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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0028700 |
| Transcript ID | LotjaGi1g1v0028700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin protein; TAIR: AT1G28490.2 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3441318..3444243) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTTTGATGTCTGAATTGTTTTTTTTTTATGTGGTAAGATTGATAAGTTGCAAACTACTTTTCACCAATGGGAAAACA CTTCTGATGCTGGTGAGCGAGAGCGTCTTTCAAAGGAAGTTCTCGCTGGTTGTGAAAGTACTGAATGGCAGGTATGTATG CCCATTGCATTTGCAGAACCGGCCACAACTTGGCCTATAAGTTTTGTTTTGAATGATTTTTATTTATTCTTCCAACATGG TAGTACAGGGAGTATCCTTCCTCAGGGGAAATTTTCTGTGGAAAGAAATAAAATGAGGTATTTGCATTTAACAATCATCC TGATGTAAGCTCAAAAACCTCTTGATAGGAATAAGCACTTAGGAAGAAAGGAAGACAAAGCTGTTAGATATTTGAGAGAT CGAGGTCTCTCCCAAGTACAAATGATCCTAAGATAAAGTCTCTTGGCATCTCCATGCAATTTAAAATATTTCCACTCTCG CTCTCTAACTAACTAACTAACTAACTAACTACGGTTACCTATAATTTTGTAACCTATCAGGTGGAGTCATAACATAGAAA TGGGCAACCATAATTGGGAAAAGAAAATTAGTCAGTGCCACATAAAATTATTGCGGATATGAATGACATGTTTTTGTACC ATCTGTTGTTCTCATTGTTTTAAACATCCAACCCTTCTGCCCTCCCCCCTTTCCCTGGGGACACGATTTCTTCCGTTCCC TTTCGGTGTGCTAGGAAAAGTCAAAAGAAAGAAAAGGGGTGAAAATGGAGTTAAATGGAAATGTTTTGAGTCTTTTTTTT TTACTCTGTCTTTGGTGTTTTTTTTTTTCACCTTTTAGAGAGTGGTAAACAGATAGAAAGTCACTTCAAACTCCATAAGC ACACCCTTGTCTATTATGAATCTTCTGCCTTACTTCACCCATCTTAACCTATGTTAGTTTTTGGTTTAGATGCTCTCTTT TTTCCATGTGGTTTTTTCTTCACTTATTCAAACTGCTGAAATGTGTTATTTTTTTGATAGAAAGGTGGATGAATTGGACA AAGCAATTTCTGTAGCATCAAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAATCGGAGGAGGTGGACC ACCAATGCTCGCACCCAGGTATCAATAACTTATGCCAAAATTTAGTAAGACTGAGGAAAAGAGAGTCAATTTTTCTCAAC TTGTTCATTCAGTATTATTTTTTATTAGTTGCTCTTGTCTTTTGTTATTACTTATATATTATATATTTTTCATCTCCATG GTATTAGGTGCGCACAACAAAGAAAGCGGTGGAAGCTGGAAAGGGCTCAAATACAAGTATAAATGGGATGCGCAAGGAAT TGATGAGGCTTCCTGATTCTCATCAAACTACGTCCAACCAATATGCTGCACAAGATAGTGATGATTTCATAGACTCGGAA TCAGATAGGCAGATGCTTCTTATAAAGTATACTTATTTGTCCCTTTCTTTCTGTCTCTTACATGTTGTCTTATGCCCTAC TTCTAATTGGCTCTATGCACTTCTTCATGCAATTGAACTCTAATGATGGTCACTATCCTAGTGCTGCTCTACTACTTGTA AATTTCTGTTTTCTTAAATGATTTTGTTTCTTGTTATCATCCTTGCTAATTATTGTAGTGTTGTTTGGACCTCCTGTCAC AACTAAATAAGAAAGCAAAGCAGAACTAATATGATGGTTTCCCTTTTTATTTCATTTGGAAGAGAAATAAAGGAAAAAAT AAAAAAGACGGTGGCAGGTAACCTTAACTTGACTATAGGCATGAAATAAAGTGACAAAGTGTTTATGGATCCTTCTGGGA AGGCCTGTCCTCACTGGTTGCTATTTTATATCTTTTAATTTATACCATATCTGTTGTTGCTGTTAGGAAACAGGATGAGG AGTTGGATGAGCTTACGTTAAGTGTACAGAGAATTGGAGGTGTTGGACTCACGATACACGATGAGCTCGTTGCGCAGGTA GATCTGAGAGTTTCTTTGTTCTGTGATGCTTGATATTTTTCTTTGAAAAGTAGGATAGATAATATATGTGTAGTTAATAG TTATGTGTTTCCTTCAAGTGTCTTTAATAGAAGCTGTGTTTTCATTCCTGTTTTGTGTCTACAAGAAATTCCTCTTTCTA AACATTTTAAATTCTTGATGCTTCAGGAAAGGATTATAGATGAACTGGGTAATGAGATGGACAGCACAACTAATCGTCTA