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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004600 |
| Transcript ID | LotjaGi1g1v0004600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G09950.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950; TrEMBL-Plants: tr|V7BDI2|V7BDI2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0004600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:816563..820021) extracted from Lotus japonicus Gifu genome v1.2.
CATTAGCTTGCCTCTGCAAGTTAAGGAGGAGACAATCCTCCCTGCCGGAGATCCTTAATATGTCATTAACATTCTATCAG AGGTAGACTGCATGTGCCTGTAAGAGCTATAACATTTTTATTATTAAAAAAGATGAAAGTTTATTTTTCACTTTTCCTAT TAAGTGACTGGTGATAAAACAAACAAAAAGGCTTAGACTTTTCATTTTCTGGTTGCCAAACAAACTTACACAAAGCAATA GCATGATACTCTGCTACAGCCGATTGTTATGCAGCAGTTCAACTCGTGCTCTTTCCACGCTTTCTCACTGCAGCTTATCT CATTCCCCACACCACTTCAAGTTTCCACCTTTGCATTTGGAATGTGATCAATACAAAAGTGCTACTTGCTTGGAAGATGC CCATCAGCTTCATTTGCAGATATACAAAACTGGATTTACCAATGATGTCTTCTTGTGTAATACTCTTATTAATGCATATA TCAGATTTGGCAGTTTGGTTTCTGCACAGAAACTGTTTGATGAAATGCCGCAGAAGAACCTCGTTTCTTGGTCTTGTTTA ATTTCTGGCTATACACAACATGGCATGCCTGATGAGGCATGTATTTTGTTCAAAGGGATCATTTGTGCTGGCCTCTTACC AAACAACTATGCCATTGGTAGTGCTCTTAGAGCTTGCCAAGAGAGTGGTCCAACTAGGCTTAAACTCGGGATGGAGATTC ATGGCTTGATGTCCAAATCTCCATATTCGTCAGACATGATTTTGTCTAATGTGCTTATGTCCATGTATTCAGGTTGCTCA GCTTCCGCTGATGATGCTTATCGTGTTTTTGATGAAATGAAAATTAAAAATTCTGCCTCCTGGAATTCTATCATATCGGT TTATTGTCGTAAGGGAGATGCAATTTCTTCTTTTAAGCTATTCTCAAGCATGCAAAGGGACGCTACAGAGCTTACGTTCA GGCCTAATGAGTATACCTTTGGTAGCTTGGTAACTGCTGCTTGCTCTCTAGTTGACTTTGGGCTGAGTTTGCTTGAGCAG ATGCTGACCTGGATTGAGAAATCTGGATTCTTGCATGATCTATATGTTGGTAGTGCATTGGTCAATGGGTTTGCAAGGTA TGGTCTAATAGATTATGCTAAAAAGCTTTTCGAGCAAATGGGGGGTCGTAATGCAGTAACTATGAATGGGTTCATGGTTG GATTGACGAAGCAGCACCAGGGTGAAGAAGCAGCTAAGATATTCAAGGGAATGAAAGATTTAGTTGAAATAAATGCAGAA TCTCATGTGGTTCTTTTAAGCGCTTTTACTGAATTTTCAAATGTAGAGGAAGGGAAGAGAAAGGGTAAAGAGGTTCATGC TTACCTGATTCGCAATGCCTTGGTTGATGCCATTTTGATTGGAAATGCACTTGTCAATATGTATGCAAAATGTGATGTCA TTGATGATGCTCGGTCAGTTTTTCATCTCATGCCTAGCAAAGATATTGTCTCATGGAACTCCATGATCTCTGGCCTTGAC CACAATGAGCGATTTGAGGAGGCAGTTGCTTGTTTCCATAAAATGAGGAGAAATGGAATGGTACCCTCAAAATTTTCAAT CATTAGTGCTTTGAGTTCATGTTCAAGCTTGGGTTGGATCATACTAGGACGACAGATACATGGTGAAGGGATCAAATGGG GGCTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTAACATTATATGCTGAAACTGATTATATCAGTGAATGTCAGAAA GTTTTCTTTCTCATGCCAGAGTATGATCAAGTTTCTTGGAATGCTTTTATTAGTGCACTAGCAAATTCAGAGGCATCAGT CTTACAAGCTATAGAATATTTCCAGGAGATGATGCGAGCTGGATGGAGACTTAATAGAGTGACGTTTATAAATATTTTAG CAGCAGTTTCTTCTCTTTCATTTCTTGAACTGGGCCGTCAAATTCATGCTTTAATCTTAAAATATTCTGTTTCTGAAGAC AATCCTATTGAGAATTTGCTTCTAGCTTTCTATGGAAAGTGTATGCAGATGGAGGACTGTGAGATTATTTTCTCTAGAAT GTCTGAGCGGAGAGATGAAGTCAGTTGGAACTCAATGATTTATGGATATATACACAATGGAATCCTGGACAAGGCCATGG ATTTTGTATGGTTTATGATGCAAAGGGGGCAAAGACTGGATGGTTTCACATTTGCGACTGTTCTTAGTGCTTGTGCTTCA GTTGCAACACTAGAGCGCGGTATGGAAGTTCATGCATGTGCAATAAGAGCTTGTTTAGAATCTGATGTTGTTGTCGGAAG TGCACTAGTTGACATGTATGCAAAATGTGGGAAGATAGATTATGCTTCAAGATTCTTTGAATTGATGCCTGTGAGAAACA TATATTCTTGGAATTCAATGATTTCAGGTTATGCACGGCATGGACATGGACAAAAAGCTCTAAAGCTTTTCACAAAAATG AAACAGCTTGGCCAACTGCCAGATCATGTCACGTTTGTTGGGGTCTTATCAGCTTGTAGTCATGTAGGATTAGTTGATGA AGGATTTAAGAATTTCAAATCAATGAGTGCAGTGTATGAACTGGCTCCGCGGATAGAGCACTACTCTTGTATGGTAGATC TCCTCGGGCGTGCCGGTGATGTTAAGAGAATAGAGGATTTTATCAAAACAATGCCGATGGAACCTAATGTCCTCATTTGG AGAACAGTTTTAGGGGCATGTGGTCGCCGTGCTAATGGCCGCAATACAGAGCTAGGACAGAGGGCTGCAAAGATGCTTAT TGAATTAGAGCCACAGAATGCTGTGAACTATGTGCTTCTTTCTAACATGCATGCTGCTGGTGGGAAATGGGAAGATGTAG CGGAGGCGAGGTTGGCAATGAAGAAGGCTTCAGTGAGGAAGGAAGCTGGGCGTAGTTGGGTGAACATGAAGGATGGAGTT CATGTGTTTGTGGCTGGAGATCAAACACACCCAGAAAGAGAAAAAATCTATGGAAAACTCAAGGAGCTAATGAGCAAAAT TAGGGATGCTGGATATGTGCCTGAAACCAAATATGCACTCTATGATCTTGAACTTGAAAACAAAGAAGAACTACTCAGCT ATCATAGTGAAAAGTTAGCAATTGCTTTTGTTCTCACTCGCAAATCTGAACTGCCAATTAGAATAATGAAGAACCTTCGG GTTTGTGGTGACTGTCACACTGCTTTCAAATACATATCAAATATTGTTAGTCGACAGATAATTTTACGAGATTCCAATAG ATTTCACCATTTTGATGGTGGCATATGTTCTTGTGGAGATTATTGGTGACCATTGACTAATGCTGAATAGTTATGGATTT TCTTTGGTGTTACAATATGGAAATACTGTCTAGGATTCTTCTAAGTGGTTCCTTATGTTAATATGCTTAAAATATCCTCG TTGAGCTTTGATATTTTAT
