Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0041800 |
Transcript ID | LotjaGi1g1v0041800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AT hook motif DNA-binding family protein; TAIR: AT2G42940.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9SJG4|AHL16_ARATH AT-hook motif nuclear-localized protein 16; TrEMBL-Plants: tr|A0A0B2PW89|A0A0B2PW89_GLYSO Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0041800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5711379..5712319) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACTAATTGTGGTGGGGTTGGTATTACTTAACTCCATCCTAAAAGGTGATCATTCTTTTGGGGTCCTATAAAATTT ATTGTAGAAATTCAACTACTTAAGGTTCAACACAGCAGGAGAGAGTGATTTACTCTTTGTTACAGCACGTTTGCCATAGG TGATATCCTAAAGTGTCTTGTGTTTAGTGAAATGGACCAAAAGCAAGAACAAGACAAGGGGAACCCAAACATGTCTGGCA TTGGTGACACTCTAACCCATACTAAAGTCCCAAAAGTAGTTTCACCAGTTTCTTCTGCAGCAGCAGAGGGGGAAACCTTG AGGCGGCCTCGCGGCCGGCCTGCCGGCTCCAAAAACAAGCCTAAGCCACCAATAATTGTCACCAGAGACAGTGCAAATGC ACTGAAAGCTCATGCCATGGAAGTGACCTCTGGATGTGATGTGAATGAAAGCCTGTTAAACTTTGCAAGGAGAAAGCAAC GAGGTCTTTGCATCCTCAATGGGACTGGCTGTGTTACCAATGTGACATTGCGCCAGCCAGCCTCATCTGGTGCCATTGTG ACACTCCACGGTCGATTTGAGATTCTCTCACTGCTCGGATCAGTGCTTCCCCCACCAGCACCACCAGGGATCACAGGCCT TACAATTTACTTAGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTTGTTGGCGCTTTGATTGCTTCCGGCCCGGTTG TAATCATGGCTGCATCATTCATGCATGCTACATTTGATCGTCTGCCATTGGAAGATGATGAACTTGCTGCTGCAATGCAG AATCAGCATTACCAGAATGGACGCGCCCATCATCTTGATATCTCAGACTTATATGCAATGCCACAGAACCTCCTCATGAA TGGTGCAATGCCTCCAGAGATATATGCTTGGGCACCGGGGCGGAACTTGTCAAAATCCTGA
CDS sequence (LotjaGi1g1v0041800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAAAAGCAAGAACAAGACAAGGGGAACCCAAACATGTCTGGCATTGGTGACACTCTAACCCATACTAAAGTCCC AAAAGTAGTTTCACCAGTTTCTTCTGCAGCAGCAGAGGGGGAAACCTTGAGGCGGCCTCGCGGCCGGCCTGCCGGCTCCA AAAACAAGCCTAAGCCACCAATAATTGTCACCAGAGACAGTGCAAATGCACTGAAAGCTCATGCCATGGAAGTGACCTCT GGATGTGATGTGAATGAAAGCCTGTTAAACTTTGCAAGGAGAAAGCAACGAGGTCTTTGCATCCTCAATGGGACTGGCTG TGTTACCAATGTGACATTGCGCCAGCCAGCCTCATCTGGTGCCATTGTGACACTCCACGGTCGATTTGAGATTCTCTCAC TGCTCGGATCAGTGCTTCCCCCACCAGCACCACCAGGGATCACAGGCCTTACAATTTACTTAGCAGGTGCTCAAGGGCAA GTTGTGGGAGGTGCTGTTGTTGGCGCTTTGATTGCTTCCGGCCCGGTTGTAATCATGGCTGCATCATTCATGCATGCTAC ATTTGATCGTCTGCCATTGGAAGATGATGAACTTGCTGCTGCAATGCAGAATCAGCATTACCAGAATGGACGCGCCCATC ATCTTGATATCTCAGACTTATATGCAATGCCACAGAACCTCCTCATGAATGGTGCAATGCCTCCAGAGATATATGCTTGG GCACCGGGGCGGAACTTGTCAAAATCCTGA
Protein sequence (LotjaGi1g1v0041800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQKQEQDKGNPNMSGIGDTLTHTKVPKVVSPVSSAAAEGETLRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVTS GCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSVLPPPAPPGITGLTIYLAGAQGQ VVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRAHHLDISDLYAMPQNLLMNGAMPPEIYAW APGRNLSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 61 | 61 | - | – | |
PIRSF | 1 | 243 | 243 | 1.7E-99 | ||
PANTHER | 27 | 246 | 220 | 2.5E-100 | – | |
PANTHER | 27 | 246 | 220 | 2.5E-100 | ||
SUPERFAMILY | 68 | 200 | 133 | 7.85E-33 | – | |
ProSiteProfiles | 68 | 206 | 139 | 37.606 | ||
Gene3D | 71 | 207 | 137 | 7.9E-10 | – | |
Pfam | 73 | 183 | 111 | 3.3E-26 | ||
CDD | 74 | 154 | 81 | 3.14951E-21 | ||
TMHMM | 161 | 183 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi1g1v0041800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…