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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0024000 |
| Transcript ID | LotjaGi1g1v0024000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trigger factor; TAIR: AT5G55220.1 trigger factor type chaperone family protein; Swiss-Prot: sp|Q8S9L5|TIG_ARATH Trigger factor-like protein TIG, Chloroplastic; TrEMBL-Plants: tr|I1JJE0|I1JJE0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0024000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2886141..2893908) extracted from Lotus japonicus Gifu genome v1.2.
CCCACATGGTGATAAACGGATAATGGTATTATCTTCAAAGAAAAAAGTAAAAAAAGTAAAACATTCATGCCACAACGCTT GTGGTATAACTATATTAACTATATAATCTCCAAAGAAAAAATATCTTCATTATCATCCAACACTACAAGCTCTGTGTTTG TTGAGCTGTGGAGTGAGTGAAGCAGCAAGAGTGGCTCATGACCATGGAGCTGTGTACTCAAACCTTCACCAGGGTTCTCC TTTTCAACAACCCTTCTTCTTTCTCTTCCAGTGCTCTTCTTCTTCGTGCCAACACTTCTACTAGACCCTTCAAATCCAAC TCCTTCAAGCTCTCATCTCTTACCCCTCACATTCACCTCTTCCAACCCTTTATCCATCATCACAGTTCTTCTCCCTTTAA AGTTTCAGCTTCTTCTTCAGTTGCAGTTGACGCAGAAAAGGACCGTCTTCCAGCTGATTTGATTGTCACTGAAACAGAGG AATCCAATTCCAGAGTATGTTCTGTTTTATTCAATCCTCTCTGTTTAAATTTCAGGGTTTATTTGAATATTTCATAGTGA TTGGCTCAAAATTCAGGATGTGAATTAGAGTTTGTTCTCTGGTCTATAATTTGTAAAGGGTTATGATAATTATAAAATCT ATGTAATGTGTTTGAACAATTAGGACCATTGAAAACAGGGAAGTATTAGGGTAAAGGGTATGATGTTTGTATGCAGTTTT CATTTTTTAGTTAATATATGTTTTATTTATTTGTAAAATTTTTACATGATTTTCATTTTATGTTTCTTACAGAAAACAGA TTGATAATGAAGTGCTGTATTTGTAATTGTTATTAAAATATAGAATAAAAAGTTAAAAACTGACCAAACAACCCCTAGTG TAGCCATATTGACCTGCTCTAGTCACCTTCATAGTGTTAGCTTGTGCAAGTATCATTAATCAATTACAAATGAAACCCTT AAACTAAGATCAAAGTAGATGTATCCTTTGATCCAATATTCATATCACTGAATATGTATTTCTTTACATCTCTCTCTCTT TGCAGGTTAGGTTGCATGTGGAGGTGCCACCATTGGTATGTGAGGATTGTTACAATACAGTCATAGCTGAGTTTACAAAG CAAGCAAAGGTGCTGTTGTTTACGCTTAATTGGAGATTATAACCTCTTTACATTGTCTTCCATATATAAACTTTGAGGTT ACTAAATTTTACAGTCCTAAGATTTGTGCCCTAACCTATCATATGAGTTTTACTATTTCACCATATATAACAAAGTTGTT TACTTATTGCTCAAGATTGTCAAGGATCTCAGGTTTTTTGGCATCGAAAGGAAACATGTTAGTGATATGAGCTAATTCAG CTTTATTATATATCAGCAGATCCCTGGATTTCGCCCTGGAAAGAAGGTTCCGGAAAGTATCCTTATTAGCTATGTTGGGA AGAAAAATGTTCAGGGGGCTACAATTGAATCTATATTGAAGAGGACCCTTTCACACGCTATGGAATCGGTATGTTGCAAT ATCGTTTTATGTTTTCTTATTTTCTTAGTCCTCACTTTCTTCTTTGATGTTAGTGTCCTAGAGAATTTTGGGTTCATTGG GTTTATTTGCAATTATATATGTGAATAATTCCTTGATCTTGGTTGGGGAACTGACATGTAAGTCATATCCACCATATTAC TGAAATCTAGCTTCATTCTAGAAAGACAAGCCAATCAGTTTGTATACATTGCAAAAACACAAACTGATAATCAACCTTTC