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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0036300 |
| Transcript ID | LotjaGi1g1v0036300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A072VP93|A0A072VP93_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0036300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5074089..5076883) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACTCAAGGATATATTTATGAGGGTATAACTCTAGTATATAAACTCTTCCTCACTCCCCTGCCGTAATCAAAACCGA GAGCTCTTCATTCCAGTATGTGTTCGAAACCACCGGCGGCCGTTCTGTCACGGCAGCCGTCGCCGACGATCTTACCAGAC GAAGTCCTCGGCGAGATCTTCGTGAAGCTTCCGGTGAAAATCCTGCTACAATTGAAGTGCGTTTGCAAATCATGGAAAAC CCTAATCTCCGATCCCCAATTCGCCAGGTACCAATACCAATCCCACAGATCAATCATGGCCAACGAGCGATTGGCCTTCT TCGTCGACGGTAACCCGAGCCGAGTCGTAACGTGTTCTGTGCAATCACTGATCGAAACCCCATCAATCCCTGCTGAAACC GTTGAATTCACCATGAGATTGGAGCGCGGTTACGAGATTATAGGTTCTTGCAATGGGTTGTTGTGTTTGTTTGATAACAG TTGTTGTTTCAGATTGTGGAACCCTTGTACCAGAGCGAAATCGGAGAAGTCGCCGGAGGCGCAGGGTTTGCGTGGTGAGA TGATGAGACAATGTGGGTTTGGGTATGATAAGGTGAATGACAAGTACAAGGTGATGACATTGGTTAATGTCGAGGTTCGT GTGAAGAAGAAGGGTTTACAGGTTAAAACTGTGGCTAAGGTTTATACCTTTGGTGAAAATTCGTGGACAATGATTCCTGG GGATCTCCAGTGCGTTCCCGATTCGTGGAATAAATTTGGGCAATTTGCGAGTGGTAATCTGCATTGGCTGACTACGACGG TGATCGATCAGGGTAAAGTGGTTCTTTCCATGGATGTGGAGAATGAGACTTGTGGTCAATTGTTGCTACCTCCTCATTTG AGCGCTCGTGATGACGTGAGCCTGCATGGCTCCGGTGACGGTCTTTATGTGTGTCAATTTTTCCAAACTCATTGGGATTT GTGGTTGATGAAAGAATATGGAGTTCAGGAGTCTTGGACTAAATTTATGACGATGCCTCGCGAGGAATCCCCTTTTACTA GTTGTGCTCTTCTTTTTTTTCCCTTTTGCATTTTGGAAAATGGTATTGTTCTTGTGAGAACTACATGTTCCCATTCCCAT CTAGTTATTCGGTATGACTCAAATGATGGCTCATTTAGTCATTGTATGATTTTGCGAGATCAACACGGGAAGAATGCTCG GGTTTATCACGAGAGTCTAGTACCACCACCATGATCAATTAGGCTGGGTTAGAGGTATGAGCTTCACCTTGCTTGAGGTT TTTTGGGTAAAGTGAAAAGTTTAAATTGGTATAATTCTATACAGGTGTGCAAAGTTTAAAGTGCAAGAAGAAAATGAAGT TACTTTCCTGGCTAAAGTGAATGAAGGGACAGATTTGCACTCTATATTCTCTGATGATAATGAAGAATAGGTTGAGTACA CCTCCTAACAAGTAATTGTCATATAACAAGGTTATGCTCTATCGTATGTTTTGGTTTTCTATTTCACTGGTTGTAATTTT TGGAATATATATCATCTTAGACTTCAAGAAGTATTTCTTTAATCTATGGTTTCATGGGAATAATCATTGCTCAGCCTTTT CATTTTGTTTTCTGATGTCCTTTACATGCCCTTTACTATGTTTGCCCTTATCCACATTGATTTCCTTGAAATGGTTTCTA TTTCTCTACTTATTTAATTAATGTAATGGACCATCTTGAGTGTGGAATTTGTTATGGATTGCTATAGGCAAAAGCCAGTG ATGGGTTGGATGATAAATTTTCTATTAGATAAGCTCATATGTTGCAGTCATGGTACTAGGTAAAGAAACAGGACATTTGT CAAAATAACAATATTTCCAGTAATTAGATTGACTGACAAAATCAAGACAGCATAAAGACAAATGAACAATTAAATACAAT TAAATTTCACTTGGAAAAAGAATCACATAAATCTTCCCATACTTGATGACTAAGTTGTAATGAGTTCTTATCAGTTATCA CTGTTTTTGTACATGTAACCTTAGTGAATGAATCACATCGAAAATATGCAGCAAGTAGTGTGTTACTCGTCAGGTTTGGT TTGTTATATTGTTCTGATGCCAACAAGCACTTTTAGAACTTAGTAGGATTATAAAGTTTGAATAGAGTTCTTTGATGAAG TGAAACATGTCAGTGAGAAGAGAGGATTAATTACAATGTCAATGGCCGTAGTTACAGTTCATGTGTGAAACAAGAAGAAA GGAATAATGAAGTAAAAATCGAGAAACATAAAGCCACATCTCTCAGTAGTTTTGATTCTCTTGATCATTTAAACAAAGCA