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LotjaGi1g1v0033400.1

Overview

Field Value
Gene ID LotjaGi1g1v0033400
Transcript ID LotjaGi1g1v0033400.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:4356656..4364497) extracted from Lotus japonicus Gifu genome v1.2.

TTCTGGGGAGTTGGGTCTCAAGTCAGCATCCTGTTGTTTATAAAGTATGTTTCCTACCAATAATTGAAGGCGTTAGAGCC TTCAATATTATTTATGATATGTGAATCTATTTTTTTAATTTGAACCATATTAGGATTACTAAGTCAGAGTACCAACTCAA AGCACCTGTCAGCAAAATCAAAGGTTGGAGGAACTGAGGAAGTAAAGTCAACCACCAAAGATGTATTCTTTTCTTTTGGT AACCTGTCACTTAGAGCAACTCCAACCCTTGGTTCCTTATCTGGTTTCTTAACACACTATTCAGCACTATTCTGCACTAT TTCTGTGGACCCGTACTGCCACATCAGACTTAAGAAACTCCTAAGGAACTGAACCAGATTTTGCCCAACCCATGGTTTCT TAAATTACTATTTGAAGGGTCCCACCCGTGTCCCACCATACAACATAAATTAATAATATTTATTTTCACACAATTTAGAT TTAAAATTTAATACTAAATCAATTAAAAAATAATTTAATTAATATTTATACGAATTTAATTTAAATTTACTTAATAGAAC CGGTCAAACCGGTAAATTCAAAAAAATTTAAAAAAAAAAGCCCAAACGGGCAGAAAACCGGGTCCAGCCGGTCAAAACCG GTCTGGACCGGTTCCAAACGGTTGGATGACCGGCTAACCCGGTCATCCACTATAAATACTCCCTTATCACTCCCTCCCTC ATTAACCCTAGCCGTTTCCCCTTTCTTCTTCCTCTGCTCTTCTTTTCTTCTTCCTCTGCTCTTCCTCTGCTCTTCTTTTC TTCTTCCTCTTCTCTTCTTCCTCACAGCCAACTCCTCACCTCCTTCGACCCGCCACCTCACCGCCTCCTCACCGCCACCA AACACCCACAACCTCAAACAAAACCCACCTCTCCGCCACCAAACACCCACAACCACAACCAAAACCACCTCACCGCCACT CACCCGCCACCAAACCCGCCTCACCGTCTCCTCATCGCCACCAAACACCCACCACCGCAACCAAAACTTACCCCAGCCTC CACCAAAGCTTCAATCCGGACCCAAATCGCCCCTCAAGCACTGGATCGGAGACATGCAGGCCTTCCACCCTCCGCCACCC TCCGCCACCGCCACTAGATCGGAGAAAAACAACCGGATCAAGCTTTCCTTTACACCCTTCAGCTTCTGTAATTTTTTTTT TCATTTTTCTTTGTAAAAATTTAATCTTCTGAAGCTTTGTAATTATTTTCTATTTTTATTGTTTGAATAAAATTGTAGGT AGTTCATGCAATCTGTTTCTACTATTTCTTCCCTCTAAAATCTGTTGGAAGTGAATGTGAGAGAAAGTATGTTATTTTAA TTAAGAAACTGATAAAGCAGAGTTGCTTGCAGAAGCAACTCTGCCTACTTTTCCTTAGCTAAGGAACCTTAAGGAACCCT GCTCCAATGGGTAAGAAACTGGCCCTTGGTTTCTTAGCAACTCCAACCTGGTTAAGAAACCAGCGTTGGAGTTGCTCTTA AAGGAATATTTTTAGCTTTAATTGAGCTTTGTTAGGGCCTTTGGGATATTGTGCTTGTCACTTGCTCTCGTTAGTTAATT AACTCATTTCACTTGGTATCAATTGAATACATATTAACTCATTACCTCACTATTTGGAATATAATATGCTTAATGATGAT AATAGATATGTTAAGTCTGACTGTTTTTATTTGTTCTATGTTACAGATTTCATTATTCAATGCTTGCATTATTTGCTGCT CAGTTACTTGTTGATATATTTATATTCCGGCTCCTGCAATCCTGCTCCTAGTTTGTACCACAAAATTTATGCAATATTTT