GTCATTATCAAATTCTATGATAGTGCAATGGTGCCTAGTGCAATTATCTGAAATGTATTTGTCAATTAATTTCCTTTGAC ATGAGGACTTGATACCAATCAATTGATAAACTATAATTTCCGGATCCTCCATCCTAAGTTATTACTGAAAAAGTGGATTA TTGGATCAAATTTAATTTTGATCTTGCGTTTAAGCATCTCGTAATCAATTATCTTTTATAGGTTACTGGAAGGGCTTTGC AGGACTCAGTACGTATAGTGACTAAATTCTCTGACATGGAGGAGACATATTCTTCTCTCGGGTTTCTTAGGTAATCTAAA AGTTACTGTGTGAAATTCACTTTCTGTGATACTACTTTTTTTCTTCCTCTCTGAATCTGTTATACCACAACCACCTTCTA CCATAAAATAGAGAAAAGAAAGATTTCCATGAAGACTGTTCACATTATCAGCCTATGACTTGTACATGTAGATTATATTA ATTATTATCACTGATTTCACTTCTCCAGATATGATGTCATTGTTGATGTTGCACCAGAAATCAAATGGATTTCTGACAAT GCATACAAAAATTTGAAGATTGTGGTTGAGCTAGACAGCGATATAGATGCTCATAAAGCATCCGAACAGGTATTTAGAAG GCGCTACAAGTCTACTGGTGCACTGAAAGTTGTCAATGACAGAGGGCTACAGGTGATTGAATTTAATTTACAAGTCTATT ATTCTATATGCTAGGTTTATATTTTTACTACATCATATCATACTAGCAAATATGTTCATATGACTTGAATACTATTTCCT TTTTATGTATTTAGTATTTTCTTGACAATAATGTTTTTATTAATTAACATCAATAGTCTACCTAAAGCTAGCAGGCTATT ACAAAATACTTCTTTCTGTTCACAGGTTGGTGATGTTGCTGTTGTTGATATCTCAGCAACAACCATTGATCAAGATGAAT CCAAAATTGTAAATATTCCTTCTGCTGAAAGTAAAGGTCTGGTGGTGTACTTGAAGAATAATTAACTGACAAGTAATAGC AATTTTTTTTAATAATATATCATGAACATTTTTCCTCTAAACATCATATTACATGTGCAGGATTTAATCTTGACACAGAA GATGGTGATAGAGTATTACCGGGTTTCATTGATTCGATAATTGGAATTCGTCGAGGTGAAACAAAGTCATTTCCTCTTGT ATTTCCTGAAACTTGGAAGCAAGAAAGTCTTCGTGGTGTTCATGCTCAATTTACTGTAAGTTTCTGATGTTGAACAAAAA AAAATCAATTATAGTAGGAACATGAGCTGGCATAGTAGTTTTTCCTTTTGGTCTTTTGGATACCACCTTGTTCACCACAA TTTCACAAATTCATTTTGTTCATTAGTAACGCACAGTTATCCTCTTTGATTTGAAAATCGTGGAAGTTGCATTTTCTTAC ACACACACACATATATATGCCTATTGAACTTTAAGGGGTCATGCTTATTGAGCTTCTCTTTCATTTATAACAGGTTGAGT GCAAAGAGCTTTTTTACCGAGATTTGCCGGATCTGGATGATTCTATTGCTGATAAGCTTATCCCTGGATGCACCACAGTG GAGCAGGTAACTTTTATTTTTTTTGTGAAGTGTAAGCTGAAGAATTATATTGAGTTAGTTCAGAGTTAAACTCTCCAGCT TGAATTTCCAGGTGAAAGACTTGTTGCTACAGAAATGCCTAGAAGTGGAGCAAACAGCTAAAGAACAAGCTACTGATAAT GCTATCTTAGATCAGATTTCTAAGGTAACATTACATCATTAAGTATCAGAATTAGGTTGAATATCTCCTCTTCTAAATGA GAATGTACCTTTCCACATGTTGTTTTCAAAATGCATGCTTCCTATACCTTGCGCAATGATGTGCATCTGACATGAATACA CACTTCGGTTTATCGGGTGTAAGAAAACGTTGGTGTCTGCCTACTTGATCACAAAATATCTGTTCACCTTGTCTTTTTTC AGATGGTAGAAGTTGATATACCTCCATCCTTGTTTGAAGAACAAGGTAGACAGCTTTATGGAGGCAACCTATTAGAAATG CAGGTACGGATCCATTTGCAAGTTACAAAAATTGTAGGCCTATCAGGCAACTTGGTTTCCAACAATTTTATCTTTATTTA TGATTTCACTACAAATAAGTTCCTCTCTCTAGTTCTTATTTGGCATAATTTTAATGCAGGCAAAATATAAACTAAATGAG