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LotjaGi1g1v0036600.1

Overview

Field Value
Gene ID LotjaGi1g1v0036600
Transcript ID LotjaGi1g1v0036600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:5102660..5108018) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTCCGTATTGAATACATGGGGTGCCAAACCCAATAGGTGGGGTGTCAAACCCAAATCCCGCATAGTCCCACTCCCT CACCTTCATTGAGAGCCGCTAGCTCTGCAATTTTGCATACGGTATCAAGAAATCCACCCTTCTCAATTCTCAAAACCAAC ACAACACATTCGTTTCTTCTCTGAAAAAGACTCCACCTTTGGCGTCAAACTCTTCAGGGTATGTACTTTTGCAATTCATA ATCTCTCATAGTTAGGGTTCTAATTTTGCATGCAAAGTTTTTATACTGTAAATTTCAATGTTCAATTGAAGAATGCATCA AATTAACCCTTTAATATCTCACAAAATTGATAAAAAGAAACCATTTTTGTGGTGTTTGGTCACTATTTTGGTATGGATCA CTTTTATCATTGTTTTTTATGCTTTTCCTGATTACACATCAGTTAGGCCATGAAAAGAAGAAGGGACTCAATTGGGTCTG CTAGGGTAGCAGTGGAAGTTGATGATGAGCCAGAAAGTCAGCAACTTGGGGCTTCTCTTGCTGATCTTCCAACCCATATC ACTACTGATATTCTGCTAAGACTTCCTGTGAAGTCTATTCTCATTTGTAAATGTGTTTGTAGAAGTTTGAAAGCTATGAT CTCAGACCCCCATTTTGCAAAACTTCACTTTCAGCATTCCCAATCTGGTTTCATGATTCGTGCCAAGGATAAGAAATTGT CGGGAATCATGTACCTTCTTGAGCGCGAGACTGAAAAGTTTGAAAATGATGATGATGATAGCCAATTCTGTTGCTGTGAG AACTCTATTATGAGACCTGAATGCAACTGTCACTTTATACTTGAGCATAAAGTCAAGCTTCCTTTTCGTGGTGCCAAACT AGTTTGGGGTAATAGAGATGAAAGCAAGAAAAGAGGCAGACCAACGGGCAGAGAAAATCATTATTTTAACTTTGAGGGAG AAGATGGTAAGTTTGCTGTGGTGAACTCTTGCAATGGCTTGATTTGCTTGTGTGATAGGGAAAGAGACTATTTTGTTGTT TGCAACCCAATTACAGGTGAGTTCATACGACTTCCACAAACTAGTAGAATTGGTAAAACTAATAAATTCAGTATCCAAGA GATATACGCTGGTTTTGGTTTCCAACCCAAAAATAATGAATATAAGGTGGTAAGAATATTGAGAGGGTTGCAGTTTTATC ATGGTATTATGGCTGCTGAAGTGCACACCCTAGGGACATCAACATGGAGGAATGTTGAAGTTAATTCTATGTATTTTTAC AACCTCCGATTTCCTACTTGTGTTAGTGGGGCACTTCATTGGATCGGTTCCTATCACGGGACTCTATCAATATTGTGTTT CGACTTTGAAAGCGAGAGGTTCCGGTCCTTCCCTACTCCTCCCTGTTTGTATCAAAGTTGTACTGAGAGCATAACCATGG GAGAATTGAGGGGCTCTCTTTACATATGTGATTCCTTTTCTAAGGGTACTCCCTTTGTAATGTGGATTATGAAGGAATAT GGTTTCAAAGAATCGTGGACTAAGATTTTCAGCTTTGATACTATGAGCAGTTATCGCTGGCCTTTTGGTGGATTATATTG GCCAGTAAAACACTTTAAGAATGGTTCTGCTATATTGATGTATCATTCCTACAATTTCTTTATCTACTATGAACCTGGAA AGGATGGATTCAAAATTTTTAAAGTTCGTGGGACTCAATCAAGATTTGATGTTATTCCTCATATTCCTAGTTTTATCTCG CTGAAAGATGTTGTGAAAGGAGACAATATTGAGGTGCTGAATGTGCACTCAAGGTAAGTAAGGATGTAGGTTCTATTACT