCACTTAACAAAAGGAAGACATATAAAATGTCACTTAAACAGCACTGTGC TATTTTCTTTTTATATCATCAAAGAAAATAAATCAAATCATGTGCTAAGATCCAATGAAAGACCACCAAAACTATCATAT CCAACATCAAGTCTAAATATAATTCCCCTTAAATATCCTAGCTTTCTTCTTCATCCAAAGCACCAAAGGACATCATAGAG CCATAACAATTTACCCTCCTTGCTCTTGGCCACAATTTCGAAGTTATTCAAGAGAAGCTGCTCCAGATTATGAGGGAAAG TTCAAGGCCTATCAAAAATCCTACCCCATTTATTATTGGCTGCTGTGATGTGTGAGAATAGTTGTGCTTGTGCAGTAGAT TCTGAAATTTGAGCAACATATGCCACTATCAGGAGACAACACCTTGTTAGGCTACAAAAACCTGTAAAAAGTCATCAGTC AGTGTCTAGTTTTCTTATTGCATTGTTGTTATTTCATGCCTGACAGGATCTGGCAGGATGTACCGGTACTTACCTTGGTC AGCATGCTTGCTTACTTTTGCTTTCTAGAGGAACTACTGGTATGCTTTTATTTATACTGTTTATATGCAGACTAGGGGAG CGCTTTGATAATGCTGTCTATGCTTAATTTTCATTTCTGGCTTTTGTTTTCCTTGGCCATCCTTTTAACTGTACTGTCTG AAATAAAAGTATGTCTGACACAGTGATTTCTACTTTACCAGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCGCTA CCCTTCTCCGGTGTTTTAGGTCTGTTTTCATCTATGATTGCGTCAACCATGGGTAAACTTGTTTCCTTCTGTCCACCTTA TGTCAAATTCATTTATATCTTAGTACCTTCACTCTGGACTTTTGACTTATTTTTCTGTTCTGGTTCTAGTTTTCATTATG AAGCAGAAACATGAATTCATGAAAATGAATAGCATTCATGTATGAAAATTATCAAATATATATAAGTATGTTAGCATGCA CGTGCAAGTTATGGTTAAAGAAAAGGACAATGACAAAAATCAATCATAAAACAGAAGCTATGTAATGAGAAGTGGCTAGA AATTGGACTCATTATGTATTGTAATTAGATAACATTTGGATCATATAATCATAGAAATCCTAATTATTTTTTCCTCCATT GACCTCAAATTCTTTTTTAGCATGTCCTTCCTCAGTAGACCCCCACCACTAAAAGAATTGATATTGTTGGGTTACCCAAA TATAAACCCAACCCCAAAATACATCATACTGAGTTATTAATGTTCCATTAACACAAGTGTATGTCAGCTAATAAGGACTA GTATTGTTTAATAAACATCTCATGATGTGTGTTGGTGGCAGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGT TTGGAATTCTTATCCTGTTTGCTCATGTATTTTATGCTATTGTAAGATGATATAGTTCCTGTCCTAACTTCATTTTGTGT TTTCCATTTCACTTCACCACAATTCAGTGAAGATATTTGGGAGTGGGTGAAAGAAAATGTATATATATTTTAACATGCTC ATCCTTTTTGACTTTGCAGCTTAATTTTAATGCAGTTCTCTCCATTCTCCTTTCCTCTTTCATTGGATTTGGCATTGCAA TCAGTATGAATTCTCTCCTTACCGAATTTATGATATGGAGAGCAAGTAGGCAGTTTCAATCTTCCAATGAGAATGTTAAC ACGACAGAGCAGCAGCGCCGTGATCATGCACAACGAGAGGAACAGGAAGAACAAGGACAGCGTCATCAACTACGCAGATA ACAAGAGCATCATCTATGGCAGTAGTTCCTCTCCCAGCATTTGATACAACTGGTTTAGTCAGTTTTCACCAATTATGAAT TATTTTGTTTATTTATTTTACCTAAAT
CDS sequence (LotjaGi1g1v0002200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACACAGGCGCAGATGCTGCTCAACTTCAAACTCAAATTCATACTCATCCTGCTCAGACAAAACCATGTGGTGA TGGAAGTGATAATGGTGACAAGGCCTCCTTGATTCGTCAGTCCAGAAGACCAACTCTCTCCTCGCTGCAAATACCAGCAC GATCACTGGATATTGCGTTGTCTTCTTTTGCAAAGACGGATGCTCCTTCACCTTCAGTTTCGCTGTCAAGTCCTGGTTCC GCTGCCAGAGGACTTCCTCCGAGGCCCAATTCAGCCAGAGTCAGACCTCGGGGGAAATCGTCTAGCAGGACAAAAACTTG