CDS sequence (LotjaGi1g1v0004600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACTCTGCTACAGCCGATTGTTATGCAGCAGTTCAACTCGTGCTCTTTCCACGCTTTCTCACTGCAGCTTATCTCA TTCCCCACACCACTTCAAGTTTCCACCTTTGCATTTGGAATGTGATCAATACAAAAGTGCTACTTGCTTGGAAGATGCCC ATCAGCTTCATTTGCAGATATACAAAACTGGATTTACCAATGATGTCTTCTTGTGTAATACTCTTATTAATGCATATATC AGATTTGGCAGTTTGGTTTCTGCACAGAAACTGTTTGATGAAATGCCGCAGAAGAACCTCGTTTCTTGGTCTTGTTTAAT TTCTGGCTATACACAACATGGCATGCCTGATGAGGCATGTATTTTGTTCAAAGGGATCATTTGTGCTGGCCTCTTACCAA ACAACTATGCCATTGGTAGTGCTCTTAGAGCTTGCCAAGAGAGTGGTCCAACTAGGCTTAAACTCGGGATGGAGATTCAT GGCTTGATGTCCAAATCTCCATATTCGTCAGACATGATTTTGTCTAATGTGCTTATGTCCATGTATTCAGGTTGCTCAGC TTCCGCTGATGATGCTTATCGTGTTTTTGATGAAATGAAAATTAAAAATTCTGCCTCCTGGAATTCTATCATATCGGTTT ATTGTCGTAAGGGAGATGCAATTTCTTCTTTTAAGCTATTCTCAAGCATGCAAAGGGACGCTACAGAGCTTACGTTCAGG CCTAATGAGTATACCTTTGGTAGCTTGGTAACTGCTGCTTGCTCTCTAGTTGACTTTGGGCTGAGTTTGCTTGAGCAGAT GCTGACCTGGATTGAGAAATCTGGATTCTTGCATGATCTATATGTTGGTAGTGCATTGGTCAATGGGTTTGCAAGGTATG GTCTAATAGATTATGCTAAAAAGCTTTTCGAGCAAATGGGGGGTCGTAATGCAGTAACTATGAATGGGTTCATGGTTGGA TTGACGAAGCAGCACCAGGGTGAAGAAGCAGCTAAGATATTCAAGGGAATGAAAGATTTAGTTGAAATAAATGCAGAATC TCATGTGGTTCTTTTAAGCGCTTTTACTGAATTTTCAAATGTAGAGGAAGGGAAGAGAAAGGGTAAAGAGGTTCATGCTT ACCTGATTCGCAATGCCTTGGTTGATGCCATTTTGATTGGAAATGCACTTGTCAATATGTATGCAAAATGTGATGTCATT GATGATGCTCGGTCAGTTTTTCATCTCATGCCTAGCAAAGATATTGTCTCATGGAACTCCATGATCTCTGGCCTTGACCA CAATGAGCGATTTGAGGAGGCAGTTGCTTGTTTCCATAAAATGAGGAGAAATGGAATGGTACCCTCAAAATTTTCAATCA TTAGTGCTTTGAGTTCATGTTCAAGCTTGGGTTGGATCATACTAGGACGACAGATACATGGTGAAGGGATCAAATGGGGG CTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTAACATTATATGCTGAAACTGATTATATCAGTGAATGTCAGAAAGT TTTCTTTCTCATGCCAGAGTATGATCAAGTTTCTTGGAATGCTTTTATTAGTGCACTAGCAAATTCAGAGGCATCAGTCT TACAAGCTATAGAATATTTCCAGGAGATGATGCGAGCTGGATGGAGACTTAATAGAGTGACGTTTATAAATATTTTAGCA GCAGTTTCTTCTCTTTCATTTCTTGAACTGGGCCGTCAAATTCATGCTTTAATCTTAAAATATTCTGTTTCTGAAGACAA TCCTATTGAGAATTTGCTTCTAGCTTTCTATGGAAAGTGTATGCAGATGGAGGACTGTGAGATTATTTTCTCTAGAATGT CTGAGCGGAGAGATGAAGTCAGTTGGAACTCAATGATTTATGGATATATACACAATGGAATCCTGGACAAGGCCATGGAT TTTGTATGGTTTATGATGCAAAGGGGGCAAAGACTGGATGGTTTCACATTTGCGACTGTTCTTAGTGCTTGTGCTTCAGT TGCAACACTAGAGCGCGGTATGGAAGTTCATGCATGTGCAATAAGAGCTTGTTTAGAATCTGATGTTGTTGTCGGAAGTG CACTAGTTGACATGTATGCAAAATGTGGGAAGATAGATTATGCTTCAAGATTCTTTGAATTGATGCCTGTGAGAAACATA TATTCTTGGAATTCAATGATTTCAGGTTATGCACGGCATGGACATGGACAAAAAGCTCTAAAGCTTTTCACAAAAATGAA ACAGCTTGGCCAACTGCCAGATCATGTCACGTTTGTTGGGGTCTTATCAGCTTGTAGTCATGTAGGATTAGTTGATGAAG