CAACAGCTGGCGTCTTTATCGAGTCCAAAGGCTGTGAATGAATATCTTGAGCATCAGAGGGAAAATATAACAAATTTGAT AAAACAGAATCTGGCAGTTGGTGATATATATAGGCGTGAAAATTTGCAGGTATGCATACATGGTTGGAAATCCTTCTACA ATTGATTTTAAAGCCAGAATAAATTATGGGGAGAATCTTCTGTGAGCAGCGTATGGGTTACAAATTGATTCTAAGGAAAT AGAAATTGATCCAAACTTGCTATAAGTAATGTATTCTATAATCTATACACATATTTCCTCCAGTCATACTGACAACAAAT TCTTTCACCTTGTCAAAAGGCAAACCAAGTGCATTATTAAGACTAATCATTTTAATGTGATTGAGAAATACCATTTGCTT GACATACCACTTTCTTTGTCATTAAATTGCCTGGTTTGTTTGGTAAACTCTGACTTATCAGAATGATTTGTGCGTATATG CTTTGTAGCTTGCTACTGAAGACCTTGTCAAAGAGGTTGAAAATTCCATTGCTGAATTCAAACGTCAAAATCAAGAATAT GATGAAGAACGAGTGAAGGGACAGGTTTGCACCTTACTTTTGACTTTGCTAACTTATTTTTTAGTTTTTTATTTTTGCTT CAGCTTTCTCATCATTACATTGTGTGCATATATAAAATTACAAATATCTTCAAGATTGATTGATATGATCTTTTTGAACT TTCCTGAAGGTTCAAGAAATACTAGAAGGAGCTAAGGTCCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTACATTAC CAGATGACAAAATAAACAAATTAGGAAAGTGAAAGTGCCTGTCCATTTGAAGGGAATTTCATTCGGCTGATGTAAGTTGT GAGAAAATAAACTATTTTTCATTGAATTTTGAAGAATATTAAGAAAAAAATTATCAATCCATAGTGTCTATATCTCTGCA TTAACTATTGAAAGCACTAACAAAACAAAAATAGTAGAAAGCCCTAACAAAGAGCTATACTTGTCCTGTTTGTTTTTCCT TTCCATTGTACGTTACTGTTTGAAAGTTAGAAATATAATATAAAATCATTCATCTTGGCCCAACAGCTTAAACTTTTGGT CATGTGGTCTAGAGTTCTAATAAAAAAATCTGAGTTTCACCATAAGGTAGGTGGCTCTGTGCATTATAGTTTAAGCTTTT GGGATAGTTGGTTAATCCTTGAAGGAAAATAACTAAATAAGCAATGCAAGGATCTCTGTACTCGCTACTACATATACCCA GCAGCTAGAAGGGAAAGGCCTTAACAAAATTCTTTACTAATCTCCACCATCTGTTCCAACTTGGTCATCATCTTTAACTA TAACATCAATTAAAGCATGGTTCATAAAATGTACATAGTGAACTTGTCATTACTGGATAAAATTCCTTTCTTGTAATATC TGCCCCAGTTTTGTGTAGAGAGATAGTTGCTCCTCAAAACCAAGGTCCCTTGTTATCTACACAGGAAATAGAAAATTTCA AATGATTGATAACAAAACATTTAACCACTTGTCTGAGTAATGGCCAAAGTGAAACTATCCTTCATATCTATGCAAAATTG GAATTGAAAGAAAACAGAAGGAAACAGAATCCTCTAATTTTGCACATGATTGAAAATTACTCTATGAATTGGTTAAACGA AAGGCTTACCTGGTCCAAAAACATCTCAACAGAGTAGTCTTGGCGGGCAACAAATGATTGATGGTAGATGTAAACAAAAA CAGCCATCACCATCTGAAAAGGATGCATAGCACAGTATAAAACACAACAGTCACAACAACAGCACAAATATATTAGTACA CTTTGCTGTATTACATTTTCATAACAAGTACTTCATTATTTGCGATGAAATTGGAGGATCATGCCATGACTAAGTGTTCA GCATTTAAACAAGGCAGATGTCACAAGGGCTTGGAAATGTCAATAGCTTTGTTTATGTGTTTGCAGCACCAACACAAACG TGATTTCTGAGATCCCAACGCATAAATGGAGAAGAAGGATTTTGTAATTTGTAGAGTTAAGATCAACTTGAATCAGCATT GAATTCAATGAAAGTCCAAATACACACTAATAAATTGCACTCTGACACGTCAAGTTATCAGGACAAAGTTGTTGATGAAG CTTATAATTAAGAAGGTTGAAGTATTTCGGAAGGGATGATTTTTGAGTGTCAAATATAAATTATTGTATCCTGAATTAAA TTGTTGCCTATTCAGATACAACCAAGGATTATTCTAGTTCAAGCTATCTATATGCAAACCTGGCAATCCATTCTGTCAGT