GATTTTGTCCAAGTGAGTTTCTGATCCTAGTTCTCATTCTCTCCTCAAAGTGTTTATGATCTATCTGACATTCTGACTTG AGATTCTGTCACTAATTGGTATTAATAGCATGCTTGAATAAATGTATGTTTGGTTTCCCACTCACAATCAATTTTCACCA AGTAATATCACTCTTGGATGACAATTAAGTGTTTGAGAGACATCTTGGAGAATTGATGTCAGACCCAAAATCAATTCCAT TAATAGAGTAGTTTTGTGTTGAACATAATCAATTGAGATTTCATAATTGGATTTTACAAACTACCCTGCAAAAATCATTT TTTTCATAAATGTATCTAAACACAAATCACTTTTACTATAATCAATTTTATCAAAATCACTTTCAGCCAAAACCAATTGT GACAACACTGATGTAAATTATGGCACTCAGAAGCTACTCACATAAGCTTCCCTTAGAATTGATTTTGGCTTTAGAATCAA ATGTGAAGAATCTCCAAACATCACACGCTCAAAGGGAAAAACTTTGAATGTTGATACGTGTAAATTGATGCATGTCTCTT TGTTCATGATTTCAGAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGTCAGTTCTTGATGATATTGGGTTT GCTGGCTCTGTTCATTTTCCTCTTCATCTTGGTATTTTTCACCTAG
CDS sequence (LotjaGi1g1v0028700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAATTGTTTTTTTTTTATGTGGTAAGATTGATAAGTTGCAAACTACTTTTCACCAATGGGAAAACACTTCTGAT GCTGGTGAGCGAGAGCGTCTTTCAAAGGAAGTTCTCGCTGGTTGTGAAAGTACTGAATGGCAGAAAGGTGGATGAATTGG ACAAAGCAATTTCTGTAGCATCAAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAATCGGAGGAGGTGG ACCACCAATGCTCGCACCCAGGTGCGCACAACAAAGAAAGCGGTGGAAGCTGGAAAGGGCTCAAATACAAGTATAAATGG GATGCGCAAGGAATTGATGAGGCTTCCTGATTCTCATCAAACTACGTCCAACCAATATGCTGCACAAGATAGTGATGATT TCATAGACTCGGAATCAGATAGGCAGATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTTACGTTAAGTGTA CAGAGAATTGGAGGTGTTGGACTCACGATACACGATGAGCTCGTTGCGCAGGAAAGGATTATAGATGAACTGGGTAATGA GATGGACAGCACAACTAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGTC AGTTCTTGATGATATTGGGTTTGCTGGCTCTGTTCATTTTCCTCTTCATCTTGGTATTTTTCACCTAG
Protein sequence (LotjaGi1g1v0028700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELFFFYVVRLISCKLLFTNGKTLLMLVSESVFQRKFSLVVKVLNGRKVDELDKAISVASRDPSWYGIDEVEIENRRRW TTNARTQVRTTKKAVEAGKGSNTSINGMRKELMRLPDSHQTTSNQYAAQDSDDFIDSESDRQMLLIKKQDEELDELTLSV QRIGGVGLTIHDELVAQERIIDELGNEMDSTTNRLDFVQKKVAMVMKKASAKGQFLMILGLLALFIFLFILVFFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 29 | 24 | - | – | |
| Phobius | 30 | 214 | 185 | - | – | |
| Gene3D | 46 | 98 | 53 | 9.2E-8 | – | |
| PANTHER | 49 | 229 | 181 | 2.3E-84 | – | |
| PANTHER | 49 | 229 | 181 | 2.3E-84 | – | |
| SUPERFAMILY | 49 | 94 | 46 | 1.02E-8 | ||
| SMART | 138 | 205 | 68 | 1.1E-6 | ||
| SUPERFAMILY | 141 | 205 | 65 | 9.59E-13 | – | |
| ProSiteProfiles | 143 | 205 | 63 | 12.049 | ||
| CDD | 146 | 203 | 58 | 7.39681E-16 | – | |
| Gene3D | 150 | 214 | 65 | 2.2E-17 | – | |
| Coils | 174 | 201 | 28 | - | – | |
| Pfam | 180 | 231 | 52 | 1.1E-7 | ||
| TMHMM | 215 | 234 | 20 | - | – | |
| Phobius | 215 | 234 | 20 | - | – | |
| Phobius | 235 | 235 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0028700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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