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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033300 |
| Transcript ID | LotjaGi1g1v0033300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4341975..4344907) extracted from Lotus japonicus Gifu genome v1.2.
CGTTGATTTGTCTTCTAGCAAATTTTTGTAAGTTTCACTTCATTATACACATTGGATCTACTGTAGCCTATTTTATTTAA GTTATATCCTTCTCAGGTTATGATCATTTTCATGAATTCATTCACCTTGTCTAGATTTTTTGCATAGAAGTAGGCCATTA ACATGTGTCTGGATTAAGTGTTAGATGGATTATATTTTCCAGGTGAGTTTAAATGGCAGACCAAGACTCTATCACTGTCA CCACACTTGCTGGCTTGATAAGGTCATTTATTTGTGAAGGAATATTTCGGTTTTGTGCTAGAAATATCATTAGAGAAATA AACAATAAGAACAAGGATCTGATTTCACGTCGAGATTATTTTCTGGGAAAAGTTGAAGAAATAGGGGAAACAACAAACGC CGTTTTGAAGTGGCTAAATGATGTGGAGAAAGCCTTGGATGAGGTAGAGATGCTGGAAAAGAAAATGGAAACCGAGTCTC GTCTACTTGGGATATATGGTGTGGATCATGAGACATACTGGCGGTACAACGAAATGGTAGACATAATAGGGGGCCTGAAT TACAACTTTCCAATGGTAGGCCCAATTCCACATTTACAGGAATGTGCTTCTGAATATTTTGTGACTTTCAAGTCTACAGA AGAGGCTTCAGAACAACTTTGGAAGGCACTGCATGATGACAGTAGCTATGTGATTGGATTGTATGGGAGGCGGAACTCCG GTAAAACAACATTGGCTAAAGCAGTGGGCGAGAGGAGCAAGTATGTAAAGACTTTTAGCAAAGTTGCATTTGCCACTGTC TCCAAAAATGTAAATGTAAGCAGGATTCAAGATGATATTGCTGCCTCCTTGGGTTTGACGTTTTCTGATATTACCAAAGA AGGAAGAGCCGGAACAATATCTTCTGAATTGACCAAAGAGAGTGGTTCAGCTCTTGTAATATTGGATGATGTTCGGGCCA AGGTTGAACTAGAGGATATAGGTATTCCTCTTGATCATGGTAATTGCAAGGTCCTTTTAACCACACATAGCCAACTAGAA TGTGCGTTGATGGATTGTCAGCTGGAGATTCCTCTACATCCCTTATCTAAAGAAGAAGCTTGGATGTTGCTCAAATATCA TTCAGGAATAAATGAAGACTCTTCATATGACTTATTAAACCTGGCACAGGAAGTTGCTTTTGAATGTGAAGGGTTACCTG GTATAATTAAAAAGGTGGGATCTTCCTTGAAAAATGATCCGATTGAAGTGTGGAAAGCATCATTAGAAAAACTCAAACAT TCAAAGGCCTACAACCAGATTTTTCTGAGTTTTAAAGGAGGAGATACTTGCTTCTCTTTTACTGGTTTTCTCTATCATGA TTTGTGTGAAAAGGGATTGAAGACCTTCATGGATGATGGAGAATTGTATGGTGAGGAACAAATTTCACCATCTATTATTA AAGCTATTGAAGCATCATGGCTTTCAATTATTGTTTTATCTGAAAATTATGCAAACTCTGCTCGATGTCTTGATGAACTT GTCAAGATTCTTGAGTGTAAAAAGATGAAGAACCAATTAGTTTGGCCAATTTTTTATAAAGTGGAGCCCTCAGATATAAG GTATCAACAAAGTAGTTATGGCACAGCCATGGCTGAACACGCAAAGAGTTTTGGAAATGACTCTGAGAAGATACAAAAAT GGAAATCAGCTCTTTTTGAAGTTTCCAACTTGTCTGGAAAGGCTTACAAAACAGGGTACTATACTTTCAAATATTTAATT TAGTTTCGTAATTTACATCTCTTATCTATGCTAGTACTAGCGGCTAATAATATGATTAATCACCTTGTTATTTTAAGGTA