TTGTTTACTACTTGGCTAGCTATAAAACCACTACTACTATGATAATATGCATCATAATATAGGTATTCATGGGAACATGT GTGGGTTTCCTGTGTTGGTGCTTTTGTTTTAACTTCCTTTTTTGGCATTCTCTAGGAAACTTGTTGCTTCGTCAATCAAT TGCTTACAACTAAACTATGTGTGGAAATTTTTATACATGCTATGATTATTTTTTTTCTATCTACAATGTTTGTAAATCTT TGCTTTTGCAGTTTCTGAAAAAAAAAATCCTTGTAGATACAAACTTGTTTTGCTAATTATGTCTTTTGAACTTTCTATAC ACCTTCCATATTGATGGCGTAATAGAATATGTACAGTTTTTGTAAATTCCAGCTCTTAGATGTAAGTATTTATTATTGTG GAAGAGTAAAAGCAGGTGTTGAAGTCCATTCTGACTTGCTGCTACCTCTAGATTTAGCCACTTTACTCTAGCAATATTCA CTAATATTATTAATATTTTATATAGGTATGAGGAGTTCAAATTTATGGAAGAAAATGCAGATCTTTTCTTGGCTAAAGTG AACGACAAAGTGGGAATATTATACACCATATCAACTGATGATGAAGAATAGGGTGAAGAACACAACCTTGTACAAGTAAT TTCCATGTAACTAGGTTATGTTATATCGCAAATTTTGGTTTGACTAGTTGTAATTTTTGGAAGATATATCATCTTGGACT TCAAATTGAAAGATATTTCGTTAATCTATGGTTTCCTGGGGAATGATTATTGCTCAGCCTTTCATTCTATTTCCTGATGT CTTTCACATGCTTTACTACATCTGTCATATCTGCATTGATTCCCTAATCGGTCCTGTCCTTGAAAAGGGTTTACACTACA GGAAAATTTGTGTTTTGAGGCGGACAATCTGCAGCGGTTGTACTGAAACCGCCGCATAATGGCACTTAGAGGCGGTACCA GAGGTGGTTTGGGCAGGCGCTGCAGAATACGTACAAATAGAGGCGGCTATTTATCCTTCTGTGGCGGTTCATACGTTACA AATAGAGGCGGCTATTTATCCTCCTGGCTCTGTTTTCCGTTACTCTTAGTTGTTTGTTTCTCTTGTTGTTTTGTTCATTT TCATTTTCATTGCTGTTTAAAAGCCTTCCCTCCGTGCTTTGGCTTTTTCATTATACTTTGTCTTGTTCATGTTTCTTTTC AACTTCTGTAAATTATTTATCTAAATCAATCTTAGGTCACGTAACGTGCTGGTTAGTCTATTAATTTCGTGTCATTTTGC TGTTTTATAACCTGTGATTTTGTGATTTCAGTTTCTTCATCTACATTCTTATCTCTCTCTCTCTCTTTCTCTGTCACCCT GTTGTGCTCTCCACTCTTAGCTCTCTCCACTCAGATTTCGTTCTCATCTTATGATTTCAGTTTCTTCTCCTCTCAAATTT GGATCGAAGGTAAGCATCTCGTTCTCATCTTTTGATTTTAGTTTCCAGTAATTGTCATTACGGTACTTAGCAGGGGAATG GCTTATGATTTCACATTGTAGCAGATTTCTTCCTTTTTGGGTTTTAAAGCTGATTTTCATTAAGCAAAGGTCTAAGATAA AAATACTATATTATGTTTAAATCACACTCATCTTCTCAGTCCCACTGATTTGTTATGTTTTGTTCCCCATGGAATGAAAA TGCAGGTTCTACATCAATTAGCTCGTTGCCATTATGCGACAAACAGATTCTTTTATCCAACAATATCCTATAAGTTTTGA TAGGAAATTTTTTAACTACCTGTATCTTCATAAGTTGCATCAATGAATTCAATTTAGTTATTTGCATTTTGGATTCTGTT GGTGGTAGTGGAGTTTGTTTACTTGGAGTTTCTTTGAAGGGATTATATGCTGTTTGTTTGGGTTTTTTTGTTTGCTGTGT TGCTAAAGGGAGCTCATCAGCTGTGTACGATTACTTTTTCTCATACTATAAATTGAGTTTCTTTCTATGTTTATTTTTTA CTCTGATTCTTATTGCAGTAATAGTGGGTCAGGATGGTTTAAAGAAGAGGTCTTTCCATTTGCCTTTAACCCTTGATAAA