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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033700 |
| Transcript ID | LotjaGi1g1v0033700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72930.1 toll/interleukin-1 receptor-like protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0033700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4391282..4394925) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACCTCTGAACCTTCAACGGTGCTCGTGGGCCGTCACCTTCAACAGAGCAGAAGCAGAACGCTTTGGTTATGAACA TGCACAGTTTGAGCTCATCTCTAAACTTCATTCTAATTTTGTACCAAGTTAGCGTTTAAGCATCCAACTTCCAGCAAAGA TTATCATATTCACCACTAAAATTGACGAGGTAATTTTATTACTTATTATTCATTTATTTTCTAAACCAAAACTCGTATTT GACCAGTCATAGTGATTGTTGACTTTCTTGTTGTTTTATATGATTCCTACTCAGAAAGAGTAGAAGGATCTCCATCGTTT GTGCCTGCTGCAACATCTTCGAGTGAGTTCCAATTCCATTAATTTCTCTTTGCATATCTTCCTTTTATTAACTATGCTGC TGATTATGTGATTGTGTTTTCTAACACAAGAATTATCGGTTTAGACTCAGTTTGGAAGAGTTTATTTGAACTTATATTAT AGTATAAATGCTTATGCAAGTATCTGGGAGATGAGAGCTTATGGAAATAACTTATAGCCTACCTATAAGTGTTTTTAGCT TATTTATATAAGTTGTTCAGATTAACTTATGAATAAGAGTTTATGCTTATCTATAAGCCATTTTCAATTTATTGCAATAA GTTTCAAAAATTAGCTTATGAATAAACGTTTATGGTAAGTGCTTAAATAAGTTGTTTTCCCAAACACACCCTTAATTAAT ATAGGAAGTCGAATAAAATTGATAGTAGAGGATCTTGTTGTTCTTGCCTTCTAGGCGTATATAGTAACAGATTTTTCTTT GCTATGATCCTAGTCAGCGACACTGAAACCATGCCTAAGTATTATATATCTTCTCTCAAATCTGTTTCATTTTTGCCTTG CACTTCAATTCATTCACTTTCATTGATTTGTTGCATAAAATGTTTCCATTAAGAATTGTCAGGATTAAGTGTGAAATTGA TTGATTTCCACTTTTCCAGGTTACCTTTTGGTTAGATGGAATCATTGATATACTGCATTGAGAAAATCCTACATGGTCCT ATCCATAGGTTACGTCTTCTTTTTATAATGAAAAAGGTGGACATCGAAAGGGAGAAGCTAATTTTAAATCGAGAACTGTT GAGGGAAAAGGTTGAAGCTATAGACAAAACAGAAAAAGTCAATGATGCCTTTCTGGAGTGGCTAGAAGAAATGGAGAAAG TCAGAGAAGAGGAGCTATCTGAATTAGAAGCGGCGATTACTGACAGGTCCAATTGGATCAGTCCTGATACTGAGAGGATT CTTAGGTTGTACAATGGATTGCTAGATAAAATGAAGATACTGAATTCAAAATGTGTATTCGAGGCATTTTCCAACCCAAT TCCAGGTTTAGAGTACTTCTCTTCTAGACATTTTGTATGTTTCGAGTCCACAAAAGAGACGTCAGATCAACTTATGGAAG CAATGCAAGATGATAGTATCCATATCATTGGATTGTATGGGAAGCAAGGTTCAGGTAAAACAAAATTGGTAGAAGCAGTG GGTAAGAAAGCCAAGTATTTGAATATTTTTAATGAAGTTGTATTTGCCACTGTGTCCCAAAATACAAATATTGTTTGGAG GATTCAGAACCAAATTGCTGACTTGTTGGATCTGAAAATTGAAAGACATTCTGAAGCTGCGAGAGCGAGAACAATCTATT CGAAAATTGAAAGTAAAGGTCGAGTTCTTGTTATCTTGGATGATGTTCGGGAAAAGCTTGAGCTGGAGAATATAGGTATT CCTATTACACGTCGCCAACAAGAATGCACCTCGATGGATTGTCAAAGAGAGATTCCTTTGCATCCCTTGTTTGAAGAGGA AGCTTGGACTTTGCTCAAAAAATATTCAGGCATAGATGATGAGTCATCGTCTGCCCTATTAACTGTGGCACAAGAAGTTG CTAACGAATGTAAAGGGTTACCCAGTACAATTAAAGATGTGGGATCTTCCTTAAAAGGTCACCCCGTTGAGGAGTGGAAA