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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033600 |
| Transcript ID | LotjaGi1g1v0033600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G09430.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4368696..4373317) extracted from Lotus japonicus Gifu genome v1.2.
AGACCATGCGGCTATGTAGGTGAAAAATAAATAAAATATACTAACACCTACAGAACAGAAGGTCTTGGTTAACAAGTATA AGAGCATGAGCTTAACAGAGTCTGAGATCATCTCTATACTTCATCCTAAATGATAACTAGGCACCAAATTAAATCAGCGT TCTAGCAACAATCTTTGCAGGATTATCATTCACCATTTAAATTTTATCTATACTTCCAGTAAGAAGTTTGGCTGAAGCAC TCAGCCAAATCAATCTCAGTGACTTTCTGGTTGTCTGAGAAAGCAAGGTCTTCAAGTGAGTTAAAATTTCATTCACTTCT CTTTGCATATCATTTTTCAACATCACAAATTTTCCTTCTTTTAACACTAATAATTCCGTGAATTGTCTTTAGCATGGAAA TAGTCTAAGATAGATTGACATACTTATGATTTAGTCTATATTATATTTATTTTGCTCTTGCCTTATGGGCACAATAACAA TTTTTTCTTTGCTCTGGTTCTAGTGACAGCATGCCTAAGCATTAAATATATTTTCTCTTATATGTTTCATTCCTAATCTT GCACTTTAAATCATACACCTTGTTTTGAATTGTTTCATAAAAATAGGCCGTTAAAATGTGTCGGGATTAAGTGTTAAATT TATTATTTTCCAGGTAACTTTTGTTTAAATTAAATGGAAGATACACTTTTCTTGCCCATCAAGATATTGATACGTGATGG AATGTATATGGTTTTTGTAAACAAAATCATTGAAAACGTGGACAATGAAATGGAAAAGTTGATTTCAAATCGAGGTTTTG TGCGGCAAAAGGTTGAAGCTACAAACAAAGCAGAAAAAGTCAATGATGCTGTTCCAGAGTGGCTAAAAGATGCAGAGAAA CTCATAGAAGAGGAGGAGAAATTTGAAATAGAAATGGATACTGAGAGATCCAATAACTGTTTTACAGGGCCATTTTGTGT TTTTGGTAGTGAGAGGAGATACAAGTTGTACAGTGAAATGCTAGAGAAAATGAAGACACTAAATACCAAATGTAATTTTG AGCCATTTTCCAGCCCAATTCCAAGTTTAGAGTACTTCTCTTCTGGATATTTTGTGTCTTTTGAGTCCACAAAAAATACC TCGGATCAACTTATGGAAGCACTACAAGATGATAGGAGTCGTGTCATTGGATTGTATGGGAAGCAGGGCTCTGGTAAAAC AAAATTGGCAGAAGCAGTGGGTGAGAAAGCCAAGTATTTAAATATTTTTAATGAAGTTGTTTTTGTCACAGTGCCCCAAA ATTCAAATACTCTTTGGAGTATTCAAGACCAAATTGCGGACTCGTTGGATCTGACATTTGACAGAAATTCTGAACTTGCA AGAGCAAAGGCGATATCTTCAGAGATCAAAAATAAGGATCGAGTTCTTGTTATCTTGGATGATGTTCGGGCAAAGCTTGA GCTAAAAGATATAGGTATTCCTATTAAAGGTAAATGGTGCAAGGTTCTTGTGGCCACACGCCATCAACAAGAATGTACCT TGCTGGATTGTCAAATCGAGATTCCTCTTCATCCATTGTCTGAAGAGGAAGCTTGGACTTTGCTCAAAGGATATTCAGGC ATAGATGATGAGTCCTCCTCCGACTTATTAAATGTGGCACGAGAAGTTGCTAATGAATGTCAAGGGTTACACAGTAGAAT