TTGAAATATGCTGACATCAAAAGCAAGGTAAGGTTGTAATTATTTAACACTTCTCCTGCATTTCATTTTCTGCGGCTTCT TATGACTAGATTTTGTCATTATCAACATGTAATTATTTTTGGCGTCTAAATGAAGGATGAATGAGTAGCCCAAGGTTGTA GTTTCATTTACTTAAGCTGGAAAATGTAATGGTGTCATTTGGCTTGAATGATTTCAAGAACTTCTACTTTTCAATTAGGA TGCCTTTACATTGAATTTCTGGTGAGCTAGCTCAGATTTAGTGTTGAGATTTTCGGTGGATATCATTTTTACTTGTTCAT TCAATGAGCAAGTTTTTTTATCCTGATTTTACAAAGATGGAGCTTGAGCACATTTTCATTTTATGTAGGTTGTCATCCTT GCAATACAATAGTTATTAGACAAGATTGCATTTTACGTTCATTGTTCAATATAAATCAATTTCTGCGTTACTGGATTTAA TTGATGGTTATCTAATTAAGAACTGTTGTAAAATGGGTGAAAAAAATTCATTTTAGCATTTTGCGGCGCGCAGGACAGAG TTGTTTGCTGGAGCGGTCATTTTTGTAGTGTTATAAGCTGTATGTGATGTAATGAACCATCTCTTGACTGTAGAATTTGA TAAAATTTAAGCAGAAAATTACAAACTCAAACTCTAGCATCTGTTTTTGCATTAATTATTGACAAATAGGAGCATCCATC ATGAAGAAAAGGATTGAATTGAACCTTTTACCAGTCTTGTTCTTAACTTATATAAATTGTTTGAATTTCAGGCCACAGCC CACAAGCATTTTTACCTTCATTTAATTTTTATATAGTTAAAATGATCATGACATTAGATAGTGTAGAGCACTTAGGAAGC ATATTGGGATACCTTGGTGCAAAAGAAAAAGATAAGAGAAAATTAATTACCCATATTTTGGTATTAATTTTTTCTTAAAA CATAATCAGCTAATTGAAATAACTAACTTAATTAGAGAATAATATAAGCAAGACATATACTAGGATAAGTAAACACTAAT TGCATAGAACTATAGAAGATCTAAAACCAAACTCACTTTGATTCTTTCTTTAACCCTCTTTCATTAGTTTTTGAAATTCA CGTGCGTTTCACAATTTAAATCGACCCCCCATGAGTTTTTTTACCAATTAATGTAAGAGCGTTATAAAAAGATTGTCAAA GTAAGTGTTGTTAACACTTTTTTATATCGAAAAGATAAATTACATAATCTAAGGATTGAATCATGAACTTTCCCCTCCTC AACTTATATGTCCTCAGCTCTTATCACATGAGTTATCATAATATATGGTAAATTCAGTATTTTAAAATATATATTATTTT GATATATGAAATAGTATTTTTCGATGAACTAAAAGAGAAATTAGTATTTATTAACACTCTAATCACACTTTTTCCAAGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0036600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAGAAGAAGGGACTCAATTGGGTCTGCTAGGGTAGCAGTGGAAGTTGATGATGAGCCAGAAAGTCAGCAACTTGG GGCTTCTCTTGCTGATCTTCCAACCCATATCACTACTGATATTCTGCTAAGACTTCCTGTGAAGTCTATTCTCATTTGTA AATGTGTTTGTAGAAGTTTGAAAGCTATGATCTCAGACCCCCATTTTGCAAAACTTCACTTTCAGCATTCCCAATCTGGT TTCATGATTCGTGCCAAGGATAAGAAATTGTCGGGAATCATGTACCTTCTTGAGCGCGAGACTGAAAAGTTTGAAAATGA TGATGATGATAGCCAATTCTGTTGCTGTGAGAACTCTATTATGAGACCTGAATGCAACTGTCACTTTATACTTGAGCATA AAGTCAAGCTTCCTTTTCGTGGTGCCAAACTAGTTTGGGGTAATAGAGATGAAAGCAAGAAAAGAGGCAGACCAACGGGC AGAGAAAATCATTATTTTAACTTTGAGGGAGAAGATGGTAAGTTTGCTGTGGTGAACTCTTGCAATGGCTTGATTTGCTT