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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0046500 |
| Transcript ID | LotjaGi1g1v0046500.9 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6350520..6354340) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGTGTGGAGGATGAAGAACCAGCTTTGAAACGGATGAAATTGTCCTCGAAAGGATTAGTTGGATTGTCGAACGG TTCGTCTTCTGTAGAGCTGGTTGGGGGCTTCTTGAGTGATTCGATGGCTCGGCCCCTACCGTCCCATGGGGACGAACAAG TCGTCGGTTCCAAAGGGGTGATCAAGAGGGATGAGTTTGTCAGGATAATTGCGAAGGCGTTGTATTCTCTTGGTTACAGA AAGAGTGGAGCTCATCTAGAGGAGGAGTCGGGAATACCTTTGCACTCACCTGGGGTGAATATGTTCATACAGCAGATACT GGATGGGAATTGGGATGACAGCATAGCTACATTGCACAAAGTTGGTCTGGCCGATGAAAGCGTTGTTAGGTCGGCTTCAT TTTTAATATTGGAACAGAAATTCTTTGAACTTTTACATGCGGAAAAGGTCATGGAAGCGTTGAAGACCTTGAGGACAGAG ATTTCTCCACTTAGCGTTTATAGCAATAGAGTTCGTGAACTTTCTTCTTGCATGGTGTCTCCATCTCCTAAGCAAGATAT TTTAAAGGTGAGGTCTCGGTCGAAGCTTCTGGAGCAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGA GGTTGGAACATCTGGTTGAACAAGCCCTCATCCTGCAACGGGAGGCTTGCCCATTTCACAACTCATTGGATAAGGAGATG TCATTGTATTCAGATCATCATTGCGGAAAAGATCAAATACCTTCTAAAACATTACAGGTTAGAAAATGATATGTCTAGTA GATGTTTAGTAAAACATGCCTGCTGGTCATTTGAATTGAAAAATTAGTAGTGATATAACTACACAAAATCTTGTCTTGGA TGAAATAATAGTTAATGTGCATGTGCTTGGTATCTCAAAAAAGAGTACGTTGGAATGGTCACAAGTCATTGTATCTATTT TTGGTTTTGCAAATCTTGATTCTTGAAGGAGCTTTTCAGTCAAAATGAGTTCACATTTTGCTAATGCAGTGGTTTGATAT ATTTTTTTTGCGCTTGTCCTGGAAATATCCTACTTCTTACTCTTCGAGTGTTCTGAGTTTCCTCCATTAAGAAAATAACC TTAAAGTAGAATTTCTTTTCGATGCAAGCATATGCCCATTTACACGAGTGTGCCCTCGATCTTCATATAGAAATCCATGG TTGAGTGGTCCTAACTCCTAACTATAATATATTTCAGGATCTAGACAATGTCCCAGTGAATAACTAAACATATTTTAGGA ACTAGGGATCTTATTTACTTCAAAAGGTATATCTGGTCAAGCTACCATCCCTATGGATAACATGCTACCATAGTACCATC ACTATTTCAATTTACAACTGCTCTACTTATAACGCCGTCACTTTTACTTATCATAACGCACTTCCTTTCTTGAAAAATAA GATTCACGTATCATCAATTGAATTCAAGGGTAAATTACATAGGTTTAATATTTATAATCTGATTTCTTTTCAAAACCAAA ACCGCCTGAATCCGACCCGATTTTACTGGTTAAACCCGATATGATTGGGGTTGGGTTTGGTATTGGTGAAACCCGCACCC GAACCCGAACAATATATAAGAAATTACAAAACTACTCTTATATATACCATATTAACAACTAGATTTGTCAACTATTTGAA CAACAAGACACCATTCTTTTGCAAAAAATATATTAAAGGTTTTTTCACAACAAGGTAATATAAGTTGTGTTTTCTTTTGC AAAAAAGTCTATGCATCAAGTTAGGTTTGAACATGACGGGTTTGGGTTTGGGAAAGGCAAAACCCGAGCCCGACCCATTG CCATCCCTGTTCATGATTTACCTGCCTTTACTTTCTATGTAACTTGAGTGGCATCTATATTCCAATGTTATTTTCATTTC CTACTCGTATTGTAACAGATATTAGAAGCACATGATGATGAAGTCTGGCTTGTACAATTTTCACATAATGGGAAATATTT AGCTTCAGCATCAAATGATCGAACTGCAATCATTTGGGAGGTAATATTTGATATTGAGCTGATACTTTCCATTTTGTCTT CTCTGTCCTCTTTCAGTCTTTTTCTTTTCTTATCTAATGTTTTTTTGCTTGTGTTCTGATTTTATCATCATAGTCTAAAT CCAATTCTCAGTTGTATTTTTTTCCTTCAAATCAATGTCTTATGAGCTCACTCATCAATGCACGAAATTGCATGCTCACA CATGAGTGCACACACAATAAGGCAAAATATTACGAAATGAGGTTTTAGATTTTAATTTGGGTTGTTCTTTTAAAGGTTGG CATAAATGGACTGTCTTTAAAGCATAGATTATCTGGTCACCAGAAAGCTTTTTCTTCTATTTCATGGAGTCCTAATGACC