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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033200 |
| Transcript ID | LotjaGi1g1v0033200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K3J1|G7K3J1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0033200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4268523..4274075) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTGCAGTTAGTTCCCACCTACATCATCTATTATTTTCTATCTGTGCAAGTTTGGTTCAAAGCTTTTGACATTCAGGT CCGTCTCACAAAGAGAAGAGGACTATCCGTCGTTTAGTTTGACCCTGCAACATTAATTTTTCAGTGAGTTAAAATTCCAT TCACTTCACTGCTTTTCTAAATCAAATATCTATGCCATCCTTTTTTATTGTCACTGCTACTGGATCGGATCTGTGAATTA ATGAAGACATAGTTGCATTTTCCTTTTCAATTTAAATTTACGTTTTTACCTGCCTCACCTTATATTGATTAGCTAGTAGT TATTAAAGTGATTATGTATGTATGTATGTATTTTCCAGGTTAGGAGGAAAACTGTTGTGTTGGCAGTGGAAAAATGTTAA TGTTTTTTGTTGGCAGAATCACTAATGAAATCGACAGTGAAATGGAGAAACTGATTTCAAATCGAGATCTCGTGCTTGAA AAATTTGAAGCAACTAGTAAAACAGGAGGAGGAGCAGTTAATTATGTTGTCAGGTGGCTCAGTGATGCGGAGGAACACAT GATTAAGGTGGAGGGGATGTTAAGAAGAGAAGAAATGATATCAGTTTTAGGAATTCCTATCTATTATTGTTTGCCGAGGT TTTTGTTTAATGAGCAGAACACGTATAGGTTCTTTTGTGGAATTCTAGAGAGAATCAAGACGCTGAATGCCAAATGTGAA ATTGAGCTGTTTTTCAACTCAGTTCCTGATTCAGACTACTCTTCACCTCCATATAATTTTGTATGTTTTGAGTCTCAAAA AGTGGCCTCAGATCAAATTTTGGAGACACTAAAATATTCTACAACCCGTGTTATTGGATTACATGGGAACCGAGGCTCAG GTAAGACACAATTGGTGAAAGCTGTGGCCGCGAAAGCCAAGTATTTAAAGATTTTTCGTAAAGTTGTATTTGCCACTGTG TCCCAAAATCCAAATGTTCAGAGGATTCAGAATGAAATTTCTCTCTCATGCTTTGGTTATGATTGCTACGGGGATAAAAA TGAAGAAGAAAGGGCAAAATATTTGTCTGGCAGGTTAAGTTACGGCCCAACTCTTATAATCTTGGATGATGTTCCGGAAA AGTTTGACTACCAGTCTATAGGTTTTCCTACTACCGGTGAGAGTAAGATCCTTTTCACTACATGGAGCCAACGAGAATTT ATCTGGGTGAATCATGAAAGGAAGATTCCTCTGCATCCCATTTCTGAAGAGGAAGGTTGGATGTTTTTCAAAAAACATTC AGGCATAAATGAGGAGGAGTCCCCATCTGACTTACTAAACGTGGCACGAGAAGTTTTTTCTGAATGTGAAGGGTTGCCTG GTAAAATTATAAAGGTGGGATCTTCCTTGAAAAGTCAACCCATTCAAGAGTGGAAAGCATCCTTATATAGTTTGAGACAT TCAACGGCCCGCTACCATATTTTCCTCAGTTTTAGAGGAGAGGATACGCGTCATTCTTTTACGGGTTTTCTCTATCGTGC CTTGTGTCGGGAGGGATTTAAGACCTTCATGGATGATGGGATAGAGGGGCTACATGGTGGGGACCTAATTTCACCTGCTC TTATTGAAGCAATAGAAGCATCAAGGCTTTCAATTGTTGTTTTATCTGAAAATTATGCACATTCCTCTTGGTGTCTTAGT GAACTGGTCAAGATTCTAGAGTGTATGAAAGTGAAGAATCAACTTGTTTTGCCAATCTTTTACAAGGTTGAGCCATCAGA TGTAAGGTATCAAAATAACAGTTATGGCAATGCCATGGCTAAGCATGAAAAAAGATTTGGAACTGATCCTGAGGAGGTAC