GTGTGATAGGGAAAGAGACTATTTTGTTGTTTGCAACCCAATTACAGGTGAGTTCATACGACTTCCACAAACTAGTAGAA TTGGTAAAACTAATAAATTCAGTATCCAAGAGATATACGCTGGTTTTGGTTTCCAACCCAAAAATAATGAATATAAGGTG GTAAGAATATTGAGAGGGTTGCAGTTTTATCATGGTATTATGGCTGCTGAAGTGCACACCCTAGGGACATCAACATGGAG GAATGTTGAAGTTAATTCTATGTATTTTTACAACCTCCGATTTCCTACTTGTGTTAGTGGGGCACTTCATTGGATCGGTT CCTATCACGGGACTCTATCAATATTGTGTTTCGACTTTGAAAGCGAGAGGTTCCGGTCCTTCCCTACTCCTCCCTGTTTG TATCAAAGTTGTACTGAGAGCATAACCATGGGAGAATTGAGGGGCTCTCTTTACATATGTGATTCCTTTTCTAAGGGTAC TCCCTTTGTAATGTGGATTATGAAGGAATATGGTTTCAAAGAATCGTGGACTAAGATTTTCAGCTTTGATACTATGAGCA GTTATCGCTGGCCTTTTGGTGGATTATATTGGCCAGTAAAACACTTTAAGAATGGTTCTGCTATATTGATGTATCATTCC TACAATTTCTTTATCTACTATGAACCTGGAAAGGATGGATTCAAAATTTTTAAAGTTCGTGGGACTCAATCAAGATTTGA TGTTATTCCTCATATTCCTAGTTTTATCTCGCTGAAAGATGTTGTGAAAGGAGACAATATTGAGGTGCTGAATGTGCACT CAAGGTATGAGGAGTTCAAATTTATGGAAGAAAATGCAGATCTTTTCTTGGCTAAAGTGAACGACAAAGTGGGAATATTA TACACCATATCAACTGATGATGAAGAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0036600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRRRDSIGSARVAVEVDDEPESQQLGASLADLPTHITTDILLRLPVKSILICKCVCRSLKAMISDPHFAKLHFQHSQSG FMIRAKDKKLSGIMYLLERETEKFENDDDDSQFCCCENSIMRPECNCHFILEHKVKLPFRGAKLVWGNRDESKKRGRPTG RENHYFNFEGEDGKFAVVNSCNGLICLCDRERDYFVVCNPITGEFIRLPQTSRIGKTNKFSIQEIYAGFGFQPKNNEYKV VRILRGLQFYHGIMAAEVHTLGTSTWRNVEVNSMYFYNLRFPTCVSGALHWIGSYHGTLSILCFDFESERFRSFPTPPCL YQSCTESITMGELRGSLYICDSFSKGTPFVMWIMKEYGFKESWTKIFSFDTMSSYRWPFGGLYWPVKHFKNGSAILMYHS YNFFIYYEPGKDGFKIFKVRGTQSRFDVIPHIPSFISLKDVVKGDNIEVLNVHSRYEEFKFMEENADLFLAKVNDKVGIL YTISTDDEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1280.50
17 128 112 9.0E-8 –
ProSiteProfiles
PS50181
27 72 46 9.948
IPR001810
Pfam
PF00646
29 69 41 6.0E-7
IPR001810
SUPERFAMILY
SSF81383
30 79 50 1.83E-13
IPR036047
PANTHER
PTHR31790
32 373 342 1.2E-38 –
PANTHER
PTHR31790:SF242
32 373 342 1.2E-38 –
SMART
SM00256
33 72 40 2.7E-6
IPR001810
TIGRFAM
TIGR01640
179 400 222 2.1E-33
IPR017451
Pfam
PF07734
284 377 94 1.7E-7
IPR006527

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0036600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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