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LotjaGi1g1v0009300.1

Overview

Field Value
Gene ID LotjaGi1g1v0009300
Transcript ID LotjaGi1g1v0009300.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G05100.1 photosystem II light harvesting complex protein 2.1; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:1204862..1210225) extracted from Lotus japonicus Gifu genome v1.2.

CCAGTCTTTGCTTGTGGCTGTTTGTCATATGGACCCTGAGTTTATGTGGTTTCAGTTACTTTGTGAAAAATAAGTGTTTT TTTTTTTTCTCTAACATGTAGTTAACAGCAAGTCACTCAAAAACTTAGAGCTCTTTCCACATTTCATTTTTCTTACACTA TCCCCACCATATTTTTCTGGTAATAGCTTCTATTTCTCCTACATTTTTTTTTATAAAAGATTACTAAGTTACCCATAAAG ATGAATAACCCTATTGTTGATGGATCAATAGTGTTGGTTACAAAATTCAAGTAAAAATGTGAGTGTCATCCTCAATCCAA TTATCTTAATGAATAATTCACTTATGAAGAAAATAACCAGCAATGGTTGCCCTGGTGGTGAAAGACTTGGGACTTGGGAG TGTGCTCCTCTCCAGGTCTCAGGTTCGAAACCTACTGGTGAATCAAACATTGTTGGCCAGGCCATACAGAGCGAAGCTCT GGCTTCAATTGGGCCCCCCGCAAGTGGTCGGTGGGATTGGTCCCCCAGGATTAGTCAGTCCAGTGGGCTGGATTACCTGA GTTATCAAAAAAAACTTATGAAGAAAATAATATAGGGATAAGTGTAATTGTGTAAATACTGAGGTGTCAAATAATATTAG CATGGAAAAATATGTGATGGGCAATGGGGTTGCTCTGTAGTCTGTACCATCAGCCCAATACAAACCCTCTGCCAAGTTTA ACTCTTTCTTTCTTAACTTTGCTGGACCTGATTTCTGTGGCTTACATTCACCCTCCACAAAACATCTGAGCAAGTGGACC TGTGCATCCAGATGGCAGAATGAGAGCCAATTTCTCAATGCAAAATATCAGGTTGAGAATCCACATCCAAATCCACCACC AATGAGATGTTGCTGACTTGTGCATATCCTCATCCACAATATCACATTACACTTCTATAAACCTTGTGAGCTTCTTCATC ATTCTGCAGAAGCAAAACACACTAGCTAGCACCAAAGGAAACACTACCAAAGTGCAAGAAGCATAACATAACCATGGCCA CCTCTGCTATCCAGCAATCAGCATTCACTGGCCAGACTGCTTTGAAGCAGGGAAATGAGCTCCTCCGCAAGGCTGGTGGC TTTGGCAAAGGTCGCTTTACCATGCGTCGTACTGTGAAGAGTGCTCCTCAGAGCATTTGGTAAGGAAGTAGTAGTTCAAT TCAAGTAAAATTACCCTGCACAATACTTCAACTACAAAATATTTCCAACGTTTTTTGTTTAATCTCAGTAGTTATGGTTT CTAAATTCTAATGATCCTCACCTCCTCTATCTCATGTCTCTTGAGAACATAATACTAATTCTCAGCAAGATGGAGCTGGC CCAAAAGCCAGGGATCTTCCATTTTAATAATAGCATGTTTTGGAATGCGATCTGTAATCACGTTTGAAGCCAGAATCAAT TATGAAGAGTAACTTATGTACCTGAGAATTTATTCTGAGAGAAAGAGGAGAAAAAGAAGCAAATCTAATACATCTTTGGA TCAACTTCTCTTTTTTTCATAATCAATTCTAAACTAGAAGTCACTCACAGAAGCTTCTCCTCAAAATTGATTTTGGCTCT AGAAATAATTGTAAAAGAATTTCTAAACATGAACTAAATATGCAATAAATCATATTAAAGGCTAATAGCTCATGATATAG CAATTACATATAGTTATGTTTGTCTTGTAAAGTTTAAAAATAACATCCTGTGCAAACATTTGAAGTGAGGTCCTGACAAC TTGTTTCAGAATGTAATAACATGTTGGTTGAGCTTATTTTTCTCAAAATCAATTCTGACGTCAAGTTTAGGAGAAACTTT TGTTCATAATTGATTTTGGCTTTGGAATCAATTATAAAAGAATTTCCGAAAATACACTCACTGACTTGGCATGACCTCTT GTTAAAAACAGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCTTTCTCTGAGCAAATTCCATCATACCTGACTGGTGA ATTCCCTGGTGACTACGGATGGGACACAGCTGGATTATCAGCTGACCCCGAAACCTTCGCCAAGAACCGTGAGCTCGAGG