TTCCTCCGACACTGAGAGGACAGTTCTCATTGTTCCTCATACTCCCCCATCAGATGCTCCTTTGGATATACCTTCCCCTT CAAGGTTTCGGTCTCTTACTAATAAGGCCATCTCTTCCCCGTCAATTAAAGCTGCACATTCATTACCAGTTACTCCACTT ACAACTTCAGGTGCAGAGAATATGCACGGAAGACATCTAGGGTGTGACTCTGGTTTAAGTACACTGGAAGTTCAGCAGCA CATGACTCGATCATTTTCTGTTCCAGTTAATGGCAATGCCACTAATTTAAAGCGTACAGATTCTAGGGGTTTGATTCGTA TTATTTCAGCAAAACAACATCTTGAAGCTGTAGGTGGAACATCAACCAATGATTCTTCAGTCCTAGAGATTGCCATTGAA GATGCTACAGAAGATATTTCAGAGGAAGAAGCTGTTTGTCGGATTTGTTTGGTGGAGCTTGAGGAAGGAGGGGATACTCT TAAAATGGAATGCAGTTGCAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCAGTTAAGTGGTTTAGTATTAAAGGAA ACAGGACATGTGATGTCTGCAAGCAGGATGTCAAAAACCTCCCAGTAACACTGTTGAAAATTCAGAATACTCAAACTTCT TCTAGGCAACCATCAAATGCGCCACAACAGAGAGAAATAGCTTATTACAGGATCTGGCAGGATGTACCGGTACTTACCTT GGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGGAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCGC TACCCTTCTCCGGTGTTTTAGGTCTGTTTTCATCTATGATTGCGTCAACCATGGCTTAA
Protein sequence (LotjaGi1g1v0002200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENTGADAAQLQTQIHTHPAQTKPCGDGSDNGDKASLIRQSRRPTLSSLQIPARSLDIALSSFAKTDAPSPSVSLSSPGS AARGLPPRPNSARVRPRGKSSSRTKTCSSDTERTVLIVPHTPPSDAPLDIPSPSRFRSLTNKAISSPSIKAAHSLPVTPL TTSGAENMHGRHLGCDSGLSTLEVQQHMTRSFSVPVNGNATNLKRTDSRGLIRIISAKQHLEAVGGTSTNDSSVLEIAIE DATEDISEEEAVCRICLVELEEGGDTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVKNLPVTLLKIQNTQTS SRQPSNAPQQREIAYYRIWQDVPVLTLVSMLAYFCFLEELLVSDLGPRALAISLPFSGVLGLFSSMIASTMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| Phobius | 1 | 337 | 337 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 30 | 392 | 363 | 2.8E-155 | – | |
| PANTHER | 30 | 392 | 363 | 2.8E-155 | – | |
| MobiDBLite | 34 | 49 | 16 | - | – | |
| MobiDBLite | 65 | 79 | 15 | - | – | |
| MobiDBLite | 65 | 131 | 67 | - | – | |
| MobiDBLite | 95 | 115 | 21 | - | – | |
| Gene3D | 238 | 310 | 73 | 6.8E-16 | ||
| ProSiteProfiles | 245 | 307 | 63 | 19.725 | ||
| SUPERFAMILY | 248 | 304 | 57 | 6.48E-14 | – | |
| SMART | 252 | 301 | 50 | 6.0E-20 | ||
| CDD | 253 | 301 | 49 | 4.51564E-16 | – | |
| Pfam | 253 | 300 | 48 | 3.8E-12 | ||
| Phobius | 338 | 357 | 20 | - | – | |
| Phobius | 358 | 368 | 11 | - | – | |
| Phobius | 369 | 388 | 20 | - | – | |
| Phobius | 389 | 392 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0002200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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