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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0046500 |
Transcript ID | LotjaGi1g1v0046500.7 |
Related isoforms 8 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6344668..6348119) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGTGTGGAGGATGAAGAACCAGCTTTGAAACGGATGAAATTGTCCTCGAAAGGATTAGTTGGATTGTCGAACGG TTCGTCTTCTGTGGAGCCTGTTGGGGGCTTCTTGAGTGATTCGATGGCTCGGCCCCTACCGTCCCATGGGGACGAACAAG TCGTCGGTTCCAAAGGGGTGATCAAGAGGGATGAGTTTGTCAGGATAATTGCGAAGGCGTTGTATTCTCTTGGTTACAGA AAGAGTGGAGCTCATCTAGAGGAGGAGTCAGGAATACCTTTGCACTCACCTGGGGTGAATATGTTCATACAGCAGATACT GGATGGGAATTGGGATGACAGCATAGCTACATTGCACACAGTTGGTCTGGCCGATGAAAGCGTTGTTAGGTCGGCTTCAT TCTTAATATTGGAACAGAAATTCTTTGAACTTTTACATGCGGAAAAGGTCATGGAAGCATTGAAGACCTTGAGGACAGAG ATTTCTCCACTTAGTGTTTATAGCAATAGAATTCGTGAACTTTCTTCTTGCATAGTGTCTCCATCTCCTAAGCAAGATAT TTTAGAGGTGAGGTCTCGGTCGAAGCTTTTGGAGCAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGA GGTTGGAACATCTGGTTGAACAAGCCCTCATCCTGCAACGGGAGGCTTGCCTATTTCACAACTCATTGGATAAGGAGATG TCATTGTATTCAGATCATCATTGTGGAAAAGATCAAATACCTTCTAAAACATTACAGGTTAGTAAATGATATGTCTAGTA GATATTTAGTAAACACATGCCTGCTGGTCATTTGAATTGAAATAATTAGTAGTGATATAACTACACAAAATCTTGTCTTG GATGAAATAATAGTTAATGTGCATGTGCAAGTGCTTGGCATCTCAAAAAAGAGTACGTTGGAATGGTCACAAGTCATTGT ATCTATTTTTGGTTTCCTAAATCTTGATTCTTGAAGGAGCTTTTCAGTCAAAATGAGTTCACATTTTGCTAATGCAGTGG CTTGATATTTTTCTTTTGCACTTGTCCTGTAAATATCCTACTTCTTACTCTTCGAGTGTTCAGGGTTTCCTCCATTAAGA AAATAACCTTAACAATATATATGAAATTACAAAACCCGATATGATTGGGTTTGGGTTTGGTATTGGTGAAACCCGGACCC GAACCCGAACAATATATATGAAATTACAAAACTACTCTTATATATACCATATTAACAACTTTATTTGTTAACTATTTGAT CATCTTTGAACAACAAGACACCATATTCTTTTGCAAAAAAGATATTAAAGGTTTTTTCACAACAAAGTAATATAAGTTGT GTTTTCTTTGGCAAAAAAGTCTATGCATCAAATTAGGTTTGAACGTGACGGGTTTGGGTTTGGGAAAGGCAAAACCCGAG CCCGACCCGTTGCCATCCGTGTTCATGATTTACCTGCCTTTACTTTCTATGTAACTTGAGTGGTATCTATATTCCAATGT CCTACTCGAATTGCAACAGATATTAGAAGCACATGATGATGAAGTCTGGCTTGTACAATTTTCACATAATGGGAAATATT TAGCTTCAGCATCAAATGATCGAACTGCAATCATTTGGGAGGTAATATTTGATATTGAGCTGATACTTTCCATTTTGTCT TCTCTGTCCTCTTTCAGTCTTTTTCTTTTCTTATCTAATGTTTTTTTGCTTGTGTTCTGATTTTATCATCATAGTCTAAA TCCAATTCTCAGTTGTATTTTTTTTCCTTCAAATCAATGTCTTATGAGCTCATTCATCAATGCACGAAAATTGCATGCTC ACACATGAGTGCACACACAATATGGCAAAATATTACGAAATGAGATTTTAGATTTTAATTTGGGTTGTTCTTTTAAAGGT TGGCATAAATGGACTGTCTTTAAAGCATAGATTATCTGGTCACCAGAAAGCTTTTTCTTCTATTTCATGGAGTCCTAATG ACCAAGAGCTCCTCACATGTGGAGTGGAGGAAGCTATTAGGCGTTGGGATGTTTCTACCGGCAAGTGCCTTCAAATTTAT GAAAAAGCTGGTGCAGGCCTTATCTCCTGTACATGGTTTCCAAGTGGGAAGTATATACTTTCGGGCTTAAGTGATAAGAG TATTTGCATGTGGGAATTAGATGGGAAGGAAGTCGAGTCTTGGAAAGGACCAAAAACCCTTAAGATTTCTGATTTGGAGA