TGATTCACAGCAGATGGGCCATGCTTGGTGCCTTGGGATGCACCTTCCCAGAAATCCTTGAAAGGAATGGTGTCAAATTC GGTGAGGCAGTGTGGTTCAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTAGGCAACCCAAACCTGAT CCATGCTCAGAGCATCCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTAATTGAAGGCTACAGGGTTGGTGGAG GACCCCTTGGTGAAGGACTAGACCCACTTTACCCAGGTGGTGCCTTTGACCCACTTGGTTTGGCTGATGACCCTGATGCA TTTGCAGAGTTGAAGGTGAAGGAACTCAAGAACGGTCGATTGGCAATGTTCTCCATGTTTGGCTTCTTTGTTCAGGCCAT TGTTACTGGCAAGGGCCCTATTCAGAACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTTTGCCA CTAACTTCGTCCCTGGACAATGAGGGTACCAAGATATGCCTTTTCAGCTGCAATCTTCTGCTCCCATTTTCAGTTCTGTT GTGTTTAACTTCATTTTCACTGATGTAACTACACGAGCCGAAGAAGAATCTGTATGAGAACGATTGCATGTTAGACATGA ATGAGTCCCTAATATTATCAACTCTTATGCATGGATTCATGATATTGACTGGGTTTTTTTTTTGAAGGGTGATATTTACT GGGTTGTCTTGCACAAACTTAGTCATGGTTTTCTATTTTTCCCATAACCTGAACCGTTTTTCCTCAAAATGATAATTAGT AAAAACATGGCAACCAAGTTCAAGGCCTCTACTGTATGAAGGTAATCAAACAAAAACCCAACAACATGCAGAAATTCTTA AACATTTAATCATGAGTTGATATCCTTTTGCTTAAACTTCAAGATAACAGAATATGCTTACACAAACTGAATGACTGTAA TTATTAAATCTGAGGTGATAGTAAACTAATTCTACACATTGGAAATGACACCAGGAGCATAAAATAATTTGATTATAGTA CAATTCCATGAAGCTAATCATCTTTATCAAGTGATAAAGAGGCCTAAAGGAATTTCAACCACATAGCTATTATTAGCTAT AAGCCTTCAACCATTTTTTGAGAAACTGATACCTCGATAGGGAAGCTGGGAGCTTCAGATATGAGTGTCAAAAGCACCAC AGGGATCCATGACTTGCTAATGGAAAGGCAATCACCAAAAGTCATTGCAAGAACAAGTTCCTTTTTTGAAATGATGGAAG CGGCTATTATCTCTCACTATTATTTCACGACCATAGATAGCAGAGAGGAGTTTTGTAACTGCGTGGCAATCATTACAAAC TCGAAGGTTCTTCATAATGCGAATAGGCGTCCGTCTTTCCATGTTTAGGAGACCAAATGAGATGGCCAACCTCTCACTAT GGTTCTCTAGTTCAGATTCTTTTTCTTTTTCACCTTCAATATTTAGCAGAACTTGGCTTGTATCAGGAACATGTCCTGCC AGTTTCAGTTTCTTACTCATCTCCCTCAACTTAGCATATATAGCCTTGGTTTGGGGATGCGACTTGTCACCCACAATAAA CCGGTTCAGTTTACCTCTGTGCTCAACAATGCTGCATCCAGCATCCTTTAACACTCCTCTCTCCTTCATCATTTCTCTTA CATGTGAAACTTTATCCCACTTTCCAGCTGCAGCATAAATGTTAGAAAGTAGAGTATAACACCCTGTAGCATCAGGATCC GCCTCAATTAAATTGTGAGCTGCGTATTCCCCAATTTCCAAGTTTCCATGGTTCCTAGAACTGCTAAGCAAACTCATCCA GATGACTTTGTTTGGTCTCATTGGCATGCTCTCAATGATGTTTTTTGCCTGCTGAAGATGCCCAGCTCGACATAAAATGT CAACAAGGCAACCATAATGTTCAACTGTGGGCACAATCTTATATTCATTTATCATCATATCAAAACATTTGTTTCCCTCA TCTACCAAGCCTTTATGACTACAAGCATTTAACACACCAATGAAAGTTATAGCATGTGGTTTCATTCCAATTCTGCGCAT CTCCATAAAAAGTTCTAGAGCTTGGTCAGCCAAACCATGCATTCCTAAGCCCACAATTATAGCTGTCCAATGCCCCAGTT TCTTGTTGGCTATTGCTTTGAAAACAGCCAAAGCACTCTCTATGCTGCCACACTTAGAATACATTTCTATCAGTGATGTG CCAAGTACACCATCCAATTCAAAGCAATGCTTAACCATAAACGAATGGATCCATCTTCCATTACCAAGAACAGCCAAACC TGAAACAGCAGAAAGAGCACTGAGTATTGTGACATGGCTAGGCATGAGGCCCTCTTTCAGCAACACTTCAAACAATTCCA