CAAAGATGTGGGATATTCATTTAAAGGTCAATCCATTGAGGAGTGGAAAGCATTGTTAGACAGTTTGAGACATTCGGCTC GCTACCAAATCTTTCTCAGCTTTCGGGGAGATGATACTCGCTACTCTTTTACAGGTTCTCTCTATGATGCTCTTTGCAAA GAGGGATTCAAGACCTTCATGGATGATGGTGGGTTGGAGAGTGGTGATCAGATTTCGCTTTCTCTTACAAGTGCAATTGG AGCATCAAGGCTTTCCATTGTTGTTCTATCTGAAAACTACGCAAGTTCCTCTTGGTGTCTTGAGGAGCTTGTCAACATCC TTGAGTGTAAGAAGACGAAGAATCAGTTAGTTTGGCCAATCTTTTATAAAGTGGATCCATCAGTTATAAGACATCAAAAA AGTAGTTATGAAAAAGCCATGCTTGCACATGAAAATAGACTTGGGAATGATTCTAAGAAGCTGCAGAGATGGAAGTCAGC CTTGTCTGAAATTGCCGGCTTGTCTGGAATGGAATATAGTACAGGGTATGTGGTTTACTTTTAAATTTTTTAGTTAAGTT GATATTACTTAATTTCTTAAGCTTTGTGAAATGTAACATAAAATGTCGTCTTCTAGTTATCATTTTAGAGGTGTCTTCGC TAATAGGAATGTTTTTAGCTTCAATGTGATTTTGTATTTTTTTGTTACAATGTGTGTTTATCTGAGATTAATTAGTCAAA AGCTTATTTTTTTCATATTTTTTAATGATATAAATTTTGAATAATCAAAAGACAGTGGAAGCTTTGCGCATGAGTGAATT AAAATGTTTTGTATTCTCGCAGGTATGAACATAAATTTATTCTAAGGATTGTGGAAAGGGCCAAGAATATTAAAAGTAGT TTATATGTACGGAGCATAGATATGGAGTAGAAGGAAGAACTTGGTTTCTCATAAGTGCTGCTGAAGACAAAATTGATAGA ATAGGATATTATTTATTCTCTTTGTAATTACGCCTGTAATTAGGGTTTAATATTTATTGTTAGTCAACTAGGTAAGTTGT ATATATAGGGTATTTCATTATCAATAATACTCACGGAATTGATTTCCTTCATGGTATCATTGAGCAGGTTCAGATCCACT TTTCTGACCTAATTTTTTTTCTAATTTCCTTCTTCTTTCTTTCACCCTTAACTGCTTCCGCCCCTTCACTCCTACCCGCC GCCGCACCACTTCTTCCATTGTGCTGCCGCCGCCGCCCCTTTCTCCAGCCGCCGCGCCCTCCCTCGCGCCGCCGCTCTGC ACCACCGCGTGCCTCCTCCCTGCCTCTGCCCGCAGCGCCGTCGTCCCTTGGAGAGCATCTTCACTCTCGCGTTTCTGTCC CTCTTCCAGCGCCTCCGTCGCGCCGCCACTCTCTAAGGCCACACCGCTCCTGGATCGCCGCCGCCGACAGCCGTCCTTGC CGCCGCGACCCCTGCCCGTCGCGCCCAAGCCTGCCGCATCGCCCCTTGCCCGCTGTCTTCTCCTACCCGACAGCTTCAGA TCCGGGTCCATCAAACCCGTCTGACCCGTTTTCCAAGCCCCACTTCAGCGAACCGGACCGGCCCAATCCGGTTCGCCCAG ACCGGTTCTCCCCAGACCGGTTGCCACCCAAACCTTCAAAAAAAAAAAAACAAAAAAAAAACAAAACCCCATAATTTTAT TATTATTCCCATCTTCTTTATTTGCAGCCGGCTCAATGGCTGATACTGATTCTACCACGGGTTCTCCAATTGGCGACACC ACTATGGTTCCCCCGCCGACGGCGCCGCCGACGTCCTCCCCTGCCAAGTCGGATTTCCATCCGGCCCTTGCTGTCACCAA TATCAAAAACAACATTCCTTTTAAACTCGAGATAGACAAGGATCATTATGCTATGTGGGCTGAATTGTTTGAGACTCATG CTCACGCCACTCAGGTGCTCCACCACATCATTCCTCAAGCTGACATGGAGCCTCCTGCGCGCACCGATGCTTCCTATGCT