AAATCCACCATGTCCAGGTATAGTGTCACCAAAGTCCTGTATTAATTGAAAGAGACTACTGCTAAGTTTGGGAGTTTTAA AATAAACTCTACTATGAATATGAAGAGAAACAACAGACCTTGATTTTAAAGGCTCTTTTGAAGCCACTAGCAAAAAACCC GCCAAATGGTGCTATGATGGAGGCAAATAGTCCCAGCCACAAGGCATGCCACTGTACTGGCAAAACTGCTATCTCTTTCC ATGTAATCTACAAGATGTTTCCAAATGAAAAACTTAGCCTTTAAATTCAGAAGATGACCGGTAATACTGAATCATATGAT TCTAATCATATGATATCAGCAATGATTAATGAAGTGTCAACACACGCTTTCCATATGGTTTTGTTTTGTGTATGAAGACT ACTTAGCTCTCCTTACATAAGTCTTCTTTTTCATGATGAAACAAATCCAATAGTGCAGTGTCTTTGAGCAAGAGAAGGTT AAGTATTTTCATGATGAATACTGTCTGTTAACACCAACTAAAGATGCAAGTAGTTTGCCTTGTATTCATTTGATCTTAAT ACTGTATATTTGTTTCACATTTTGATCATCAAGCTTCCAGAAAGTTAATAGATGTTTACTTACCTTCAAGATCAATATCC AACCAACCTTTGGATACCAGTTGGCATCAGTGCAAACATTAGCACTCTGAGACAAAAAAATTAATGCAACTCTTTTTGGG ATGAGAGTTTGTGCACGTTACACTTGACTGGTATTCAAACACACGCTATATGTCACATTTATACTAGCCTTAAAAAGAAT TTAATCTCAAGAACTCTAACTTACCCAATGAGAAATCCATCCTGGCAATGGAATGTGCTCTGGCTTAAAAATTGGATCAG GGTCACACTGAAGCCAACCAGTTGACAAGTCCTGAATTCATTACACCAAATGATCATCATTAGGAACAGCACAAATATTT CCTCTTACTTGATTGCACTCGATCAAGAATGTTGTACCTTCCTTGGACATATTAGCCACTGGGAACGACCCAAGATCTTT GCAAACTGCACAAATAATGGTGAAATCATAATGAAACAGAAGAACATCATCAAATCAACTATAGGGAAGAGGTTGTCAGA TCCACAAAGATGATCTATTAGTGCTAGTTCCAATAGATAGAAAAGTAACAAAATAAAGTCTGTCTTGAATCTAAAAAGTT TGCATTCAAGTGCATCATGTGTCACTAATTGATACGTACCGTAAATGCAGCAACCATAGTGGCACCAGATGCTCCAATAA AACCTTCCCATGTTTTCTTTGGAGATAGCTTGATAAGAGGTGTTTTCCCAAAGAAGAAACCGAAGAAATATGCAGCAACA TCATTCATAGCAATAAGGGATGCAGGGAAAAGACACCTTCATAATAGTATTAACATGTTAGGTTGCAACAATAAAATATG AAAGAAAG
CDS sequence (LotjaGi1g1v0024000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATGGAGCTGTGTACTCAAACCTTCACCAGGGTTCTCCTTTTCAACAACCCTTCTTCTTTCTCTTCCAGTGCTCT TCTTCTTCGTGCCAACACTTCTACTAGACCCTTCAAATCCAACTCCTTCAAGCTCTCATCTCTTACCCCTCACATTCACC TCTTCCAACCCTTTATCCATCATCACAGTTCTTCTCCCTTTAAAGTTTCAGCTTCTTCTTCAGTTGCAGTTGACGCAGAA AAGGACCGTCTTCCAGCTGATTTGATTGTCACTGAAACAGAGGAATCCAATTCCAGAGTTAGGTTGCATGTGGAGGTGCC ACCATTGGTATGTGAGGATTGTTACAATACAGTCATAGCTGAGTTTACAAAGCAAGCAAAGATCCCTGGATTTCGCCCTG GAAAGAAGGTTCCGGAAAGTATCCTTATTAGCTATGTTGGGAAGAAAAATGTTCAGGGGGCTACAATTGAATCTATATTG AAGAGGACCCTTTCACACGCTATGGAATCGGTTACTGGAAGGGCTTTGCAGGACTCAGTACGTATAGTGACTAAATTCTC TGACATGGAGGAGACATATTCTTCTCTCGGGTTTCTTAGATATGATGTCATTGTTGATGTTGCACCAGAAATCAAATGGA TTTCTGACAATGCATACAAAAATTTGAAGATTGTGGTTGAGCTAGACAGCGATATAGATGCTCATAAAGCATCCGAACAG