TAACAGATGATGGGAAAGAGATTCTAAGTATTTGCAAAACCAATACTATACTGTTGTTCAATAGAGAAACAAAAGATGAG AGATTTATTGAAGAGTATCAGACAATAACCTCTTATTCTTTATCAAAGGATAACAAGTTCTTGCTGGTCAATCTTTTGAA CCAAGAAATACATCTTTGGAACATCGAAGGTAATCCTAAGCTTGTTGCGAAGTACAAAGGTCATAGACGTGCCAGGTTTC TGATCAGGTCTTGCTTTGGTGGACTGCATCAAGCTTTTATTGCTAGTGGAAGTGAGGATTCACAGGTATGAATCTTTAAT AATTGATAAGAATCAAAAAACATTTTTGAATTAATATATATACTTCTATAATAGATTTTTTCTCACCTATCACCTCTCAT AATTATAATTGTTTATAATTTGCAAATAAAATTCTTTTGGCATTTGTATGTTTTTTTCTCGTACCATTAAACAACATGCT TCTAAATCTGAGTTTTGGTTATATGAGATGCATGAACTTGTGCTTTCTGTTTTGGTTGATATATTGGATGTCTTTATAAT ATTCGTACTAGGAATTCAACTACAACTAGGAGCATCTTGGTAATTTTACATTTCTGCTTGCTATGCTATGTAGTTAAATC AATCGGTGCTCCCTTTTTGATCTGTTTCTTCTCTTCAGTTTGCCACCTTTTGATAGCGCCCAAGAAAACCATGTTCACTA GTTTCTAGTTGTGATGTTTATAGCATGTGTGAATCAACTTCTCTTTCCCTAAAATCAATTTCGATATTCAGAAGCTAACC ACAGAGGCTTCCCCCTGAACTGATGCTCTGCCCGTGAAGCTTCTTTCATTTGTATGTGAAACAATCCCATGCAAAAATCT ACCTAACTTCTTATGATAGTGCAATCTACATAACTTCTCATGATAGTCCATTCTATTGCATAAACGTGGGCAATTATCAA ACTTAGATCTTTTACATTCCAATTTGTAGGTTTACATATGGCAGAGGTGCTCGGGAGAGCTAATAGAGGCATTGCCTGGT CATTCAGGAGCAGTGAATTGTGTGAGCTGGAATCCAGCTAACCCTCACATGTTGGCCTCGGCCAGTGATGACCGGACAAT TCGGATATGGGGCCTTAATTGTATGAATAAGAACTATCAGAAGAATGTGCACTGCAATGGTGTCCATTACTGCAATGGAT CGACCTAGATGA
CDS sequence (LotjaGi1g1v0046500.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGTGGAGGATGAAGAACCAGCTTTGAAACGGATGAAATTGTCCTCGAAAGGATTAGTTGGATTGTCGAACGG TTCGTCTTCTGTGGAGCCTGTTGGGGGCTTCTTGAGTGATTCGATGGCTCGGCCCCTACCGTCCCATGGGGACGAACAAG TCGTCGGTTCCAAAGGGGTGATCAAGAGGGATGAGTTTGTCAGGATAATTGCGAAGGCGTTGTATTCTCTTGGTTACAGA AAGAGTGGAGCTCATCTAGAGGAGGAGTCAGGAATACCTTTGCACTCACCTGGGGTGAATATGTTCATACAGCAGATACT GGATGGGAATTGGGATGACAGCATAGCTACATTGCACACAGTTGGTCTGGCCGATGAAAGCGTTGTTAGGTCGGCTTCAT TCTTAATATTGGAACAGAAATTCTTTGAACTTTTACATGCGGAAAAGGTCATGGAAGCATTGAAGACCTTGAGGACAGAG ATTTCTCCACTTAGTGTTTATAGCAATAGAATTCGTGAACTTTCTTCTTGCATAGTGTCTCCATCTCCTAAGCAAGATAT TTTAGAGGTGAGGTCTCGGTCGAAGCTTTTGGAGCAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGA GGTTGGAACATCTGGTTGAACAAGCCCTCATCCTGCAACGGGAGGCTTGCCTATTTCACAACTCATTGGATAAGGAGATG TCATTGTATTCAGATCATCATTGTGGAAAAGATCAAATACCTTCTAAAACATTACAGATATTAGAAGCACATGATGATGA AGTCTGGCTTGTACAATTTTCACATAATGGGAAATATTTAGCTTCAGCATCAAATGATCGAACTGCAATCATTTGGGAGG TTGGCATAAATGGACTGTCTTTAAAGCATAGATTATCTGGTCACCAGAAAGCTTTTTCTTCTATTTCATGGAGTCCTAAT GACCAAGAGCTCCTCACATGTGGAGTGGAGGAAGCTATTAGGCGTTGGGATGTTTCTACCGGCAAGTGCCTTCAAATTTA TGAAAAAGCTGGTGCAGGCCTTATCTCCTGTACATGGTTTCCAAGTGGGAAGTATATACTTTCGGGCTTAAGTGATAAGA GTATTTGCATGTGGGAATTAGATGGGAAGGAAGTCGAGTCTTGGAAAGGACCAAAAACCCTTAAGATTTCTGATTTGGAG