GATTTAAGAATTTCAAATCAATGAGTGCAGTGTATGAACTGGCTCCGCGGATAGAGCACTACTCTTGTATGGTAGATCTC CTCGGGCGTGCCGGTGATGTTAAGAGAATAGAGGATTTTATCAAAACAATGCCGATGGAACCTAATGTCCTCATTTGGAG AACAGTTTTAGGGGCATGTGGTCGCCGTGCTAATGGCCGCAATACAGAGCTAGGACAGAGGGCTGCAAAGATGCTTATTG AATTAGAGCCACAGAATGCTGTGAACTATGTGCTTCTTTCTAACATGCATGCTGCTGGTGGGAAATGGGAAGATGTAGCG GAGGCGAGGTTGGCAATGAAGAAGGCTTCAGTGAGGAAGGAAGCTGGGCGTAGTTGGGTGAACATGAAGGATGGAGTTCA TGTGTTTGTGGCTGGAGATCAAACACACCCAGAAAGAGAAAAAATCTATGGAAAACTCAAGGAGCTAATGAGCAAAATTA GGGATGCTGGATATGTGCCTGAAACCAAATATGCACTCTATGATCTTGAACTTGAAAACAAAGAAGAACTACTCAGCTAT CATAGTGAAAAGTTAGCAATTGCTTTTGTTCTCACTCGCAAATCTGAACTGCCAATTAGAATAATGAAGAACCTTCGGGT TTGTGGTGACTGTCACACTGCTTTCAAATACATATCAAATATTGTTAGTCGACAGATAATTTTACGAGATTCCAATAGAT TTCACCATTTTGATGGTGGCATATGTTCTTGTGGAGATTATTGGTGA
Protein sequence (LotjaGi1g1v0004600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILCYSRLLCSSSTRALSTLSHCSLSHSPHHFKFPPLHLECDQYKSATCLEDAHQLHLQIYKTGFTNDVFLCNTLINAYI RFGSLVSAQKLFDEMPQKNLVSWSCLISGYTQHGMPDEACILFKGIICAGLLPNNYAIGSALRACQESGPTRLKLGMEIH GLMSKSPYSSDMILSNVLMSMYSGCSASADDAYRVFDEMKIKNSASWNSIISVYCRKGDAISSFKLFSSMQRDATELTFR PNEYTFGSLVTAACSLVDFGLSLLEQMLTWIEKSGFLHDLYVGSALVNGFARYGLIDYAKKLFEQMGGRNAVTMNGFMVG LTKQHQGEEAAKIFKGMKDLVEINAESHVVLLSAFTEFSNVEEGKRKGKEVHAYLIRNALVDAILIGNALVNMYAKCDVI DDARSVFHLMPSKDIVSWNSMISGLDHNERFEEAVACFHKMRRNGMVPSKFSIISALSSCSSLGWIILGRQIHGEGIKWG LDLDVSVSNALLTLYAETDYISECQKVFFLMPEYDQVSWNAFISALANSEASVLQAIEYFQEMMRAGWRLNRVTFINILA AVSSLSFLELGRQIHALILKYSVSEDNPIENLLLAFYGKCMQMEDCEIIFSRMSERRDEVSWNSMIYGYIHNGILDKAMD FVWFMMQRGQRLDGFTFATVLSACASVATLERGMEVHACAIRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNI YSWNSMISGYARHGHGQKALKLFTKMKQLGQLPDHVTFVGVLSACSHVGLVDEGFKNFKSMSAVYELAPRIEHYSCMVDL LGRAGDVKRIEDFIKTMPMEPNVLIWRTVLGACGRRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGKWEDVA EARLAMKKASVRKEAGRSWVNMKDGVHVFVAGDQTHPEREKIYGKLKELMSKIRDAGYVPETKYALYDLELENKEELLSY HSEKLAIAFVLTRKSELPIRIMKNLRVCGDCHTAFKYISNIVSRQIILRDSNRFHHFDGGICSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 450 | 450 | - | – | |
| Gene3D | 10 | 151 | 142 | 1.6E-21 | ||
| PANTHER | 16 | 163 | 148 | 6.7E-157 | – | |
| ProSiteProfiles | 68 | 98 | 31 | 9.58 | ||