GCAGTCTTAGGCAGTTTGAGACATTCAATGGCTCGCTACCAAATTTTCCTCAGCTTTAGGGGAGATGACACTCGCTACTC TTTCACAGGTTCTCTCTTTGATGCTTTGTGTCGAGAGGGGTTCAAGACATTCATGGATGATGGGGGATTGGAGAGTGGTG ACCAGATTTCACTATCTCTAATAAACGCAATTGAAGCATCAAGGCTTTCCATTGTTGTTCTTTCTGAAAATTATGCATCT TCCTCATGGTGCCTTGAGGAACTTGTCACGATCCTTGACTGTATAAAGAAGAAGAATCAGTTAGTTTGGCCAATCTTTTA CAAAGGGGATCCATCAGATATAAGGCATCAGAAAAGTAGTTATGGAAAAGCCATGGCTAAACATGAAAGTAGACTTGTGA ATGATTCAGAGAAGGTGCAAAGATGGAGGTCAGCTTTGTCTGAAATTGCTGGCTTGTCTGGAATGCATTATAATACTGGG TATGTGGTTTACTCTTAAAACATTTTTTTTGTGAAGTTCCATGTTTTTACGTTACGTTCCATATTTAATATCTAGTCTAC TAGCACTAGTGGTTAATTACTTTCATTTTTAAGCTCGGTGAAAGGTTTACCATGAATCTAGTCTTCTAATTGTCACTTTA AAGGTGACTTTCTGATCTGTAATCTTTTTTTAGTTTCAATGCGGTTTTGTATTTTGTGTGACAAGTTATTTTTGTGTAAG ATTAATAAGTGAGGCTTTTATTTTTCTTATTTTTTTAATGATATAGATTCTGAATAATGGAAAGACAATGCAAAAATTGT GCAGAAGTGAATTAAAATGCCATGTACTCTTGCAGGTATGAACATAAATTTATTCAGACGATTGTGGAAAGGGCCAAGAA TAATAGAAATCGCTTGTATGTACAGAGCACAGATATGGACTAGAAGGAAGACTTTGGTTTCTCATAAGGTGCTGCTAATC ACATAATTGATCACAAGTGTTTGCTAGCTTAGAAATGGATGACGATTCTTAATGTGTGTAAGTAGTGGGAAGTAGTTTTG GACACATTGTATACTCAGAAATGGATTAAATACAATTCAGGTGATTTTGTGATGTGAGAATTTTGTGGGTATTCTTCTTC TCTTTGGTAATTTTGGATTGTCTAAGAAATGGATGGCGGTTTTAATCTGTATGTTGTTTTTTGGTACAAATTGTAATGTG TATGCTAAGTAGAAGGAAGTAGTTTTGGACAGTTTAAAGTAAATTTCCATAACTGCATAAGCTAGTGGCTGCCATTTCTA ATGAACAAACAGATAAGTTTTTCTCTACTCCTAGGGACTAACTACTACATTGTCTGAAATCTAATCCCCTCCATTTTATA AACAGATCCAAGTGCATGTAGAAATCACTAGCAGTAACTGTGCCAAGGGATTTAAACCAGTAAAATTCCAATGTCAAGGA TCTCCTTTGCTGTCTTTGTGATCAATAATCAATCCCATCATACAACTATTATAAAAAATATCCGTCGTTATTGTGGTGAG ACCAAGATTTATCGGATTAGTTTTAGTGAGAAATCTGTGCTTTGAACTTCAGAAACATAATTAGGTTGTTGAAGTAATAT GCTAATAAAACAGCTTATTAGAAACATATTTATAAACTTATATA
CDS sequence (LotjaGi1g1v0033700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCATTGATATACTGCATTGAGAAAATCCTACATGGTCCTATCCATAGGTTACGTCTTCTTTTTATAATGAAAAA GGTGGACATCGAAAGGGAGAAGCTAATTTTAAATCGAGAACTGTTGAGGGAAAAGGTTGAAGCTATAGACAAAACAGAAA AAGTCAATGATGCCTTTCTGGAGTGGCTAGAAGAAATGGAGAAAGTCAGAGAAGAGGAGCTATCTGAATTAGAAGCGGCG ATTACTGACAGGTCCAATTGGATCAGTCCTGATACTGAGAGGATTCTTAGGTTGTACAATGGATTGCTAGATAAAATGAA GATACTGAATTCAAAATGTGTATTCGAGGCATTTTCCAACCCAATTCCAGGTTTAGAGTACTTCTCTTCTAGACATTTTG TATGTTTCGAGTCCACAAAAGAGACGTCAGATCAACTTATGGAAGCAATGCAAGATGATAGTATCCATATCATTGGATTG TATGGGAAGCAAGGTTCAGGTAAAACAAAATTGGTAGAAGCAGTGGGTAAGAAAGCCAAGTATTTGAATATTTTTAATGA AGTTGTATTTGCCACTGTGTCCCAAAATACAAATATTGTTTGGAGGATTCAGAACCAAATTGCTGACTTGTTGGATCTGA