ATAACAGATGATGGGAAAGAGATTCTAAGTATTTGCAAAACCAATACTATACTGTTGTTCAATAGAGAAACAAAAGATGA GAGATTTATTGAAGAGTATCAGACAATAACCTCTTATTCTTTATCAAAGGATAACAAGTTCTTGCTGGTCAATCTTTTGA ACCAAGAAATACATCTTTGGAACATCGAAGGTAATCCTAAGCTTGTTGCGAAGTACAAAGGTCATAGACGTGCCAGGTTT CTGATCAGGTCTTGCTTTGGTGGACTGCATCAAGCTTTTATTGCTAGTGGAAGTGAGGATTCACAGGTTTACATATGGCA GAGGTGCTCGGGAGAGCTAATAGAGGCATTGCCTGGTCATTCAGGAGCAGTGAATTGTGTGAGCTGGAATCCAGCTAACC CTCACATGTTGGCCTCGGCCAGTGATGACCGGACAATTCGGATATGGGGCCTTAATTGTATGAATAAGAACTATCAGAAG AATGTGCACTGCAATGGTGTCCATTACTGCAATGGATCGACCTAG
Protein sequence (LotjaGi1g1v0046500.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGVEDEEPALKRMKLSSKGLVGLSNGSSSVEPVGGFLSDSMARPLPSHGDEQVVGSKGVIKRDEFVRIIAKALYSLGYR KSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTE ISPLSVYSNRIRELSSCIVSPSPKQDILEVRSRSKLLEQLQKLLPPTVMIPEKRLEHLVEQALILQREACLFHNSLDKEM SLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTAIIWEVGINGLSLKHRLSGHQKAFSSISWSPN DQELLTCGVEEAIRRWDVSTGKCLQIYEKAGAGLISCTWFPSGKYILSGLSDKSICMWELDGKEVESWKGPKTLKISDLE ITDDGKEILSICKTNTILLFNRETKDERFIEEYQTITSYSLSKDNKFLLVNLLNQEIHLWNIEGNPKLVAKYKGHRRARF LIRSCFGGLHQAFIASGSEDSQVYIWQRCSGELIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLNCMNKNYQK NVHCNGVHYCNGST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 569 | 569 | 0.0 | – | |
PANTHER | 1 | 569 | 569 | 0.0 | – | |
ProSiteProfiles | 62 | 94 | 33 | 8.078 | ||
ProSiteProfiles | 95 | 152 | 58 | 10.072 | ||
SMART | 95 | 152 | 58 | 2.5E-5 | ||
Gene3D | 249 | 552 | 304 | 8.3E-69 | ||
SUPERFAMILY | 252 | 549 | 298 | 4.89E-66 | ||
SMART | 254 | 293 | 40 | 1.2E-8 | ||
Pfam | 256 | 292 | 37 | 2.6E-4 | ||
CDD | 258 | 549 | 292 | 6.18854E-51 | – | |
ProSiteProfiles | 261 | 294 | 34 | 13.115 | ||
ProSiteProfiles | 261 | 559 | 299 | 39.838 | ||
PRINTS | 280 | 294 | 15 | 2.6E-5 | ||
ProSitePatterns | 280 | 294 | 15 | - | ||
SMART | 298 | 337 | 40 | 1.1E-4 | ||
ProSiteProfiles | 305 | 346 | 42 | 13.817 | ||
SMART | 340 | 379 | 40 | 3.1E-4 | ||
Pfam | 341 | 378 | 38 | 0.0034 | ||
ProSitePatterns | 366 | 380 | 15 | - | ||
SMART | 381 | 421 | 41 | 8.8 | ||
SMART | 426 | 461 | 36 | 360.0 | ||
SMART | 465 | 507 | 43 | 1.2 | ||
Pfam | 468 | 506 | 39 | 0.066 | ||
PRINTS | 494 | 508 | 15 | 2.6E-5 | ||
SMART | 510 | 550 | 41 | 4.1E-11 | ||
Pfam | 514 | 549 | 36 | 2.0E-7 | ||
ProSiteProfiles | 517 | 552 | 36 | 14.251 | ||
PRINTS | 537 | 551 | 15 | 2.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0046500.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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