AAGAGCTCCTCACATGTGGAGTGGAGGAAGTTATTAGGCGTTGGGATGTTTCTACCGGCAAGTGCCTTCAAATTTATGAA AAAGCTGGTGCAGGCCTTGTCTCCTGTACATGGTTTCCAAGTGGGAAGTATATACTTTCGGGCTTAAGTGATAAGAGTAT CTGCATGTGGGAATTAGATGGGAAGGAAGTCGAGTCTTGGAAAGGACCAAAAACCCTTAAGATTTCTGATTTGGAGATAA CAGATGATGGGAAAGAGATTCTAAGTATTTGCAAAACCAATACTATACTGTTGTTCAACAGAGAAACAAAAGATGAGAGA TTTATTGAAGAGTATCAGACAATAACCTCTTTTTCTTTATCAAAGGATAACAAGTTCTTGCTGGTCAATCTTTTGAACCA AGAAATACATCTTTGGAACATTGAAGGTAATCCTAAGCTTGTTGTGAAGTACAAAGGTCATAGACGTGCCAGGTTTCTTA TCAGGTCTTGCTTTGGTGGACTGCATCAAGCTTTTATTGCTGGTGGAAGTGAGGATTCACAGGTATGAATCTTTAATAGT TGATAAGAATCAAAAAACATTTTTGAATTAATATATACACTTCTATAATAGATTTTTTTCTCGCCTATCACCTCTCATAA TTATAGTTGTTTATAATTGCTAAAGTAAAATTCTTTTGGCATTTGTTTGTTTTTGTCTCGTACCATTAAACAACATGCTT CTAAATCTGAGTTTTGGTTATATGAGATGCATGAACTTGTGCTTTCTGTTTTTGTTGATATATTGAATGTCATTATAATA TTCCTACTACGAATTCAACTACAATTCTGCTTGCTATGCTGTGTAGTGAAATCAATCGGTGCTCCCTTTTTTTCTGTTTC TTCTCTTCAGTTTGCCACCTTTTGATAGCTCCTAAGAAAACCATGTTTACTAGTTTCTAGCTGTGATGTTTATAGCATGT TTGAATCAACTTCTCTTTTCTTAAAATCAATTCTGAAACTCAGAAGCTAACCACAGAAGCTTCCCCCTGAACTGATGCTC TGCCCGTGAAGCTTCTTTCATTTGTATGTGAAACAATCCCATGCAAAAATCTACTTAACTTCTTATGATAGTGCAATCTA CATAATTTCTTATGATAGTCCATTCTATTGCATAAACGTGGGCAATTATCAAACTTAGATCTTTTACATTCCAATTTTGC AGGTTTACATATGGCAGAGGTGCTCAGGAGAGCTAATAGAGGCATTGCCTGGTCATTCAGGAGCTGTGAATTGTGTGAGC TGGAATCCAGCTAACCCTCACATGTTGGCCTCGGCCAGTGATGACCGGACAATTCGGATATGGGGCCTGAATTGTGTGAA TAAGAACTATCAGAAGAATGCGCACAGCAATGGCGTCCATTACTGCAATGGATCAACCTAG
CDS sequence (LotjaGi1g1v0046500.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGTGGAGGATGAAGAACCAGCTTTGAAACGGATGAAATTGTCCTCGAAAGGATTAGTTGGATTGTCGAACGG TTCGTCTTCTGTAGAGCTGGTTGGGGGCTTCTTGAGTGATTCGATGGCTCGGCCCCTACCGTCCCATGGGGACGAACAAG TCGTCGGTTCCAAAGGGGTGATCAAGAGGGATGAGTTTGTCAGGATAATTGCGAAGGCGTTGTATTCTCTTGGTTACAGA AAGAGTGGAGCTCATCTAGAGGAGGAGTCGGGAATACCTTTGCACTCACCTGGGGTGAATATGTTCATACAGCAGATACT GGATGGGAATTGGGATGACAGCATAGCTACATTGCACAAAGTTGGTCTGGCCGATGAAAGCGTTGTTAGGTCGGCTTCAT TTTTAATATTGGAACAGAAATTCTTTGAACTTTTACATGCGGAAAAGGTCATGGAAGCGTTGAAGACCTTGAGGACAGAG ATTTCTCCACTTAGCGTTTATAGCAATAGAGTTCGTGAACTTTCTTCTTGCATGGTGTCTCCATCTCCTAAGCAAGATAT TTTAAAGGTGAGGTCTCGGTCGAAGCTTCTGGAGCAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGA GGTTGGAACATCTGGTTGAACAAGCCCTCATCCTGCAACGGGAGGCTTGCCCATTTCACAACTCATTGGATAAGGAGATG TCATTGTATTCAGATCATCATTGCGGAAAAGATCAAATACCTTCTAAAACATTACAGATATTAGAAGCACATGATGATGA AGTCTGGCTTGTACAATTTTCACATAATGGGAAATATTTAGCTTCAGCATCAAATGATCGAACTGCAATCATTTGGGAGG TTGGCATAAATGGACTGTCTTTAAAGCATAGATTATCTGGTCACCAGAAAGCTTTTTCTTCTATTTCATGGAGTCCTAAT GACCAAGAGCTCCTCACATGTGGAGTGGAGGAAGTTATTAGGCGTTGGGATGTTTCTACCGGCAAGTGCCTTCAAATTTA TGAAAAAGCTGGTGCAGGCCTTGTCTCCTGTACATGGTTTCCAAGTGGGAAGTATATACTTTCGGGCTTAAGTGATAAGA