AAAAGTGGAAGTCAGCTTTGTTTGAAGTTTCCAACTTACCTGGGAAGACTTACAAAACTGGGTATGTAGTTTACTTTGAA ATGCTTTTTAGTTAAACTCCATAGCTAAGATCTAGTCTGATATATGCTGCCTGTAGTTTATTATGTCATTAACTAACTTG TTTTGAAGGTCTATGAAATGTTAAAAAGGAAATCTAATCTTCTAAGTATCATTTCAAATGTGATTTTGTGAACAATGAAT GTCTTCAAATATGCGATACTAGTCTAGATTTATTTAATGTAACAGTGACATTATGCTTTTGTGAAGATTTATTAACTAGT AAACTAGGCAACTTATTCTTATATGTCTCATGTGAAAAATACAGTAATAGAACCAAAATGAAAATTATATGCATAAATGA ATTGACAAGCCATGTACTTTTGCAGGTATGAATATGAATATATCAAGAAGACTGTGGATGATGTCAATAGTATTAAAAGG GGCTTGCATTTACAGAGCATGGATACAGACGAGAAGGAAGTCTTCAGTTTCTCTTACAATAAGTACTTTCTCTTACAATA AGAACTGCACCAAACAAAACACATTCCATACTATTATTAGCTCTAGAATTGTTTAGTGTTGAGATGTGCATATTCAGTTG CTGGAAGTTGTTTTGGAAGAGTGGGCGTTTTTACTTTTGTACTTTAATCTAAATGCAAATTACCAATTCTGTGCAAGTTT CAAAAACTTTTACTAATACATTTGCAAGTGAACTGAATTGTCATTTTGATCTCAGGAAGATTTGGAATCACCCCGACTAT AGAAAATTAGAAATAGGTGAACGTCTCTTACTAATGTCAGTCACATTAGTCTCTCTATTCCCTACCGATACCATTGGTTA GTTAATTAACTTGCTTATGTGATTGTTAACTAACTTGCTTATGTGATTGTTAACTGCGTAGTATGCATCTTGGATGACAT TGTTAAGGGTCCAGCTCCTCTAAAGTGAGAGATTTACTTTAGAAGGTAAAGTAAGTCATCACAACCATTGACTGAATTGT TTAAGAGTTTTATAAATTCAAGCAGATTCACAATATAAGCACAAAAGAACGAATAAGTCTGATATGAAAAGTGCATATGT GGAGGTTTTTTTTTTTGGAAGGCTGCTGAACAGTTACTGTGAATCAATGAGAAAATCAAGAACACTGAGGAAGAAGATGA ACTCTGTAGAATCTGTGTATTGAAACTGAGAAGAAGAACAGTTACAAGATAGAAAACGGTTACAGAGATGCCAACTGAAT TGCCCTATAACCAATCAATACTCTATAACTGCCTAACTAGTGAAGACTAAGCTTCACTTATTTATACTAGGAATTACAGC TGGCACACTAGGAATTACATCCGGCACACTCTAGCAAAACATAATTAACTATCAAGAGCTAAGTAGCTCGGTTCCTTCTC TCATAAACTTTCCTAACAAGAGGCCTAACTTGACTAGCAATCCTATCAATACTCCCCCCTAACAGAACCACTTTGTCCTC AAGGGGAAAAGAAGGAAAAACCTCCAACATCTTTGAAGCGCGCTCCCAAGAATTGTTGTTGGATGGAAAATCAACCCATT TCACCAAAACTTCCATGTCGCCTCCAACATCAGTCCTCCACTGCAGAATATCCTTTGGTTGGACAACCAATTCTAACTCC TCAGTCAGCATAGGAGGCAAGGTCTGAGGGGAAAGCTGAGGAGTCACAACCTTCTTAAGCAAAGAAACGTTAAACGCCGG GTGAACCTTAGATTCAAGAGGCAGATCCAACTTGTAAGCCACCTCCCCAACTCAACTCAAAATCTGATAAGGGCCATAAT ACTTAGGAGCCAATTTAGCATATGGTCTATCAGCCAGAGACTTCAGCTTATAAGGCTGAAGTTTCAAGAAAACTCATTCC CCCATTTAAAATAGCACCAACCGTCTGTGCTTATTTGCTTGTACCCGCATCTGATCTTTAGCTTTCAAAAGATTCTGTCT CAGGTTAGCAAGTAAAGCATCACTTTGTTCGGTCAATTGGTTGACATCTTCCAGCTTGGATGGAATAGTGCATCCCTTAA TCAACAAGGGTGGATCTCTACCATATAAGGCTTTAAAAGGAGTCATACCCGCAGACACATTATAATTGCTATTAAATCAA AACTTAGCCCAATGCAACCAATAACCATGTCTTAGGTTTAGGGCCAACGAAACAGTGAAGATAGGTCTCCAAGCACCTAT TGGTCACTTCGGGTTTACCATCTGTTTGAGGATGATAAGTTGTGCTATGCTGTAATTTAGTGCCAGCCAATTGATAAGTG