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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0051800 |
| Transcript ID | LotjaGi1g1v0051800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|G7KCW0|G7KCW0_MEDTR Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7322236..7327313) extracted from Lotus japonicus Gifu genome v1.2.
AATTTTAAATAAAAAAAATAACTTATCTACTGAAAGTATACCAAATTGGTACCAAAACGTGGCAGTTAGCCAGTAGCCGC CACAGTTGAATGACAAACTGGTTTCAACATCGAATATAGAAAGAAAGAAAGAGTGAGCTCCAACTGAAGCAGCATAGCGT TTGAAAATGCAGTTCACCTCACAACTCCTTCTTCTTCATTCCTTCTTCTTCTTCTTTCTCATCACTTCATCCTCTTCATC ACTTTCACAATCCAACCAGGTTCTCTTCCACTTTCTCTTCTCAGTTGACTTTCACTCAAACCAAATCACTTTCTTCCAAT TTTTCAACCATTTACAAAAACCAATTCGATTACTCAGTTCAAGTGTTTATTTGTTTGTTTACTCAATTGAACTCATCTTC TTCTGTTTGCATGATTCAGTTCTGTGAAGCTGGAATTGCAGAATCAGCATGTGGAACTGGAATCCCATCATCATCCAAAT TGTTGATCAAAGGTGGCACCGTCGTCAACGCTCACCACCAACACGTTGCTGATGTCTACGTAGAGGATGGCATCATCGTA GCCGTTGACCCCGATATCAACGTTGGAGATGATGTGAATGTCATAGATGCCACTGGCAAGTTCGTCATGCCAGGTTAGTG AGAAAGAATGCAATAGATGAAGGACCTGTTGTGTTGAGTGTAAATATATCTATATATATATATATATATGTGAATGTCAT AGATGGTTACAAAGGATATATAAAAACAAATTGAGAGAAGTAATTCCTCTTTTGTGAGTGTATTTGTTCTTCTCAACTTC TCTTTTTGTTTATGGATATTTGTCTTTATGAGGTTTCAAATTGTTAAGCTTGAGAGCACAAGTTCAGTAGTGTTGTGTTA CACTTGGGAAGTATGACCGGTTATCAGGTTCCACCATTGGCCTGCCGGAATTCTTACTTTTAAGGCAGTGAACTGCTATG AGATATTGGTCATTTCATCTTCTATTTTTATTCCCAACACTCCATTGTCAATGTTTTAGTCTTCCTCCTCTTTTTTTCCT GGCCTGTGTTTTTTTTATGGTCTCTTGGTATGAGACTGTACTAATCCAATTTGGGGTATTGTACTAAGGCTCATTGTTGA TTTTTTCAACCTACTACTACTACTACCTCTACATTACCTGACTAATTGTATGAATGCATCTTTTTAACCGATAGGAGGAA TTGATCCTCACACCCACCTAGCGATAGAGGGTTTGGATATTACATCAGTAGATGACTTCTTCAGTGGTCAGGCTGCAGCA TTAGCTGGTGGGACAACGATGCACATTGATTTCATTATACCATCTAATGGGAATTTATCAGCTGCTTTTGATGTCTATGA AAAGAAGGCAAAGAAGTCTTGCATGGACTATGGTTTCCACGTGGCTATAACCAAATGGGATGAAGGTGTTTCAAGAGATA TGGAGCTCATGGTCAAGGAGAAAGGTCATAATTTATTTCCTTGCTGTGTATTAATAACTTGGTTGATTATGCAGTAATAA CTCTTTGGATGAGTTCCGAGGAAGTTCTTTCAGGCAATACACTAATGTTTTTTAATCACAGGTATCAACTCTTTTAAGTT TTTCATGGCATACAAAGGAATTGTCATGGTCAATGATGAGCTCCTTCTCAAAGGATTCAAGAAGTGCAAGTCCCTTGGTG CCTTAGCCATGGTCCATGCAGAAAATGGAGATGCAGTATATGAAGGGCAAAAGAAAATGATAGAACTTGGAATAACTGGT CCCGAGGGGCATCCTCTTTCAAGGCCTGCAGCGGTAAGTTCTCTTTTTTTCCCTCTTCTATAAAGAATCTGGAAAATAGT CAATAGTGGAATGCAAGAGAATAATGGAATACAAATACTAATTGACCTCATCTGGTTTCTGTGAAGTCTTATTATCTGTC TGTGTGTGATTCTAGAAATTTTCCGCACTTGACTTGGGTTCCTGTGTAGTTGGAAGGAGAGGCAACTTCTCGTGCTATTC GCTTAGCAGATTTTATCAACACTCCTTTGTATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAATTGCCAAGGCC CGAAAATCAGGTTCTTAACTGCATTCTTTTAGTGTTATTCTTAATTTTCATCAATGTGTTCTGCAGTAACTATGCATTTT