CTGATACATAAAATACTTCTGGTTTTGCTTTGAATTATTGACATCTTTTTAATTTGTCCCCCAAATGTGAACGCAAAATA TATATATATATATATATATATATATATATATATATATAAAAAGCCAGACTCGAAAGAACATTAAAAAAAAAAGACCATGA GGCTATGCAGGGGAAAATTTGATAAAATTTACAACCACCAACAGAGCAGAAAGTTTTGGTTAACAAGGGTATATATATAT ATATATATAACACTTAAATAAGAGTTCAAGCATCGGTTTTGCCGGAAGGATTCATATTCAACACTTAAATTGACGAGGTG AATTTATTCATGTATTTTCTCTACTTTGTTCTATTTTTTATCTTTCACTTTAATGGATTCATTTTGTTGCATAAAAGTAC CATGTGTCTGGATTAAGTGTTTAAAGATTATTTTTCAGGTTACTTGTGTAATTGTGTTCAAATGGAAAATGACAACTATG TCTATAGCTCATCAAGATGTTTGTTTCATGGTCTGGAAATCACTGAAAACGTGAACGTTGAAAAGGAGAAGCTGATGGCA AACCGTGATAGTGTGCTGGAAAAGGTTGAAGCCACAAACAAAACAAAAAGAGTCAATGATGCTGTTTGGGAGTGGCTAAA AGATGCAGAGAAACTCATAGAAGAGGAGAAGAAGCTTGAAACAGAGTTGGAGAAGGCTGGATCCAGTAATTGTTTAAGAG GGCCTTTTTGTTTTCTTGATAGTAAGAGGAGATACAAGTTGTTCAGTGAAATGCTAAAGAAAATAAAGATGCTGAATACA AAATGTGAATTTGAGCCATTTTCCATCCCAATTCCAGGTTTAGAGTACTTCTCTTCTATAGATTTTGTGTGTTTTGAGTC CACAAAAAAACTTCTGATCAACTTATGGAAGCACTATTAGATGATCGTATCCATGTCATTGGATTGTACAGGAAGCCGGG CTCTGGAAAAACAAAATTGGTAGAAGCAGTGGGTGAGAAAGTCAAGAATTTAAGGATTATTAATGAAGGTGTCGAAGTGG TCTACCACTGTCGCGTGGGCAACGAATCTTTATTGTTGATCTTTGTCACGGGTGTGAAAAATCTCTCTCTGCCCTGCTAA CCGAGGTTTAAAACCTGAAATGACGAAAAAGCTCGGCTTCAATGGCGGAAGCTTCATCGGGGAGAAAGAAAGGGAGAGGG ATAGGGGAAACACAACCACAATAAAAACGAAAAGAAAAGAAGGATGAATATTGTTGAAGATGAGGAGGGGGAGGGGAAAG GGTTATGTACTTATTTTGAAAAGATGGATGTTTTAATTTTGGGTAGGGTATCATATTTAACAATTAAATTGATGAGGTAA TTTTATGGCTTAAATAAGTTTTTGGTCCCTAACTTTTATCATATGTTTGGCATTGGTCTTTTTCCGCGGAGTAAATATGA GCTTTAGTCCCTAACCTTTGTAAAAAAGTTTGGTTTTGGTCCCTCATGAGCTCTGGATCAACGCCAGAGCTTCAGTGGCC CATGTGACATGGCCATGTGGGATTAATGAGGCCAGGTGGAATAATTTTTTTATTTAAATTAAAAATAAAACAAATTAATC TCTCCATTTATCTAATTTTTTTTAATAAGCTGTGTAAAATATATTGAAATGAAGTACAAAGAATACTTGATATCAAGAGA AGTACAAGGGATACTTCAACCTAATACAAGTAGAAACAAGGGAAAAATAAAAGCTAAGTGTAGCAACTCTACAGTAACTA CATCAATGCTCCACCTACTAGCTGATAAAACCCACCACCCACCACCTCCAAAGAGAAAGACTATAGGAATGATGCTTCAT TAAAACCTTACCAGGAAAAAAACTGATACATCATCATCTTCATCCAAAAGCCATCACCTTCGTCCTCAATTATTGATTTT CACCAACTTTCTAGCCAAACAATACCAGATCCAAACATTTCAAACATATACACTAATTAAAGGAGAAAGACAGATGAGAT GGGGGGCAATTGCTTGCATCTGCCAGATCCAAAATTTACTTCATATATAAAATTCCCTCAACCAGATCCCCAAAACCCAA