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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019200 |
| Transcript ID | LotjaGi1g1v0019200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2389569..2394398) extracted from Lotus japonicus Gifu genome v1.2.
AGTTCAACTCAACCATTTCACTTTCTTCAACAGAACTCCGAAAACAGAGAGAGTTTGAGAGAGATAACAACTACCCATTT TTCCTTTTTACTCTCTCAATGCACTGGAACTAGAAAGATTTGATTTTTGTTCTTGTTGAGACATAAAGACTGGTTCTTTA AACCCTTGCAGCATTGTTCATCTCCTTCTCTTTGATGGGTAAGCAAGAAACTTTGAAAAGTTTGTTTCTTTATCTCATAC TCTCTTAGATTGTTGTTGATTTTGCAAATGTGGGTGTGTTTGGTTGTGACAATTTCTTTCTTTCTTTCTTTCTTGTATTT TTTTTTTGTTTTTGATTTTGTTGGCTTTGGAATTTTTGTTGTGTGATTTGCTTTGAGTCTTGGAGAGAACGTTTATGGTA ATTTCTGAATGTGTTTCCTTATTTTTCTACATTTGGAGAGAGGCCCATTTTCATTTTGCATTAAAAATACTTCCTTTTTG GGTGGTGACAGAGAAAATTGAGGAAAATAAAGTGCAAAATGGAGTAAATTTTTTGTTTTGTCAATTATAAAAATCTTACC CTCTTCGTGTGTTGTTGCTAGGTTATTCATAACTTGGTTTATGGAATAGGGTACCTTTTTGTAGAAGAACATAGCCTTTT GTGTTTCTGTTAGGTTTGTAGAATCTTTTCCCCAGAACTAGTACTTTTTTTGGTCAGTCATTTCTTAGGGTTTGTTTTCT CTGCAAGTTTCCTTGTAAAGTGAAGATTGTTTTTTTCTTTTCATTTTGTTGTTTTCCATGAGTTTTGTGCTAAATCTTTA ATGATGCGGAGTTGAGATTCTTTTTACTAGTTTTCTGATCAAGTGTTCACTCAGTTTTGTTAATTTTGTTTTAACTTTTC GCAGTGGTGAGATAAAAGCTATGGATATTTCAGACTACACAAGGATTGTATTTGACAAAATTCAGAAATTTGAGCCTGAG CATGCTTCAAAGATAATTGGCTATCTTCTTCTGCAAGACAATGGTGAGCAGAAAATGGCGAAATTGGCTTCGTGCCCGGA CCAATTCATCGGCGAAGTCGCGTTTAAGGTGAAAACCGATCTTCAAAGGTTGGCTATTAAATCAGCCGTAATTCCAATTT TGCCTAACCCTCAGCAAGGTTTAAGCCATTTAGCAGTAATCTCTCCCAGAAATCTTCCTTCGCCACCAAACTTCCAGGTT CCCTCTCCCTATTGGGATCCACTGTCTGCTAGAAATACCAATACTAATCCAGAATATAGGGCAATGAATTACTTGGATTC TATGATAGAACTTCAGAAACAGACACAGTTGTTGAGTTTAGAGGATCATATAGAACCTGCAAATACTGGAACTGGAGGAA TTGGAATTCCCAGTGATTACTTTGGCTTAGATGCTTCTGCAGCTAATGTGGGTGGAAAATCTGGCAGAAGGTTTTCGAGC CTGTCAGAATTTCCGTTGAAGATCTGTCACTATTTTAACAAAGGATACTGTAAGCATGGAACTAACTGTAGATACTATCA TGGACATGTACTCCCTGAGAATTTCTCTCAGATGTATGGAAATGACACTAATAGTGAGGATCAAGTGTTTTCACAAGGGT CACTAGCACAGTTGGAGTCAGAAATTATTGAGCTCCTGAAACAGAAAAGAGGCCATCCAATGTCAATTGCTTCACTGCCA ATGGCGTACTACGATAGATATAAGAAGGTATTGCAAGCAGATGGTTATTTGACTGAGAGCCAGAGACATGGTAAGTCTGG