| Pfam | 72 | 99 | 28 | 9.2E-5 | ||
| ProSiteProfiles | 99 | 133 | 35 | 10.6 | ||
| TIGRFAM | 101 | 134 | 34 | 1.6E-4 | ||
| Pfam | 101 | 130 | 30 | 1.6E-5 | ||
| Gene3D | 152 | 258 | 107 | 7.1E-16 | ||
| PANTHER | 155 | 274 | 120 | 6.7E-157 | – | |
| ProSiteProfiles | 171 | 202 | 32 | 7.026 | ||
| Pfam | 202 | 255 | 54 | 1.5E-8 | ||
| ProSiteProfiles | 203 | 237 | 35 | 10.008 | ||
| TIGRFAM | 206 | 232 | 27 | 0.0015 | ||
| Gene3D | 259 | 374 | 116 | 2.9E-13 | ||
| PANTHER | 278 | 365 | 88 | 6.7E-157 | – | |
| ProSiteProfiles | 279 | 313 | 35 | 8.254 | ||
| Pfam | 284 | 308 | 25 | 0.037 | ||
| PANTHER | 367 | 471 | 105 | 6.7E-157 | – | |
| Gene3D | 375 | 466 | 92 | 5.3E-17 | ||
| ProSiteProfiles | 383 | 413 | 31 | 6.511 | ||
| TIGRFAM | 388 | 416 | 29 | 0.0027 | ||
| Pfam | 413 | 459 | 47 | 2.9E-9 | ||
| ProSiteProfiles | 414 | 448 | 35 | 12.529 | ||
| TIGRFAM | 416 | 449 | 34 | 2.6E-7 | ||
| Phobius | 451 | 468 | 18 | - | – | |
| PANTHER | 468 | 574 | 107 | 6.7E-157 | – | |
| Phobius | 469 | 549 | 81 | - | – | |
| ProSiteProfiles | 484 | 514 | 31 | 5.821 | ||
| ProSiteProfiles | 515 | 550 | 36 | 9.525 | ||
| Gene3D | 529 | 674 | 146 | 5.9E-23 | ||
| Phobius | 550 | 568 | 19 | - | – | |
| PANTHER | 564 | 676 | 113 | 6.7E-157 | – | |
| Phobius | 569 | 1028 | 460 | - | – | |
| ProSiteProfiles | 586 | 616 | 31 | 5.908 | ||
| Pfam | 618 | 665 | 48 | 3.8E-7 | ||
| ProSiteProfiles | 618 | 652 | 35 | 10.271 | ||
| ProSiteProfiles | 653 | 687 | 35 | 5.952 | ||
| PANTHER | 672 | 887 | 216 | 6.7E-157 | – | |
| Gene3D | 675 | 782 | 108 | 1.1E-24 | ||
| ProSiteProfiles | 688 | 718 | 31 | 7.75 | ||
| Pfam | 719 | 766 | 48 | 4.9E-12 | ||
| ProSiteProfiles | 719 | 753 | 35 | 12.77 | ||
| TIGRFAM | 721 | 754 | 34 | 1.4E-7 | ||
| ProSiteProfiles | 754 | 784 | 31 | 6.697 | ||
| Gene3D | 783 | 921 | 139 | 2.2E-8 | ||
| ProSiteProfiles | 790 | 820 | 31 | 6.182 | ||
| ProSiteProfiles | 859 | 893 | 35 | 6.171 | ||
| Pfam | 896 | 1017 | 122 | 5.7E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0004600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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