ACCAGAAGTAAGAGATGAAAAAAATCCCAATTCCCTCCACCAAATCCCCAAATCCACGATCAGAAAGAGATGAAGGAGGA ATAACAACTCCAAACTCCAATACCAGAATGAATCGAGATTCTTCCTTGCCACTGCTTGTTCCACCACCGTCACCGCCGAT CTTCAACCGCGTCGTTACGGTAGGGATGTCGCGCCTCTGCCGGAGGCATCATTGTGGTCGTGGGTCTTCTCACCCTCGAT CTCCCTTCCTCCATCGCAGTCTTCTTCCTTCGCGATCTGCTCTACCTCTGCCACAAGTTCTGGATCCATCCCTTCGTCAC CTCTGCTTCATCTCCTTTCTCTAATTTGGGTCCGGGTTTGTTTGGATTGGTTTCATCTTCTGTTTGGTTTGGCTTCATGG TTTGGGGCTTGGATTTGTGGAGGAATAAAGATGGCAAGACACCTTGGATCTGGGTGTAACATATGGGTTTTGCTAAAAAG TTCAAGGGTGGGCAGAAGATTGGGTTTTGGGGAGTTGGCGGTGGTGGTGCTGGTAGGGGGTTTTAGAGGAGCTGGTGGTG GTTTTGGGTGAGAGGGGTTGGCGGTGGTTGTGCTGAGGGTGGGGTTTCGCTGGTGATGGTGGTGTTGGGTGAGAGTGGGA TGAGAAGAAGGAAGAAGAAGATGAAGGGAATTATGGGTGCCTGGGTTTTGAAGATGAAGAAAATGGTTAAATTTCTAGGT TTAGGAGATGAACTTCTAGTGTTTCAATTTTAATGAATGAATGAAATTAATTAGGAGGTAATTAGGTTTTTATTACTGAG GTTAATTCCCATATGTTTTGAATTTAAATATTTTATTATTCCACCTTACCTCATTAATCCCACGTGGTCATGCCATCATG GGCCACCAGAGCACCGGCGTTGTCCCAGAGCTCCGGAGGAACCAAAACCAAACCTTTTGACAAAGGTTAGAGACTAAAGC CCACATTAACTCCGGCGAGGGACCAATGTCAAACATATGGTAAAATTTAGGACCAAAAACTTATTTAAGCCTAATTTTAT TCATGTATTTTCTGAAACAAAACGCGTACGTATTTGATGCCAATTTGTACTTTTATGTGACTGTGACATGTTCCTACTAA TATCTATTCTTCAACTTTGGCTTAAGCCCTGGTTGTCTGTGATTCTCAGAAAGAAAGAGTTGAGGGATCTACATCATCGC TTGTGCCTGCAACATCTTCAACAAGTGAGTTAAAAATTTCATTCACTTTCCTTTGCATATCTTTTTAAAGTTCACATATA TAACTACTACTGATTCTGTGATTTGTCTTCCAGCCAGTTTTTTTAATTTTCACTAAATGCCCAAGATCAATGCTGATAAT ACGGTTATATGGGTATTTAACTAATTAATTAGGATAGAAAATCAAGTTTAAATGATAGAAGCCTTTGTCCTTACTTTCTG GGGATTATAAATTTATATATAACAAAATTTTCTTTGCTATTAGCCAAGCGACAGCATGTATTACAAATTTTCATCTTGTA CTTTAATTGATTCATTTTGTTTTGATTTGTTGCATAAAAATACCATGTGTCTGGATTAAGTGTTAAATGATTATTTTTCA GGTTACTTGTGTTCAATGGAATTTGATGACGAGTATGTCTTTAGCTCATCAAGATATTTGTTTCATGGTCGGGAAATCAC TAGAATGGTGTTGCTTCAAAAGGTGAATCTCAAGGTTAACCGATATAGTGTGCTGGAAAAGGTTGAAGCTATGAAGAAAA CAGAAAAAGTCAATGATGTTGTTCTGAAGTGGCTAAAAGAAGCAGAGAAGCTCATAGAAGAGGAGGAGAAGCTTGGAACA GAATTGCAGAAGGCCAGATCCAATAATTGTTTAACAGAGCCATTTTATTTTCTTTATAGTAACAGGAGATACAAGCTGTT CATTGAAATGCTAAACAAAATGAAGACGCTGAATTCCGAATATGAATTTGGGCCACTTTCCCGCCTAGTTCGAGGTTTAG AGTACTTCTCTTCTGGAGACTTTGTGTGTTTTGAGTCCACAAAAAAAAACTATGGATCAACTTATGGCTGCACTAGAAGA TGATAGTATCCACATCATTGGATTGTATGGGAAGCAGGGCTCTGGTAAAACAAAATTGGTAGAGGCAGTGGGTAAGAAAG