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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0029700 |
| Transcript ID | LotjaGi1g1v0029700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide methionine sulfoxide reductase MsrA; TAIR: AT5G61640.2 peptidemethionine sulfoxide reductase 1; Swiss-Prot: sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase; TrEMBL-Plants: tr|I1M6R8|I1M6R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0029700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3625954..3627452) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTCTCAAACTCTTAGCAGCAACCTGCAGCAGCTATAGCACCACATCCAGCTCCTTTCTTGTGTACATTTCTTCTTC CCTTTCCTGTCCTTCCAAAACCAAGTTCCTGCCCTCGCTTTCCAAATTTTCTGTCAAGCGTTCTTGCTTCTTTTCCGAAA CTCGTCCCCGTCTTGCTGGGAGCAAGCCCTCTATGAACCTGTTGAACAGACTTGGATTTGGTAGCACAAGGTCACCGGAG AACATGGATTCATCCATTGCTCAGGGACCAGATGATGACATACCGGCACCAGGCCAGCAGTTTGCGCAGTTCGGTGCTGG CTGCTTTTGGGGCGTTGAGTTGGCCTTCCAGAGGGTGCCTGGGGTGACCAAGACTGAAGTTGGTTACTCACAGGGGATTT TGCATAACCCAAGCTATGAGGATGTGTCTTCAGGGACCACTAACCACGCAGAGATTGTAAGAGTCCAATATGATCCCAAA GCATGTGGCTACGAGTCTCTACTTGATGTGTTCTGGGCTAGACATGATCCTACCACACTGAATAGACAGGTATGTAGAGT TTTTGGTTTGAATTATGAACCTTATGGTGTTAAATTGAGTAGTCTGGTTTCTGATTGATATCTGGTTCTTTTGTTGTCTG AAATAGTGAAATGGCATAAAATTGTTTTGGATCATGTGTCTTCTCGTCCTACACAGTACACACCATTACTCCATACATCA GTTGCATTTAAGTGCTCAATTGCAAATGCTAATTTTTGCTTTGTTTTCATTGTGGTAATGAAGTTTCAGCTTATTTTTTC CCTTTTTTTTTTTGGTTAGTTCCCACTATGGTCTTCCTTCTAAATAAAATTCAGTTTTTCACTTATTTTTTCATTTATCT AGAAAACTATTTTGACATGGAATAATCTATTTTCTTTAATTACATTTTTGGTCCTGTCCCTTTTTTTCCCTCACCTTTCA CTATGCACACCTTTTGCTTTTGTAGTTCTCTGATCTCTTTTTCATTCAAATCCATGCATGCATGAACCTTTAAATACATG ATGACAAGTTGTGATATCTGCTCATGATTTGTGCATCATCATGTGACTTGGTGCATGTTTAGAAACCCTTCTACAAATGA TTCTAAAACCAAATTAAATTAATTCTGGTGAGTAGTTTCTGGGTTTCAGAATTGATTCTGAAGAAAGAAAATCTAATCCA AACATGGTATAAGCACTTAGTGAGAATTTGATCTTCCTTTGTGACAGGGGAATGATGTGGGAACACATTACAGATCTGGA ATATACTTCTACACTCCTGAACAAGAGAAAGCAGCTCAGGAGTCTTTGGAACAACATCAGAAGCAGTTGAACAGGAAGAT TGTTTCTGAGATCCATCCTGCCAAGAAGTTCTACAGGGCAGAGGAGTACCATCAACAGTACCTCGCGAAAGGAGGTAGAT TTGGTTTCAAACAATCTACTTCTAAAGGATGCAATGATCCAATTCGGTGCTATGGTTAA
CDS sequence (LotjaGi1g1v0029700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCAAACTCTTAGCAGCAACCTGCAGCAGCTATAGCACCACATCCAGCTCCTTTCTTGTGTACATTTCTTCTTC CCTTTCCTGTCCTTCCAAAACCAAGTTCCTGCCCTCGCTTTCCAAATTTTCTGTCAAGCGTTCTTGCTTCTTTTCCGAAA CTCGTCCCCGTCTTGCTGGGAGCAAGCCCTCTATGAACCTGTTGAACAGACTTGGATTTGGTAGCACAAGGTCACCGGAG AACATGGATTCATCCATTGCTCAGGGACCAGATGATGACATACCGGCACCAGGCCAGCAGTTTGCGCAGTTCGGTGCTGG CTGCTTTTGGGGCGTTGAGTTGGCCTTCCAGAGGGTGCCTGGGGTGACCAAGACTGAAGTTGGTTACTCACAGGGGATTT TGCATAACCCAAGCTATGAGGATGTGTCTTCAGGGACCACTAACCACGCAGAGATTGTAAGAGTCCAATATGATCCCAAA GCATGTGGCTACGAGTCTCTACTTGATGTGTTCTGGGCTAGACATGATCCTACCACACTGAATAGACAGGGGAATGATGT GGGAACACATTACAGATCTGGAATATACTTCTACACTCCTGAACAAGAGAAAGCAGCTCAGGAGTCTTTGGAACAACATC AGAAGCAGTTGAACAGGAAGATTGTTTCTGAGATCCATCCTGCCAAGAAGTTCTACAGGGCAGAGGAGTACCATCAACAG TACCTCGCGAAAGGAGGTAGATTTGGTTTCAAACAATCTACTTCTAAAGGATGCAATGATCCAATTCGGTGCTATGGTTA A
Protein sequence (LotjaGi1g1v0029700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLKLLAATCSSYSTTSSSFLVYISSSLSCPSKTKFLPSLSKFSVKRSCFFSETRPRLAGSKPSMNLLNRLGFGSTRSPE NMDSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQYDPK ACGYESLLDVFWARHDPTTLNRQGNDVGTHYRSGIYFYTPEQEKAAQESLEQHQKQLNRKIVSEIHPAKKFYRAEEYHQQ YLAKGGRFGFKQSTSKGCNDPIRCYG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 30 | 30 | 5.0 | – | |
| Phobius | 5 | 12 | 8 | - | – | |
| Phobius | 13 | 19 | 7 | - | – | |
| Phobius | 20 | 266 | 247 | - | – | |
| PANTHER | 64 | 266 | 203 | 9.6E-120 | – | |
| PANTHER | 64 | 266 | 203 | 9.6E-120 | – | |
| Gene3D | 84 | 266 | 183 | 2.3E-79 | ||
| SUPERFAMILY | 94 | 256 | 163 | 3.14E-68 | ||
| Hamap | 99 | 256 | 158 | 34.56 | ||
| TIGRFAM | 102 | 244 | 143 | 1.1E-59 | ||
| Pfam | 103 | 244 | 142 | 2.3E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptide-methionine (S)-S-oxide reductase activity | Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0029700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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