CGGTGGGCCACTCTTGACTCTACCGTCAAACAGTGGATTTATTCCACCATCTCCTTCGACCTTCTCTCCACTGTTATGGA GAAAGGTTCTACTGCTATGGCTACTTGGAACCGTATAGCTTCTATGTTTGAGGACAATCAGAACTCTCGTGTAGTCGCTC TCGACCAGGATTTCATCTCCACTCGCATGGAGGATTTTCCTAATGTTTCCGCCTATTGTCAGCGTCTGAAACATATCTCT GATCAGTTGCGGAATGTTGGTGCCCCAGTCAGTGACCATCGTCTTGTTCTTCAGTTGGTCTCTGGTCTCACTGAGCCCTT TCGTGGTGTTGCCACCCTGATCCGTCAGAGCGAGCCTTTGCCACCTTTCCTCAAGGTCCGCTCCATGTTGATTCTAGAGG AATCTGGTCTCGCCAGGATGTCAGGTCCGGCCTCTCAGACTGCTTTGCACACCTCTGCTTCCCGTCCACATGCCTCCGTT GACTCCTCTCAGCAGCGCCCCACCTACCGCAGCGATCAGGGCCACTCCAACCATCGTTATGGGTCAGGGCACAATCGCAA TTATCAGGGTGGTTCTGGTAAACCTAAGAAGAAAGGTGGCTCCCGTTATCCTGGATCATCTGGCTCCTCTGGTTCCTCTG CTGCATCTCCTCCACCCTGGCGCCCACCACCGCAGGCATCCTGGAATCCCTGGGGTTGGGCTCCTCCCCCTGGTTGGGCT CCTTCCCCTTGGGGCATGCCTCCTTGTCCTTACCCCACATCTCAGTGGTCGCGTCCCATGAGTGCTCCGCAGCAACCCAG CGTTTTAGGTCCGCGTCCTCAGGCCTACACCGCTACTGCTTCTCCAGCACCCACTGATATCGCTGCTGCCATGCACACCA TGTCTTTGACTCCTCCAGACACCACGTGGTACATGGACACCGGCGCCTCGTCCCATACTGCG
CDS sequence (LotjaGi1g1v0033600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATACACTTTTCTTGCCCATCAAGATATTGATACGTGATGGAATGTATATGGTTTTTGTAAACAAAATCATTGA AAACGTGGACAATGAAATGGAAAAGTTGATTTCAAATCGAGGTTTTGTGCGGCAAAAGGTTGAAGCTACAAACAAAGCAG AAAAAGTCAATGATGCTGTTCCAGAGTGGCTAAAAGATGCAGAGAAACTCATAGAAGAGGAGGAGAAATTTGAAATAGAA ATGGATACTGAGAGATCCAATAACTGTTTTACAGGGCCATTTTGTGTTTTTGGTAGTGAGAGGAGATACAAGTTGTACAG TGAAATGCTAGAGAAAATGAAGACACTAAATACCAAATGTAATTTTGAGCCATTTTCCAGCCCAATTCCAAGTTTAGAGT ACTTCTCTTCTGGATATTTTGTGTCTTTTGAGTCCACAAAAAATACCTCGGATCAACTTATGGAAGCACTACAAGATGAT AGGAGTCGTGTCATTGGATTGTATGGGAAGCAGGGCTCTGGTAAAACAAAATTGGCAGAAGCAGTGGGTGAGAAAGCCAA GTATTTAAATATTTTTAATGAAGTTGTTTTTGTCACAGTGCCCCAAAATTCAAATACTCTTTGGAGTATTCAAGACCAAA TTGCGGACTCGTTGGATCTGACATTTGACAGAAATTCTGAACTTGCAAGAGCAAAGGCGATATCTTCAGAGATCAAAAAT AAGGATCGAGTTCTTGTTATCTTGGATGATGTTCGGGCAAAGCTTGAGCTAAAAGATATAGGTATTCCTATTAAAGGTAA ATGGTGCAAGGTTCTTGTGGCCACACGCCATCAACAAGAATGTACCTTGCTGGATTGTCAAATCGAGATTCCTCTTCATC CATTGTCTGAAGAGGAAGCTTGGACTTTGCTCAAAGGATATTCAGGCATAGATGATGAGTCCTCCTCCGACTTATTAAAT