TATTTGCTTGATAAGGAAACCTATCTAATTCTTTGAGCAAGTTCACAATCAAAGCCAAAACAAAGAAAGTAAAGCACAAA GCCAGATTCTACTTGAGACTTCTGAAGAGTGCCATTTAACTAAGCGCATAGCAAAGAGACTGATTTTCATATACGGATAA TTGCAGGGGATGTGGCATTTTAATGCACATGAATATCCTTTATGAAGATGAATGGAACGAAACAGAGATCGGATCAAACA ACTGCCATAGTTAGGAAATTCAACCATAGTGCTGATTTTGGTTTTTCTTAATTTTCAGTGTCTTTTTAATCCTTGTAAGA TATATGGCCTTGTGCTGCATGACTGGAGTAAACTGTCTTTATGTGTGTCAAATATCTTATAAAACTCATTAGGTTATGTG GCTGAGGAAAGAGTATTGGGTTCGGGAGTCTTGGACTAAATAGTAAATACACGATGATCCCTCACTTGAATTTCC
CDS sequence (LotjaGi1g1v0036300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTCGAAACCACCGGCGGCCGTTCTGTCACGGCAGCCGTCGCCGACGATCTTACCAGACGAAGTCCTCGGCGAGAT CTTCGTGAAGCTTCCGGTGAAAATCCTGCTACAATTGAAGTGCGTTTGCAAATCATGGAAAACCCTAATCTCCGATCCCC AATTCGCCAGGTACCAATACCAATCCCACAGATCAATCATGGCCAACGAGCGATTGGCCTTCTTCGTCGACGGTAACCCG AGCCGAGTCGTAACGTGTTCTGTGCAATCACTGATCGAAACCCCATCAATCCCTGCTGAAACCGTTGAATTCACCATGAG ATTGGAGCGCGGTTACGAGATTATAGGTTCTTGCAATGGGTTGTTGTGTTTGTTTGATAACAGTTGTTGTTTCAGATTGT GGAACCCTTGTACCAGAGCGAAATCGGAGAAGTCGCCGGAGGCGCAGGGTTTGCGTGGTGAGATGATGAGACAATGTGGG TTTGGGTATGATAAGGTGAATGACAAGTACAAGGTGATGACATTGGTTAATGTCGAGGTTCGTGTGAAGAAGAAGGGTTT ACAGGTTAAAACTGTGGCTAAGGTTTATACCTTTGGTGAAAATTCGTGGACAATGATTCCTGGGGATCTCCAGTGCGTTC CCGATTCGTGGAATAAATTTGGGCAATTTGCGAGTGGTAATCTGCATTGGCTGACTACGACGGTGATCGATCAGGGTAAA GTGGTTCTTTCCATGGATGTGGAGAATGAGACTTGTGGTCAATTGTTGCTACCTCCTCATTTGAGCGCTCGTGATGACGT GAGCCTGCATGGCTCCGGTGACGGTCTTTATGTGTGTCAATTTTTCCAAACTCATTGGGATTTGTGGTTGATGAAAGAAT ATGGAGTTCAGGAGTCTTGGACTAAATTTATGACGATGCCTCGCGAGGAATCCCCTTTTACTAGTTGTGCTCTTCTTTTT TTTCCCTTTTGCATTTTGGAAAATGGTATTGTTCTTGTGAGAACTACATGTTCCCATTCCCATCTAGTTATTCGGTATGA CTCAAATGATGGCTCATTTAGTCATTGTATGATTTTGCGAGATCAACACGGGAAGAATGCTCGGGTTTATCACGAGAGTC TAGTACCACCACCATGA
Protein sequence (LotjaGi1g1v0036300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSKPPAAVLSRQPSPTILPDEVLGEIFVKLPVKILLQLKCVCKSWKTLISDPQFARYQYQSHRSIMANERLAFFVDGNP SRVVTCSVQSLIETPSIPAETVEFTMRLERGYEIIGSCNGLLCLFDNSCCFRLWNPCTRAKSEKSPEAQGLRGEMMRQCG FGYDKVNDKYKVMTLVNVEVRVKKKGLQVKTVAKVYTFGENSWTMIPGDLQCVPDSWNKFGQFASGNLHWLTTTVIDQGK VVLSMDVENETCGQLLLPPHLSARDDVSLHGSGDGLYVCQFFQTHWDLWLMKEYGVQESWTKFMTMPREESPFTSCALLF FPFCILENGIVLVRTTCSHSHLVIRYDSNDGSFSHCMILRDQHGKNARVYHESLVPPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 12 | 134 | 123 | 3.53E-15 | ||
| ProSiteProfiles | 13 | 63 | 51 | 10.345 | ||
| PANTHER | 17 | 312 | 296 | 5.7E-49 | – | |
| PANTHER | 17 | 312 | 296 | 5.7E-49 | – | |
| Gene3D | 18 | 55 | 38 | 2.3E-9 | – | |
| Pfam | 19 | 54 | 36 | 5.9E-8 | ||
| SMART | 19 | 59 | 41 | 2.0E-6 | ||
| TIGRFAM | 116 | 344 | 229 | 2.4E-29 | ||
| Pfam | 226 | 327 | 102 | 7.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0036300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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