TATGAATCATGGTTATTAGTATCATAAATTACGTACGTATCTCAATACGGTACAAACTTGTGTTTGCAATAAGTATCGCA CTACACATGTAAATGTGTTTAAAACTTTAAATCTCATCGTGCATCCTGATTCAAGAGCTGAATCTTATGATATGTTTCAA AGTTGCGTGCATGTTGCACTTTAGTCCAGTCATGCTATGTGTGATTCAACTTCTTATGATTCAAATAGTTTGAATTATAT TTTGATTATTTACTAGGATCTAAGTATTAGCAAAGTAATTTGCATGCATTTTGTCATTTTATTGATGTTTTTTTGGCTTA TTGCTTAGAACTAGATTGAACACTTGTTCTTTCCGATTTACCAAAAAAAAAAAGATTGAACACTTCAACTTTGTACAACT ATTTTTCTTCCTATGACTTGAATTTGAATTTTGATTATTTTGAAGTATATTTATATGATATATCAATAAATTAATCATTT TATGACTTAATTTTTTTGTATTTATATATATCTTACGAGGCAATTCATGATTCAGAAATTAGAGTCTAATGATACAAATA TTGTTAAACAAGGAATTTAGTCTTGTAATTATCATTTTAATTGCCTCTGTTAATAGGGTACCATTTTGGCATGTGTAGTA TTGTGTGATGTACTGATTTTTTATTTTATTTTTTAGTTTTAGCGCAGTTTTTGTATTTTTTTCCCGTGTGCATTACTGAA TTGAACGACCTTCTATTTTTGCAGGTATGAATATGAATTTATTCAGAGGATCATGGAAGAAGCCAATAATATTAAAAACT ACTTGGATGTGGAATAGATGGAAGGTCTTATTTTCTCTCACAATAAGTGGTGGATGAGAAAGAACTAATTGGAAACGATT AATGGGTAAAAATAGATTGTTGTAACGATGTTCATGTTCAAAGTTAAGAATTTGCTTTGATACGTGGCAAGTTGGGGAAT GAATTCAAAGTTCATGTGATTTCTATTGTAACTAGACTAAGACATGCACGTTGCCCGGTCGGATACATCTGAGCCAATTA TAGAGAAGTCATTCATAATTGAATCCAAGTTAAATGAATCTCCTTCCTAGTTT
CDS sequence (LotjaGi1g1v0033300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACCAAGACTCTATCACTGTCACCACACTTGCTGGCTTGATAAGGTCATTTATTTGTGAAGGAATATTTCGGTT TTGTGCTAGAAATATCATTAGAGAAATAAACAATAAGAACAAGGATCTGATTTCACGTCGAGATTATTTTCTGGGAAAAG TTGAAGAAATAGGGGAAACAACAAACGCCGTTTTGAAGTGGCTAAATGATGTGGAGAAAGCCTTGGATGAGGTAGAGATG CTGGAAAAGAAAATGGAAACCGAGTCTCGTCTACTTGGGATATATGGTGTGGATCATGAGACATACTGGCGGTACAACGA AATGGTAGACATAATAGGGGGCCTGAATTACAACTTTCCAATGGTAGGCCCAATTCCACATTTACAGGAATGTGCTTCTG AATATTTTGTGACTTTCAAGTCTACAGAAGAGGCTTCAGAACAACTTTGGAAGGCACTGCATGATGACAGTAGCTATGTG ATTGGATTGTATGGGAGGCGGAACTCCGGTAAAACAACATTGGCTAAAGCAGTGGGCGAGAGGAGCAAGTATGTAAAGAC TTTTAGCAAAGTTGCATTTGCCACTGTCTCCAAAAATGTAAATGTAAGCAGGATTCAAGATGATATTGCTGCCTCCTTGG GTTTGACGTTTTCTGATATTACCAAAGAAGGAAGAGCCGGAACAATATCTTCTGAATTGACCAAAGAGAGTGGTTCAGCT CTTGTAATATTGGATGATGTTCGGGCCAAGGTTGAACTAGAGGATATAGGTATTCCTCTTGATCATGGTAATTGCAAGGT CCTTTTAACCACACATAGCCAACTAGAATGTGCGTTGATGGATTGTCAGCTGGAGATTCCTCTACATCCCTTATCTAAAG