CCAAGTATTTAAGGATTTTTAATAAAGTTATATTTGCCACAGTGCCCCAAAACGGAAATATTGTCCGACAGATTCAAGAC CAAATTGCTGACTCCTTGGATCTGACATTTCAAAGATATTCTGAAGTCGCGAGAGCAAATGCGATATCTTCGGAGATTGA AAGTAATCGTCTAGTTCTTGTTATCTTAGATGATGTTCGGGCACGGCTTGAGCGAAAGGATATAGGTATTCCTATTAATG GTAAATGGTGCAAGGTCCTTTTCACCACGCGTAGCCAACAAGAGTGTACCCTAATGGATTGTCAGAGAGAAATCCCTCTG CTTCCCTTGTTTGAAGAGGAAGCTTGGACTTTGCTCAAAAAACATTCATACATTGATGATGAGTCCTCGTTCGACCTATT ATCTTTGGCACGAGAACTTGCTAATGAATGTCAAGGGTTACCTCGTACAATTAAAGAAGTGGGATCTTCCTTAAAAAGTC AACCCATTGAGGAGTGGAAAACCTTATTATACAGTTTGAGACATTCGGCTCGTTACCAAATCTTTATCAGCTTTAGGGGA GGTGATACTCGCCACTCTTTTACAGGTTTCCTCTATGATGCTTTGTGCCGAGAGGGATTCAAGACCTTCATGGATGATGG GGAATTGGAGTGCGGCGACCAGATTTCACAAACTCTTATTAACGCAATTGAAGCATCAAGACTTTCCATTATTGTTCTAT CTGAAAATTATGCGAAATCTGCATGGTGTCTTGATGAACTTGATAAGATCCTGGAGTGTATGACGACGAAGAATCAATTA GTTTGGCCAATCTTTTATAAAGTGGAACCATCAGATGTAAGATATCAGAAAAATAGTTATGGAGAAGCCATGGTTGCACA TGAAAATAGATTTGTGTATGATTCTGAGATGATTCAAAACTGGAGGTCAGCTTTGTTTAAAGTTGCTGGCTTGTCTGGAA TGACTTATAGTACTGGGTATGTGCTATACTTTTAAAAGTTTTTTAGTTATATATGTTCCTTATTTGACGTCTAGTCCACT AGCACTAGTGGTTAATAATATGCTAATTAGTTACTTAGTTTTTAGTTTTTTTAAGTTCTTTGATATGTTTATCAAGAAAT CTAGGCTTCTAAGTGTCATTTTAAAGGATCCTTTGTTAACATGAATGATTTTAACTTCAACGTAGTTTTGTATTATGCGT GACAATCCGTTTTGCGTATGATTAATTCGTCAAGCTTGTGACTTGTGCGTTGCAGGTATGAATATAAGTTTATTCAAACA ATTGTGGAAAGGGCCAAGAATAATAAGAATCGCTTGTTTATACAAAGCACAGATATGGAGTAGAAGGAAGACTTAGTCTC ACAAGACAGAATATGTCACAAGTGTTTGCTAGCTCAAAAATAGACGGTGGTTCTATTGTGTGTTACGTAGGAGGAAGTAG TGTTTGGACACATTTTATATTCAGAAATGGTTTAAAAATTTGATTGGTTTATTTGTGAGAATTGTGTCTATTCTGAGAAT AAAGTCGGATAAAATGCAGGCCGGACCTGTTAATCTTGAATTGCACTTTTTTTATGATGAGTCCAGTTTAGAGGATTTAA TTTCTATTTTGGATCCTTTATCTGAACAGTCAAATCCATGGTTATGATTAATTGATTATGGTAAATCTTATATTGTGACT TAAGGAACAAATCCCCAATTTTAACATGATAGGTCTTTTCCCCTTTTTAATTGTGTCTATTCCATAGTTACTTAATACTC CC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCAACTTATGGCTGCACTAGAAGATGATAGTATCCACATCATTGGATTGTATGGGAAGCAGGGCTCTGGTAAAAC AAAATTGGTAGAGGCAGTGGGTAAGAAAGCCAAGTATTTAAGGATTTTTAATAAAGTTATATTTGCCACAGTGCCCCAAA ACGGAAATATTGTCCGACAGATTCAAGACCAAATTGCTGACTCCTTGGATCTGACATTTCAAAGATATTCTGAAGTCGCG