CTATAATTTGACAAAGCTTCTTGAGCAACTGAATGGCAGTATTCGGCTAATCAGCAGGTGACCTCTATAAACTTCTATGA GCCCGTTCGGTTATAGACCAAAGAGCATTTATTGGAGGTTATATGGTATTTTTTCTAGTATAGAAGCTCCTATAAGTGCT ATTTGGTGCATTTTCAAACAGGCTCATATGTTCTTACATATTGAATTGAATGTCTCTTACTCTAGTTTGAATTTTATCAT GGTTGATTTACAGGCCTCATGGGCAGCATGCGGTGGTTCTGGCAGAAGATGCCCCAAAATACATTAGAGAGGGTGATTCT GCTCAAAATATTAGTGCATCGCGACAAATATATTTGACATTTCCAGCTGACAGCACTTTCACAGAGGAAGATGTCTCAGA CTACTTCAAGTATTTTTTTGGTTTAACTACCTCAGCATATTCTCTTCTTTGCAGCTAATTGTTTGTGTTGATGAATTTCC TTTACATATTTGGCTTTGTAGCACATTTGGGTGTGTTGAAGATGTTAGGATCCCGTGCCAGCAGAGAAGGATGTTTGGAT TTGTGACTTTTGCTGACCCAGAAACTGTTAAAATGATTTTGGAAAAGGGGAATCCCCACTATGTTCGTGGGTCTCGGGTG CTTGTGAAACCTTACAAGGAGAAGGCTAAGACTTTAGAAAGGTGAATTCCTTGTCTTTTCCTTTCATATGGATTTATTTA TAAGCTCTTTATGGCTTCAAATTCTCATTTAATATTTAGATAAGCTTGAAATGACTATTTAATTGTCAATTTGTCATCAA TCTTGACAAGAGTTAGTATAATTTAGTGAAAGCTTATTCCTTGTTGTGATTCTCTAGTTCTTAGTTCTTCCTCTGTCCTC AATCCCCCTATTTATAGTACTATTCAAACTTCAGGGGTATATCTTAGTCTTTATAAAATGTTTTTGCGCAAGGTTTTCCT TCTAGAGATAAGCTATTATTTCTCAGAACGTTTTCCTTAGTCCTAGAGGAATACACATTTTTTTCTGCTTCAGAGGGTAC ACAAAACACAAAACTTATGATTAGTATATAGTTATCTGAAGTTTCAAAATTTGTCTATATACTAGTATATAGTTATACAT GCATTTTGAAAAAGTTTCTATATTGAATATCTTTTTCCCCATTAATAATTTCTGTATCTTCCAATTTGGATGCAGGAAGT ACGGAGACAGAGGAGAGCACTCTGTTTATTGTTCACCACACTATGTAGACTTGGACTCTGAACTTGACTCAAGTATGACA TAATCTACTTTGAAACCTAATTATCTCTTATGGTTAACATATTACAACAGCTTATTTTATGCCTTTATGATTAGCATTCT AATGTTATTTAGCTGTTTCAATTGAGCCTATTTGAATGCGAACCCAAGAGCACTTTTTAGAGCTTATCTAGTTTTTTTTT TCTGGTAGATAAGATCCAATAAGTTCTCTTTAGTTTGTATCCAAACATGATCAATTATTTGCGATGTGTTTGTGCTTCGC TTTCTTTCTTTTTTGTGGAAGACGCCATTGAAAAACCCAATGCAAAATTCATGTAGTGCCAATAAGTACTGGGAACCATA GATCTATAAGGAGGCAGCTGATTGAAGAGCAGGAGCAAGCCCTTGAATTTCAAAGGAGACGGCTTGCACAGTTGCAGTTT CTCCAACAACCTTTGTCCACTTCGCCTCATTTTGGTGTCTCCATTGATGAATTAAGAGTTCCAGATGGTGTGTAATAATA CAGATTACATTTTTGCTTATCAAGTTTCAGTGTGTTCTTCCTATCCTTCTTTGTTATGCTAATTGAAGTAATTTCTCTTG CAGATAATTTCAATCTCCAGCCTTCAGAATCTTTAAGTTCTGCTCCGAATGATAGACCCAAGCAGGCAGACACCGATTCC TCTGATGAGAACAGGCATGCTTCAATTTCTAATAGATTTCTATTGCTCTTCCACAATCGTCTGCTATGCCTTTTTATATA TTTTGTAATTACTCCAGTGTATTCTTTATAGTTATACCCATAGTTAGTAACTTGACTTGTGATATATTACTTGGAAATGG