CTCATTTTACGTATGTTTGGATATCATTTTAAGCACTTATTTGACTTGTATGCTTGCATTTTTTATCATTATACTCCCCA AACAAGTTAACTTAGTACGTATTTAGCTTTAACATAAATATAGTGAAAATATCATTAATTTCATGTTCTAACTTGGAGTT TTGATGTAGGGAAGAAATTCAAGGAAGAGCCAAGTTGGAATTAAGAAAATGAAGATTTGAAGGCTTGATGCTTAGCGCCA TTCTGGCAAAAAGACCATGGCGCTTAGCGCCAGAAAGTGGCGCTTAGCACCAAAGGCGGTGGAGAAAACCCAAGGGGGAG GTAACAGGGGTGCTTAGCACCAGAAAATGGCGCTTAGCACCATTCTGACTAATTCAACTTTTATTTAAGGGCCAGAACAC GTTTTTGTGGGTATCTCTCCTATTCTCTTCGAAATTCTCTCAATTTTGGCACCATAACAGAGCAAGGGAGCTGGGCTTCA TGGAGGAGGGGTCCTTGGGCTAGGATTGGAGCTTCAAGATAGTGATGGCAGCCATGGGTGGACGGGGACAACCTCCCGAA AGCCATGGAAAGCTTGGGAAAGCTTCCATGGTCGTGGTTACGTCGTCTTCTCTTGGGTTTCGGTTCTTTCTTCCCTTTCT CTTGTAGTTTTTGTTTCTATTTTTGTATTCAGGATGTTATAACTTGATGCTTTGATTGTTGTAAGCTCTTTCATCAATGT AAATGATAATCTTTCATGTATTGTGTTTCTCTTTGCACTTCATGCTTCTAACCAATCAATTGATAATCAAAAGAGCTTCA CTAATTCATAGATAGATCGGGAGATTATTGTGAGTTTGTGTATGCCTAGTTCAATGAAAGTGGACACCTATGTCTTAGGT TTTCGCTTTCTGTGCTTCAAGTATCGATTGATCCATGTAAGATTTCAGGGGACTAGCATTAGATCGAGAGATTGGTGTGG GTCCGGTCAAAGAGAGAAACTGCTTAGTGCATCAATTTTCTTAGGGTGAGAATATCTTGGGTAGGAACAATAGTGAATTT CTACGTGACAGGTGGAGTTCTGAGTTCTAACAGGAGTTTCCGGAGTGACAACGGAGACTTGCAAGCCTAGGGTACCTTGT CTTAGGATGAACTGGCCATTGGGAATGTCTTTGAGAGAGAACTTGAGCTATATTATTCCTTTTGGGTTTTCTAGATGGTA AGGGATTACGTCTAGGAATTTTAATTGATAGATTCACCTAGGCTAGGGATAGTTAGGTGGATAACTCTCGGCATCATAAA TGAAATGAACCATTACAAAAGTGTTTGAGTTGAAAGCAATTAGAGGAATAGGTGAAAATGCATTTTAAATATGTTTTCTT CTTTGTTACCTCAGTAAATATTCTTTTACTGTT
CDS sequence (LotjaGi1g1v0033200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAATGTTTTTTGTTGGCAGAATCACTAATGAAATCGACAGTGAAATGGAGAAACTGATTTCAAATCGAGATCTCGT GCTTGAAAAATTTGAAGCAACTAGTAAAACAGGAGGAGGAGCAGTTAATTATGTTGTCAGGTGGCTCAGTGATGCGGAGG AACACATGATTAAGGTGGAGGGGATGTTAAGAAGAGAAGAAATGATATCAGTTTTAGGAATTCCTATCTATTATTGTTTG CCGAGGTTTTTGTTTAATGAGCAGAACACGTATAGGTTCTTTTGTGGAATTCTAGAGAGAATCAAGACGCTGAATGCCAA ATGTGAAATTGAGCTGTTTTTCAACTCAGTTCCTGATTCAGACTACTCTTCACCTCCATATAATTTTGTATGTTTTGAGT CTCAAAAAGTGGCCTCAGATCAAATTTTGGAGACACTAAAATATTCTACAACCCGTGTTATTGGATTACATGGGAACCGA GGCTCAGGTAAGACACAATTGGTGAAAGCTGTGGCCGCGAAAGCCAAGTATTTAAAGATTTTTCGTAAAGTTGTATTTGC CACTGTGTCCCAAAATCCAAATGTTCAGAGGATTCAGAATGAAATTTCTCTCTCATGCTTTGGTTATGATTGCTACGGGG ATAAAAATGAAGAAGAAAGGGCAAAATATTTGTCTGGCAGGTTAAGTTACGGCCCAACTCTTATAATCTTGGATGATGTT CCGGAAAAGTTTGACTACCAGTCTATAGGTTTTCCTACTACCGGTGAGAGTAAGATCCTTTTCACTACATGGAGCCAACG