AAATTGAAAGACATTCTGAAGCTGCGAGAGCGAGAACAATCTATTCGAAAATTGAAAGTAAAGGTCGAGTTCTTGTTATC TTGGATGATGTTCGGGAAAAGCTTGAGCTGGAGAATATAGGTATTCCTATTACACGTCGCCAACAAGAATGCACCTCGAT GGATTGTCAAAGAGAGATTCCTTTGCATCCCTTGTTTGAAGAGGAAGCTTGGACTTTGCTCAAAAAATATTCAGGCATAG ATGATGAGTCATCGTCTGCCCTATTAACTGTGGCACAAGAAGTTGCTAACGAATGTAAAGGGTTACCCAGTACAATTAAA GATGTGGGATCTTCCTTAAAAGGTCACCCCGTTGAGGAGTGGAAAGCAGTCTTAGGCAGTTTGAGACATTCAATGGCTCG CTACCAAATTTTCCTCAGCTTTAGGGGAGATGACACTCGCTACTCTTTCACAGGTTCTCTCTTTGATGCTTTGTGTCGAG AGGGGTTCAAGACATTCATGGATGATGGGGGATTGGAGAGTGGTGACCAGATTTCACTATCTCTAATAAACGCAATTGAA GCATCAAGGCTTTCCATTGTTGTTCTTTCTGAAAATTATGCATCTTCCTCATGGTGCCTTGAGGAACTTGTCACGATCCT TGACTGTATAAAGAAGAAGAATCAGTTAGTTTGGCCAATCTTTTACAAAGGGGATCCATCAGATATAAGGCATCAGAAAA GTAGTTATGGAAAAGCCATGGCTAAACATGAAAGTAGACTTGTGAATGATTCAGAGAAGGTGCAAAGATGGAGGTCAGCT TTGTCTGAAATTGCTGGCTTGTCTGGAATGCATTATAATACTGGGTATGAACATAAATTTATTCAGACGATTGTGGAAAG GGCCAAGAATAATAGAAATCGCTTGTATGTACAGAGCACAGATATGGACTAG
Protein sequence (LotjaGi1g1v0033700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESLIYCIEKILHGPIHRLRLLFIMKKVDIEREKLILNRELLREKVEAIDKTEKVNDAFLEWLEEMEKVREEELSELEAA ITDRSNWISPDTERILRLYNGLLDKMKILNSKCVFEAFSNPIPGLEYFSSRHFVCFESTKETSDQLMEAMQDDSIHIIGL YGKQGSGKTKLVEAVGKKAKYLNIFNEVVFATVSQNTNIVWRIQNQIADLLDLKIERHSEAARARTIYSKIESKGRVLVI LDDVREKLELENIGIPITRRQQECTSMDCQREIPLHPLFEEEAWTLLKKYSGIDDESSSALLTVAQEVANECKGLPSTIK DVGSSLKGHPVEEWKAVLGSLRHSMARYQIFLSFRGDDTRYSFTGSLFDALCREGFKTFMDDGGLESGDQISLSLINAIE ASRLSIVVLSENYASSSWCLEELVTILDCIKKKNQLVWPIFYKGDPSDIRHQKSSYGKAMAKHESRLVNDSEKVQRWRSA LSEIAGLSGMHYNTGYEHKFIQTIVERAKNNRNRLYVQSTDMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 25 | 45 | 21 | - | – | |
| Coils | 60 | 83 | 24 | - | – | |
| SUPERFAMILY | 120 | 345 | 226 | 4.27E-31 | ||
| Gene3D | 127 | 273 | 147 | 2.0E-16 | – | |
| Pfam | 143 | 346 | 204 | 7.4E-27 | ||
| PRINTS | 157 | 172 | 16 | 7.1E-10 | – | |
| PRINTS | 231 | 245 | 15 | 7.1E-10 | – | |
| Gene3D | 278 | 346 | 69 | 3.0E-5 | – | |
| PRINTS | 312 | 326 | 15 | 7.1E-10 | – | |
| PANTHER | 345 | 510 | 166 | 3.1E-80 | – | |
| PANTHER | 345 | 510 | 166 | 3.1E-80 | – | |
| ProSiteProfiles | 346 | 487 | 142 | 28.65 | ||
| SUPERFAMILY | 346 | 489 | 144 | 6.93E-38 | ||
| SMART | 347 | 487 | 141 | 4.1E-35 | ||
| Gene3D | 347 | 516 | 170 | 7.4E-63 | ||
| Pfam | 348 | 515 | 168 | 2.0E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0033700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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