AATGTACATTTCAAGTCCTATGGTTAAGTGGTTTTGTCAATTCCTTATTTAAAATCCCTAATTCAAACACCTATTCATCA TTTTTATGACGGCCATACTTTTCCTGTCACAATTCATGTTTTGTTAACTATGGATGATATTATTGTTTATTGATTTATTT TATTTGTAATTTTTTACAGCCATCAAGGATTCGATCTCCCGGACAGTCCATTTTCTTTTGCCAACATATAAAGTGAGATT TAGGCAGTCATGTAGTTTCAGAAACACACAGGAGAAATAGAGTTACAACAGATCCAGGCCTAAGGCAGAAGCTTTTTTTT GGTACATAATACAAGAACTATTTTCTCAACTAGCTCAGCAGTATAGTCAAATTCAGCAACTACATACAAGCAAGTGACAT TTGAAGAATTTCCTCTTCACAACTGGGATTGCTGGAATTATAACATTTAATGATACATGTAAGAAGGTTATAGTTTTCAT CAGACTTGGTTTTTAGCATAATCATGTAGTTACTAGTTAGGACTTTTCCAAAGTTATAGTGAATGAAAAAAATCAGGTAT ATGGGTTATTACAGTTTTAGGTGAAGTTTGAAGAACCTTTTTTGAATCTATGGTTATGGTCTGAGGAGCTAGTTTACTCA GTATGAACAACTTCAATAGCAGTTTATGGTAAGCCAATTTGAAGTATTTTGCATTCTTTATTAACTTTTGGATGCCTCTT CTTTGTCCTGATAAAATGGTTCAAGTGCTTAAGTCATAATCAAAATGATTTGGTTTCGATTTGGAACACCTTAATGCAAA TAACTTGCTTCCCAGCCATAAGTGTGTGGTGTTTATTTCTTTATTTGTCCTGTTTTTTTGGCTTTGTTTGGCATAGATTT TTGTGGTAGTGAGAGGAATATTTGTCGTTCTACATGAGTTTTCAATCTTGAATATGAACGACGGGAATTGAGTGATGCGG GCCATCATTGACAAAGACATTGGTGAATGC
CDS sequence (LotjaGi1g1v0019200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTACACAAGGATTGTATTTGACAAAATTCAGAAATTTGAGCCTGAGCATGCTTCAAAGATAATTGGCTATCTTCT TCTGCAAGACAATGGTGAGCAGAAAATGGCGAAATTGGCTTCGTGCCCGGACCAATTCATCGGCGAAGTCGCGTTTAAGG TGAAAACCGATCTTCAAAGGTTGGCTATTAAATCAGCCGTAATTCCAATTTTGCCTAACCCTCAGCAAGGTTTAAGCCAT TTAGCAGTAATCTCTCCCAGAAATCTTCCTTCGCCACCAAACTTCCAGGTTCCCTCTCCCTATTGGGATCCACTGTCTGC TAGAAATACCAATACTAATCCAGAATATAGGGCAATGAATTACTTGGATTCTATGATAGAACTTCAGAAACAGACACAGT TGTTGAGTTTAGAGGATCATATAGAACCTGCAAATACTGGAACTGGAGGAATTGGAATTCCCAGTGATTACTTTGGCTTA GATGCTTCTGCAGCTAATGTGGGTGGAAAATCTGGCAGAAGGTTTTCGAGCCTGTCAGAATTTCCGTTGAAGATCTGTCA CTATTTTAACAAAGGATACTGTAAGCATGGAACTAACTGTAGATACTATCATGGACATGTACTCCCTGAGAATTTCTCTC AGATGTATGGAAATGACACTAATAGTGAGGATCAAGTGTTTTCACAAGGGTCACTAGCACAGTTGGAGTCAGAAATTATT GAGCTCCTGAAACAGAAAAGAGGCCATCCAATGTCAATTGCTTCACTGCCAATGGCGTACTACGATAGATATAAGAAGGT ATTGCAAGCAGATGGTTATTTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAATTTGACAAAGCTTCTTGAGCAAC TGAATGGCAGTATTCGGCTAATCAGCAGGCCTCATGGGCAGCATGCGGTGGTTCTGGCAGAAGATGCCCCAAAATACATT