AAGAAGCTTGGATGTTGCTCAAATATCATTCAGGAATAAATGAAGACTCTTCATATGACTTATTAAACCTGGCACAGGAA GTTGCTTTTGAATGTGAAGGGTTACCTGGTATAATTAAAAAGGTGGGATCTTCCTTGAAAAATGATCCGATTGAAGTGTG GAAAGCATCATTAGAAAAACTCAAACATTCAAAGGCCTACAACCAGATTTTTCTGAGTTTTAAAGGAGGAGATACTTGCT TCTCTTTTACTGGTTTTCTCTATCATGATTTGTGTGAAAAGGGATTGAAGACCTTCATGGATGATGGAGAATTGTATGGT GAGGAACAAATTTCACCATCTATTATTAAAGCTATTGAAGCATCATGGCTTTCAATTATTGTTTTATCTGAAAATTATGC AAACTCTGCTCGATGTCTTGATGAACTTGTCAAGATTCTTGAGTGTAAAAAGATGAAGAACCAATTAGTTTGGCCAATTT TTTATAAAGTGGAGCCCTCAGATATAAGGTATCAACAAAGTAGTTATGGCACAGCCATGGCTGAACACGCAAAGAGTTTT GGAAATGACTCTGAGAAGATACAAAAATGGAAATCAGCTCTTTTTGAAGTTTCCAACTTGTCTGGAAAGGCTTACAAAAC AGGGTATGAATATGAATTTATTCAGAGGATCATGGAAGAAGCCAATAATATTAAAAACTACTTGGATGTGGAATAG
Protein sequence (LotjaGi1g1v0033300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQDSITVTTLAGLIRSFICEGIFRFCARNIIREINNKNKDLISRRDYFLGKVEEIGETTNAVLKWLNDVEKALDEVEM LEKKMETESRLLGIYGVDHETYWRYNEMVDIIGGLNYNFPMVGPIPHLQECASEYFVTFKSTEEASEQLWKALHDDSSYV IGLYGRRNSGKTTLAKAVGERSKYVKTFSKVAFATVSKNVNVSRIQDDIAASLGLTFSDITKEGRAGTISSELTKESGSA LVILDDVRAKVELEDIGIPLDHGNCKVLLTTHSQLECALMDCQLEIPLHPLSKEEAWMLLKYHSGINEDSSYDLLNLAQE VAFECEGLPGIIKKVGSSLKNDPIEVWKASLEKLKHSKAYNQIFLSFKGGDTCFSFTGFLYHDLCEKGLKTFMDDGELYG EEQISPSIIKAIEASWLSIIVLSENYANSARCLDELVKILECKKMKNQLVWPIFYKVEPSDIRYQQSSYGTAMAEHAKSF GNDSEKIQKWKSALFEVSNLSGKAYKTGYEYEFIQRIMEEANNIKNYLDVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 64 | 91 | 28 | - | – | |
| Gene3D | 131 | 285 | 155 | 1.0E-18 | – | |
| SUPERFAMILY | 139 | 360 | 222 | 2.18E-33 | ||
| Pfam | 143 | 359 | 217 | 2.7E-30 | ||
| PRINTS | 160 | 175 | 16 | 4.6E-8 | – | |
| PRINTS | 234 | 248 | 15 | 4.6E-8 | – | |
| PRINTS | 325 | 339 | 15 | 4.6E-8 | – | |
| Gene3D | 339 | 528 | 190 | 9.8E-55 | ||
| SUPERFAMILY | 353 | 502 | 150 | 5.62E-32 | ||
| ProSiteProfiles | 359 | 500 | 142 | 21.389 | ||
| SMART | 360 | 500 | 141 | 4.7E-32 | ||
| PANTHER | 362 | 521 | 160 | 1.4E-68 | – | |
| PANTHER | 362 | 521 | 160 | 1.4E-68 | – | |
| Pfam | 362 | 520 | 159 | 4.6E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0033300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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