AGAGCAAATGCGATATCTTCGGAGATTGAAAGTAATCGTCTAGTTCTTGTTATCTTAGATGATGTTCGGGCACGGCTTGA GCGAAAGGATATAGGTATTCCTATTAATGGTAAATGGTGCAAGGTCCTTTTCACCACGCGTAGCCAACAAGAGTGTACCC TAATGGATTGTCAGAGAGAAATCCCTCTGCTTCCCTTGTTTGAAGAGGAAGCTTGGACTTTGCTCAAAAAACATTCATAC ATTGATGATGAGTCCTCGTTCGACCTATTATCTTTGGCACGAGAACTTGCTAATGAATGTCAAGGGTTACCTCGTACAAT TAAAGAAGTGGGATCTTCCTTAAAAAGTCAACCCATTGAGGAGTGGAAAACCTTATTATACAGTTTGAGACATTCGGCTC GTTACCAAATCTTTATCAGCTTTAGGGGAGGTGATACTCGCCACTCTTTTACAGGTTTCCTCTATGATGCTTTGTGCCGA GAGGGATTCAAGACCTTCATGGATGATGGGGAATTGGAGTGCGGCGACCAGATTTCACAAACTCTTATTAACGCAATTGA AGCATCAAGACTTTCCATTATTGTTCTATCTGAAAATTATGCGAAATCTGCATGGTGTCTTGATGAACTTGATAAGATCC TGGAGTGTATGACGACGAAGAATCAATTAGTTTGGCCAATCTTTTATAAAGTGGAACCATCAGATGTAAGATATCAGAAA AATAGTTATGGAGAAGCCATGGTTGCACATGAAAATAGATTTGTGTATGATTCTGAGATGATTCAAAACTGGAGGTCAGC TTTGTTTAAAGTTGCTGGCTTGTCTGGAATGACTTATAGTACTGGGTATGAATATAAGTTTATTCAAACAATTGTGGAAA GGGCCAAGAATAATAAGAATCGCTTGTTTATACAAAGCACAGATATGGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDQLMAALEDDSIHIIGLYGKQGSGKTKLVEAVGKKAKYLRIFNKVIFATVPQNGNIVRQIQDQIADSLDLTFQRYSEVA RANAISSEIESNRLVLVILDDVRARLERKDIGIPINGKWCKVLFTTRSQQECTLMDCQREIPLLPLFEEEAWTLLKKHSY IDDESSFDLLSLARELANECQGLPRTIKEVGSSLKSQPIEEWKTLLYSLRHSARYQIFISFRGGDTRHSFTGFLYDALCR EGFKTFMDDGELECGDQISQTLINAIEASRLSIIVLSENYAKSAWCLDELDKILECMTTKNQLVWPIFYKVEPSDVRYQK NSYGEAMVAHENRFVYDSEMIQNWRSALFKVAGLSGMTYSTGYEYKFIQTIVERAKNNKNRLFIQSTDME
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
1 141 141 2.3E-17 –
SUPERFAMILY
SSF52540
2 212 211 2.72E-31
IPR027417
Pfam
PF00931
2 212 211 3.9E-28
IPR002182
PRINTS
PR00364
15 30 16 8.9E-10 –
PRINTS
PR00364
89 103 15 8.9E-10 –
PRINTS
PR00364
180 194 15 8.9E-10 –
Gene3D
G3DSA:3.40.50.10140
208 383 176 3.6E-62
IPR035897
SUPERFAMILY
SSF52200
210 356 147 5.1E-40
IPR035897
PANTHER
PTHR11017
212 377 166 2.6E-77 –
PANTHER
PTHR11017:SF242
212 377 166 2.6E-77 –
ProSiteProfiles
PS50104
213 354 142 27.853
IPR000157
SMART
SM00255
214 354 141 1.5E-37
IPR000157
Pfam
PF01582
215 381 167 8.3E-40
IPR000157

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0033400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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