AGAGAGGGTGATTCTGCTCAAAATATTAGTGCATCGCGACAAATATATTTGACATTTCCAGCTGACAGCACTTTCACAGA GGAAGATGTCTCAGACTACTTCAACACATTTGGGTGTGTTGAAGATGTTAGGATCCCGTGCCAGCAGAGAAGGATGTTTG GATTTGTGACTTTTGCTGACCCAGAAACTGTTAAAATGATTTTGGAAAAGGGGAATCCCCACTATGTTCGTGGGTCTCGG GTGCTTGTGAAACCTTACAAGGAGAAGGCTAAGACTTTAGAAAGGAAGTACGGAGACAGAGGAGAGCACTCTGTTTATTG TTCACCACACTATGTAGACTTGGACTCTGAACTTGACTCAATGCCAATAAGTACTGGGAACCATAGATCTATAAGGAGGC AGCTGATTGAAGAGCAGGAGCAAGCCCTTGAATTTCAAAGGAGACGGCTTGCACAGTTGCAGTTTCTCCAACAACCTTTG TCCACTTCGCCTCATTTTGGTGTCTCCATTGATGAATTAAGAGTTCCAGATGATAATTTCAATCTCCAGCCTTCAGAATC TTTAAGTTCTGCTCCGAATGATAGACCCAAGCAGGCAGACACCGATTCCTCTGATGAGAACAGCCATCAAGGATTCGATC TCCCGGACAGTCCATTTTCTTTTGCCAACATATAA
Protein sequence (LotjaGi1g1v0019200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQRLAIKSAVIPILPNPQQGLSH LAVISPRNLPSPPNFQVPSPYWDPLSARNTNTNPEYRAMNYLDSMIELQKQTQLLSLEDHIEPANTGTGGIGIPSDYFGL DASAANVGGKSGRRFSSLSEFPLKICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEII ELLKQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIRLISRPHGQHAVVLAEDAPKYI REGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSR VLVKPYKEKAKTLERKYGDRGEHSVYCSPHYVDLDSELDSMPISTGNHRSIRRQLIEEQEQALEFQRRRLAQLQFLQQPL STSPHFGVSIDELRVPDDNFNLQPSESLSSAPNDRPKQADTDSSDENSHQGFDLPDSPFSFANI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 541 | 540 | 1.9E-256 | – | |
| PANTHER | 2 | 541 | 540 | 1.9E-256 | – | |
| Gene3D | 179 | 247 | 69 | 9.7E-6 | – | |
| ProSiteProfiles | 180 | 207 | 28 | 14.802 | ||
| SUPERFAMILY | 183 | 205 | 23 | 3.66E-5 | ||
| Pfam | 231 | 308 | 78 | 2.1E-9 | ||
| ProSiteProfiles | 231 | 315 | 85 | 10.959 | ||
| Gene3D | 314 | 425 | 112 | 3.9E-13 | ||
| ProSiteProfiles | 333 | 408 | 76 | 11.588 | ||
| SMART | 334 | 404 | 71 | 3.4E-9 | ||
| CDD | 335 | 404 | 70 | 7.48455E-36 | ||
| SUPERFAMILY | 343 | 417 | 75 | 4.21E-14 | ||
| Pfam | 344 | 400 | 57 | 3.5E-8 | ||
| Coils | 456 | 476 | 21 | - | – | |
| MobiDBLite | 497 | 544 | 48 | - | – | |
| MobiDBLite | 500 | 517 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0019200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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