AGAATTTATCTGGGTGAATCATGAAAGGAAGATTCCTCTGCATCCCATTTCTGAAGAGGAAGGTTGGATGTTTTTCAAAA AACATTCAGGCATAAATGAGGAGGAGTCCCCATCTGACTTACTAAACGTGGCACGAGAAGTTTTTTCTGAATGTGAAGGG TTGCCTGGTAAAATTATAAAGGTGGGATCTTCCTTGAAAAGTCAACCCATTCAAGAGTGGAAAGCATCCTTATATAGTTT GAGACATTCAACGGCCCGCTACCATATTTTCCTCAGTTTTAGAGGAGAGGATACGCGTCATTCTTTTACGGGTTTTCTCT ATCGTGCCTTGTGTCGGGAGGGATTTAAGACCTTCATGGATGATGGGATAGAGGGGCTACATGGTGGGGACCTAATTTCA CCTGCTCTTATTGAAGCAATAGAAGCATCAAGGCTTTCAATTGTTGTTTTATCTGAAAATTATGCACATTCCTCTTGGTG TCTTAGTGAACTGGTCAAGATTCTAGAGTGTATGAAAGTGAAGAATCAACTTGTTTTGCCAATCTTTTACAAGGTTGAGC CATCAGATGTAAGGTATCAAAATAACAGTTATGGCAATGCCATGGCTAAGCATGAAAAAAGATTTGGAACTGATCCTGAG GAGGTACAAAAGTGGAAGTCAGCTTTGTTTGAAGTTTCCAACTTACCTGGGAAGACTTACAAAACTGGGTATGAATATGA ATATATCAAGAAGACTGTGGATGATGTCAATAGTATTAAAAGGGGCTTGCATTTACAGAGCATGGATACAGACGAGAAGG AAGTCTTCAGTTTCTCTTACAATAAGTACTTTCTCTTACAATAA
Protein sequence (LotjaGi1g1v0033200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMFFVGRITNEIDSEMEKLISNRDLVLEKFEATSKTGGGAVNYVVRWLSDAEEHMIKVEGMLRREEMISVLGIPIYYCL PRFLFNEQNTYRFFCGILERIKTLNAKCEIELFFNSVPDSDYSSPPYNFVCFESQKVASDQILETLKYSTTRVIGLHGNR GSGKTQLVKAVAAKAKYLKIFRKVVFATVSQNPNVQRIQNEISLSCFGYDCYGDKNEEERAKYLSGRLSYGPTLIILDDV PEKFDYQSIGFPTTGESKILFTTWSQREFIWVNHERKIPLHPISEEEGWMFFKKHSGINEEESPSDLLNVAREVFSECEG LPGKIIKVGSSLKSQPIQEWKASLYSLRHSTARYHIFLSFRGEDTRHSFTGFLYRALCREGFKTFMDDGIEGLHGGDLIS PALIEAIEASRLSIVVLSENYAHSSWCLSELVKILECMKVKNQLVLPIFYKVEPSDVRYQNNSYGNAMAKHEKRFGTDPE EVQKWKSALFEVSNLPGKTYKTGYEYEYIKKTVDDVNSIKRGLHLQSMDTDEKEVFSFSYNKYFLLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 114 | 273 | 160 | 8.5E-18 | – | |
| SUPERFAMILY | 122 | 349 | 228 | 1.93E-34 | ||
| Pfam | 140 | 352 | 213 | 2.5E-24 | ||
| PRINTS | 153 | 168 | 16 | 4.5E-7 | – | |
| PRINTS | 227 | 241 | 15 | 4.5E-7 | – | |
| PRINTS | 318 | 332 | 15 | 4.5E-7 | – | |
| SUPERFAMILY | 346 | 497 | 152 | 8.76E-39 | ||
| Gene3D | 348 | 523 | 176 | 1.6E-60 | ||
| PANTHER | 348 | 515 | 168 | 5.9E-76 | – | |
| PANTHER | 348 | 515 | 168 | 5.9E-76 | – | |
| ProSiteProfiles | 352 | 495 | 144 | 29.772 | ||
| SMART | 353 | 495 | 143 | 3.8E-43 | ||
| Pfam | 354 | 521 | 168 | 1.1E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0033200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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