GTGGCACGAGAAGTTGCTAATGAATGTCAAGGGTTACACAGTAGAATCAAAGATGTGGGATATTCATTTAAAGGTCAATC CATTGAGGAGTGGAAAGCATTGTTAGACAGTTTGAGACATTCGGCTCGCTACCAAATCTTTCTCAGCTTTCGGGGAGATG ATACTCGCTACTCTTTTACAGGTTCTCTCTATGATGCTCTTTGCAAAGAGGGATTCAAGACCTTCATGGATGATGGTGGG TTGGAGAGTGGTGATCAGATTTCGCTTTCTCTTACAAGTGCAATTGGAGCATCAAGGCTTTCCATTGTTGTTCTATCTGA AAACTACGCAAGTTCCTCTTGGTGTCTTGAGGAGCTTGTCAACATCCTTGAGTGTAAGAAGACGAAGAATCAGTTAGTTT GGCCAATCTTTTATAAAGTGGATCCATCAGTTATAAGACATCAAAAAAGTAGTTATGAAAAAGCCATGCTTGCACATGAA AATAGACTTGGGAATGATTCTAAGAAGCTGCAGAGATGGAAGTCAGCCTTGTCTGAAATTGCCGGCTTGTCTGGAATGGA ATATAGTACAGGGTATGTGGTTTACTTTTAA
Protein sequence (LotjaGi1g1v0033600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDTLFLPIKILIRDGMYMVFVNKIIENVDNEMEKLISNRGFVRQKVEATNKAEKVNDAVPEWLKDAEKLIEEEEKFEIE MDTERSNNCFTGPFCVFGSERRYKLYSEMLEKMKTLNTKCNFEPFSSPIPSLEYFSSGYFVSFESTKNTSDQLMEALQDD RSRVIGLYGKQGSGKTKLAEAVGEKAKYLNIFNEVVFVTVPQNSNTLWSIQDQIADSLDLTFDRNSELARAKAISSEIKN KDRVLVILDDVRAKLELKDIGIPIKGKWCKVLVATRHQQECTLLDCQIEIPLHPLSEEEAWTLLKGYSGIDDESSSDLLN VAREVANECQGLHSRIKDVGYSFKGQSIEEWKALLDSLRHSARYQIFLSFRGDDTRYSFTGSLYDALCKEGFKTFMDDGG LESGDQISLSLTSAIGASRLSIVVLSENYASSSWCLEELVNILECKKTKNQLVWPIFYKVDPSVIRHQKSSYEKAMLAHE NRLGNDSKKLQRWKSALSEIAGLSGMEYSTGYVVYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 67 | 87 | 21 | - | – | |
| Gene3D | 136 | 290 | 155 | 1.8E-20 | – | |
| SUPERFAMILY | 138 | 362 | 225 | 1.17E-31 | ||
| Pfam | 150 | 362 | 213 | 7.0E-28 | ||
| PRINTS | 164 | 179 | 16 | 1.2E-5 | – | |
| PRINTS | 238 | 252 | 15 | 1.2E-5 | – | |
| Gene3D | 333 | 513 | 181 | 7.6E-57 | ||
| SUPERFAMILY | 357 | 505 | 149 | 2.75E-36 | ||
| PANTHER | 361 | 516 | 156 | 5.7E-75 | – | |
| PANTHER | 361 | 516 | 156 | 5.7E-75 | – | |
| ProSiteProfiles | 362 | 503 | 142 | 27.672 | ||
| SMART | 363 | 503 | 141 | 1.1E-34 | ||
| Pfam | 364 | 499 | 136 | 2.0E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0033600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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