TAGCTTCAAGAAACCGCCCGTTGAGCTGGTACCCGGATATCATCGAGTTCCAACTTATCAGATTCCTCCCCGGCATCTGG CCAAACAATTGACGCGCGAGATTGATTTTACCAGACTTCATATACCCATTGATCATGGCATTCCAAGAAACCGAACTCTT CTTAGGCATCTGATCAAACACCTCTCGTGCAGCCTCAACCTTGCCGCATTTGGCAAGCCCATCAAGCAAAGCAGTCCAAG TAAACGCGTCCCTGCTGGGCATTTCATCGAACAGCTTCATTGCCACCTCAACATTCCCATTTCTCGCGTACCCATCAATC AAAGAGTTCCATGACACCACATCTCTATCAACCATTTTATCAAACACCTTCCTAGCCAAACCCATCTCACCCCACTTAGC ATACATGTTAACCAAACTGCTCTGCACAAATTTATCAAAGCCAAACCCGATTTTGAGGACATACCCATGAATCTGTTTCC CTTCCTGAACAGCATGCAAGCGAGAACACCCCTTGATGACGCATGGGAGAGTGAAACCATCAGGGAGGAGGTCGTGATGG AGCATTTGGCGAAAGAGGAGAAGGGCATCGTTGGAACGGTGGTTGTGGACGTAGCAGCTGATGATCAGGTTCCATGAAAC CAAAGTGGGTTTATGCATGGTGTCGAAAACGGAACGAGCATGGTTGAGGTCGTTTGTGTTGGGGTTTGCATAGAGAGATA GAAGGCGTGAAGAGGCATCTGGGTTGTTCAAAGTGCCTGATTTGAGATACTGAGCATGAAGCTGGTGTGGTTCTGGTTGT GGAAGGAAGGAAGAAGAAGAAGAATGCACCAGTCTCTGCATTGCGATTTGCAATATCCACAACCATGTAACAGTAACCTT TTTC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCTCTGCTATCCAGCAATCAGCATTCACTGGCCAGACTGCTTTGAAGCAGGGAAATGAGCTCCTCCGCAAGGC TGGTGGCTTTGGCAAAGGTCGCTTTACCATGCGTCGTACTGTGAAGAGTGCTCCTCAGAGCATTTGGTATGGCCCTGACC GTCCCAAGTACTTGGGTCCTTTCTCTGAGCAAATTCCATCATACCTGACTGGTGAATTCCCTGGTGACTACGGATGGGAC ACAGCTGGATTATCAGCTGACCCCGAAACCTTCGCCAAGAACCGTGAGCTCGAGGTGATTCACAGCAGATGGGCCATGCT TGGTGCCTTGGGATGCACCTTCCCAGAAATCCTTGAAAGGAATGGTGTCAAATTCGGTGAGGCAGTGTGGTTCAAGGCTG GTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTAGGCAACCCAAACCTGATCCATGCTCAGAGCATCCTTGCAATC TGGGCTACTCAGGTTGTGCTCATGGGATTAATTGAAGGCTACAGGGTTGGTGGAGGACCCCTTGGTGAAGGACTAGACCC ACTTTACCCAGGTGGTGCCTTTGACCCACTTGGTTTGGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAAC TCAAGAACGGTCGATTGGCAATGTTCTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTTACTGGCAAGGGCCCTATTCAG AACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTTTGCCACTAACTTCGTCCCTGGACAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWD TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI WATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ NLYDHVADPVANNAWAFATNFVPGQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21649:SF33
1 265 265 6.9E-171 –
PANTHER
PTHR21649
1 265 265 6.9E-171
IPR001344
SUPERFAMILY
SSF103511
48 262 215 1.23E-77 –
Gene3D
G3DSA:1.10.3460.10
56 258 203 1.3E-95
IPR023329
Pfam
PF00504
66 231 166 4.5E-49
IPR022796

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009765
Biological process Photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0009300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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