GTATCTGCATGTGGGAATTAGATGGGAAGGAAGTCGAGTCTTGGAAAGGACCAAAAACCCTTAAGATTTCTGATTTGGAG ATAACAGATGATGGGAAAGAGATTCTAAGTATTTGCAAAACCAATACTATACTGTTGTTCAACAGAGAAACAAAAGATGA GAGATTTATTGAAGAGTATCAGACAATAACCTCTTTTTCTTTATCAAAGGATAACAAGTTCTTGCTGGTCAATCTTTTGA ACCAAGAAATACATCTTTGGAACATTGAAGGTAATCCTAAGCTTGTTGTGAAGTACAAAGGTCATAGACGTGCCAGGTTT CTTATCAGGTCTTGCTTTGGTGGACTGCATCAAGCTTTTATTGCTGGTGGAAGTGAGGATTCACAGGTTTACATATGGCA GAGGTGCTCAGGAGAGCTAATAGAGGCATTGCCTGGTCATTCAGGAGCTGTGAATTGTGTGAGCTGGAATCCAGCTAACC CTCACATGTTGGCCTCGGCCAGTGATGACCGGACAATTCGGATATGGGGCCTGAATTGTGTGAATAAGAACTATCAGAAG AATGCGCACAGCAATGGCGTCCATTACTGCAATGGATCAACCTAG
Protein sequence (LotjaGi1g1v0046500.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGVEDEEPALKRMKLSSKGLVGLSNGSSSVELVGGFLSDSMARPLPSHGDEQVVGSKGVIKRDEFVRIIAKALYSLGYR KSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHKVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTE ISPLSVYSNRVRELSSCMVSPSPKQDILKVRSRSKLLEQLQKLLPPTVMIPEKRLEHLVEQALILQREACPFHNSLDKEM SLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTAIIWEVGINGLSLKHRLSGHQKAFSSISWSPN DQELLTCGVEEVIRRWDVSTGKCLQIYEKAGAGLVSCTWFPSGKYILSGLSDKSICMWELDGKEVESWKGPKTLKISDLE ITDDGKEILSICKTNTILLFNRETKDERFIEEYQTITSFSLSKDNKFLLVNLLNQEIHLWNIEGNPKLVVKYKGHRRARF LIRSCFGGLHQAFIAGGSEDSQVYIWQRCSGELIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLNCVNKNYQK NAHSNGVHYCNGST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 569 | 569 | 0.0 | – | |
| PANTHER | 1 | 569 | 569 | 0.0 | – | |
| ProSiteProfiles | 62 | 94 | 33 | 8.078 | ||
| ProSiteProfiles | 95 | 152 | 58 | 10.027 | ||
| SMART | 95 | 152 | 58 | 3.3E-5 | ||
| Gene3D | 249 | 512 | 264 | 9.6E-59 | ||
| SUPERFAMILY | 252 | 549 | 298 | 5.5E-65 | ||
| SMART | 254 | 293 | 40 | 1.2E-8 | ||
| Pfam | 256 | 292 | 37 | 2.6E-4 | ||
| CDD | 258 | 549 | 292 | 3.30608E-50 | – | |
| ProSiteProfiles | 261 | 574 | 314 | 39.074 | ||
| ProSiteProfiles | 261 | 294 | 34 | 13.115 | ||
| ProSitePatterns | 280 | 294 | 15 | - | ||
| PRINTS | 280 | 294 | 15 | 3.9E-5 | ||
| SMART | 298 | 337 | 40 | 3.9E-5 | ||
| Pfam | 302 | 337 | 36 | 0.22 | ||
| ProSiteProfiles | 305 | 346 | 42 | 13.683 | ||
| SMART | 340 | 379 | 40 | 2.5E-4 | ||
| Pfam | 341 | 378 | 38 | 0.002 | ||
| ProSitePatterns | 366 | 380 | 15 | - | ||
| PRINTS | 366 | 380 | 15 | 3.9E-5 | ||
| SMART | 381 | 421 | 41 | 8.8 | ||
| SMART | 426 | 461 | 36 | 24.0 | ||
| SMART | 465 | 507 | 43 | 16.0 | ||
| SMART | 510 | 550 | 41 | 4.1E-11 | ||
| Gene3D | 513 | 571 | 59 | 2.0E-11 | ||
| Pfam | 514 | 549 | 36 | 2.0E-7 | ||
| ProSiteProfiles | 517 | 552 | 36 | 14.251 | ||
| PRINTS | 537 | 551 | 15 | 3.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0046500.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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