GTATTTAGAAGGCGCTACAAGTCTACTGGTGCACTGAAAGTTGTCAATGACAGAGGGCTACAGGTTGGTGATGTTGCTGT TGTTGATATCTCAGCAACAACCATTGATCAAGATGAATCCAAAATTGTAAATATTCCTTCTGCTGAAAGTAAAGGATTTA ATCTTGACACAGAAGATGGTGATAGAGTATTACCGGGTTTCATTGATTCGATAATTGGAATTCGTCGAGGTGAAACAAAG TCATTTCCTCTTGTATTTCCTGAAACTTGGAAGCAAGAAAGTCTTCGTGGTGTTCATGCTCAATTTACTGTTGAGTGCAA AGAGCTTTTTTACCGAGATTTGCCGGATCTGGATGATTCTATTGCTGATAAGCTTATCCCTGGATGCACCACAGTGGAGC AGGTGAAAGACTTGTTGCTACAGAAATGCCTAGAAGTGGAGCAAACAGCTAAAGAACAAGCTACTGATAATGCTATCTTA GATCAGATTTCTAAGATGGTAGAAGTTGATATACCTCCATCCTTGTTTGAAGAACAAGGTAGACAGCTTTATGGAGGCAA CCTATTAGAAATGCAGGCAAAATATAAACTAAATGAGCAACAGCTGGCGTCTTTATCGAGTCCAAAGGCTGTGAATGAAT ATCTTGAGCATCAGAGGGAAAATATAACAAATTTGATAAAACAGAATCTGGCAGTTGGTGATATATATAGGCGTGAAAAT TTGCAGCTTGCTACTGAAGACCTTGTCAAAGAGGTTGAAAATTCCATTGCTGAATTCAAACGTCAAAATCAAGAATATGA TGAAGAACGAGTGAAGGGACAGGTTCAAGAAATACTAGAAGGAGCTAAGGTCCTTGAATGGTTGAGAGAACATGCAGAGG TTCAGTACATTACCAGATGA
Protein sequence (LotjaGi1g1v0024000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMELCTQTFTRVLLFNNPSSFSSSALLLRANTSTRPFKSNSFKLSSLTPHIHLFQPFIHHHSSSPFKVSASSSVAVDAE KDRLPADLIVTETEESNSRVRLHVEVPPLVCEDCYNTVIAEFTKQAKIPGFRPGKKVPESILISYVGKKNVQGATIESIL KRTLSHAMESVTGRALQDSVRIVTKFSDMEETYSSLGFLRYDVIVDVAPEIKWISDNAYKNLKIVVELDSDIDAHKASEQ VFRRRYKSTGALKVVNDRGLQVGDVAVVDISATTIDQDESKIVNIPSAESKGFNLDTEDGDRVLPGFIDSIIGIRRGETK SFPLVFPETWKQESLRGVHAQFTVECKELFYRDLPDLDDSIADKLIPGCTTVEQVKDLLLQKCLEVEQTAKEQATDNAIL DQISKMVEVDIPPSLFEEQGRQLYGGNLLEMQAKYKLNEQQLASLSSPKAVNEYLEHQRENITNLIKQNLAVGDIYRREN LQLATEDLVKEVENSIAEFKRQNQEYDEERVKGQVQEILEGAKVLEWLREHAEVQYITR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 25 | 9 | - | – | |
| Phobius | 26 | 539 | 514 | - | – | |
| PANTHER | 69 | 538 | 470 | 2.4E-175 | – | |
| PANTHER | 69 | 538 | 470 | 2.4E-175 | ||
| Hamap | 88 | 535 | 448 | 15.056 | ||
| Gene3D | 90 | 208 | 119 | 1.8E-16 | ||
| SUPERFAMILY | 90 | 226 | 137 | 4.97E-18 | ||
| Pfam | 90 | 227 | 138 | 2.7E-20 | ||
| Gene3D | 243 | 534 | 292 | 3.1E-37 | ||
| Gene3D | 248 | 355 | 108 | 3.1E-37 | – | |
| SUPERFAMILY | 254 | 358 | 105 | 1.14E-8 | – | |
| SUPERFAMILY | 357 | 536 | 180 | 1.12E-18 | ||
| Pfam | 371 | 528 | 158 | 2.1E-16 | ||
| Coils | 489 | 509 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0024000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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