TTTTAGAAAAACTAATATTTGCACAACATTTTTTAGGGGAAAAATGAAAAAAAGAGTTCAAGCATATACTGTAGTTCAAT ATTATATCTACTTTGTCCTAAGCGCATAAACTCTGTGCAACTTAAATCACTTGAACTTAATTCTTATTACTGTTAGTGAT GCGATGGGGTTCCCTGCTTGTTTTAACATGCAGGACAAAGGGTAATTGGAGAGCCTATTGTCTCTGGGTTAGCCCTTGAT GACTCTTGGCTTTGGCATCCAGACTTTGAGACTGCAGCAAAGCAAGTGCCACTTGTTTCATAGTTTTTTTAAGTTGCTAC ACTTTTTTCACCTTAAGTTTTAAGAATGTAAGCTGTATTCACTTTCATGTTTCAGGTATGTCATGAGTCCTCCTATTAGG AGACTAGGACATGATAAAGCCCTTCAAGCTGCCCTTGCATCAGGAGTTTTGCAGGTTTAACATTTGAGTTATTTAGGTTC TGTAGTCTTTTAAAGATAGGGGTTTGAAGCAGGGATGTTTACAGGAATTTACTATCAAATGGGACAAAACTCTTAGTGTA AATATTAGATTTGTCATGCATTTATCGAAGTGAGCACAATGTTGCTTCTAGTCATATATTCCATCTATATGATTGAGTTA GTGTCAAGTTTTTCAACAAAGAACTGAATTTTTCACACCATGGTTCTTAAATCTTCCAAGTCTTTTGCCTTGGATTGTTT AAGATTCTGTAGACCTGTAGTGTACTTATCCACTAAGCTTCCTTTTTAAATTTTCTCCTGCTACCAATTTGTGTCTCTTA ATTTTAGAATAAATTATATTCTAAACTCATGTATTATCCTATAAAAGACAAACTTATCAACCCAAAATCAGTATTTTGAA TTTTAAAACTATATGACCTCATAAAACATAAATAGTATTGTAGAGGCTACTTTTATTTTACATTAAAATTATACTACCAA GAATAGACAATGGATCCTACACTGAGGGGGGACCAAGGCTCCTGCTTTTCCCACCTCCATCTGTCCCTGGTTTGAGGAAG TGGTTAGGATAGTCTCAGCCATGACATGAATCCTAGCACTTGTGATTTATCTTATGATCACTGTATTATCTATATGCTCT GAGCCCAACTGTTTATTTGATCAAAGAACTTATACAACTTTGCAGCTGGTAGGAACTGATCATTGTACCTTTAATTCCAC CCAAAAAGCTCATGGAATTGATGACTTCCGAAAAATTCCAAATGGTGTCAATGGTAATCACGAGCAATGAACCTAGGATT TGGCTGAGAGAATCACTTTATAGGGTAAAGTAAGCCATAACAATTATTAACTGAGAAATCAATGGTTGAGGTTTAAAGAA CATCATAACTTGTTTTACATGTGCAAGTATATGATCACAATCTCAACTGTTGATTTCTTAATCAACGATTGTGATGATTT ATTTTGACATCTAAAGTGACTCACATACTTTAGAAGAGTCAAATCTGATGGTCTTAGATATTTGTGGCATGAATACATTG TGGTTGCTTTTGAAATGTTTTATTACTAATACACATTGCCAACCAAAATCTCTAGGTATTGAAGAAAGGATGCATGTGGT TTGGGATACCATGGTGGTATGATAATAATTTTCCAGCTTAGTCCTCCCTTTCTTGTTAGGTTGGGGTGTGAAATAGTGAA GAGGGTAACATTTTGACTATATTTTCTTCTTATTTATCTCTCAGGAATCTGGCCAAATATCTGTCACCGACTATGTCCGA ATAACAAGCACTGAATGGTATGTTCTTTGTTGATCAAAGTGAAAATTAAAATCCAGTTCTTATGGAATTAAGGGCAATTC AGACTACTTAATTGCTTTTATTTTTAATTTGACAAAGCTGTATGATAAACTTGTCAAGAGTATTAGTAATGCTTTTACTT CTTAAAATATTTTAGCGCTAGAATCTTCAACATATATCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCAGATATTA TCATTCTGAATCCAAATGCAAGTTTTGAGATAACTGCAAAGTCTCACCACTCCAGATCAGACACAAATGTCTACGAGGGA AGGAAAGGAAAGGTACTGGTTTCACCATAAATTATTCTTATAAATTCACTTGCATTGGCAAATAACTTCGAGTATCTCAC CCCACCATTCATTACTTGATTTCTTCTTGTACTTGTTTGTGTCCTACGGCTCCATTCAACACGTGCTTCTTATGGTATTT TTGGATCAGCTTCTCTTTCCTCATAATCAATTCTGATACTATACATGCTTCTTCCCAGAATTGATTTTGGCATTAGAATC AATTCTAGAAAGATTTCTGAACATGCACTTAGTATATCGTTCAATAATGTAAGCCTTGTCATGTAACATCCAGAATGACA TTTTTTCTTTGTGGCAGGGGAAAGTTGAAGTGACTGTAGCAGGAGGAAGAGTTGTTTGGGAAAACAATGAACTGACGGTT GCTCCTGGTACTGGGAAATACATACAAATGCCACCTTTTAATTATCTGTTTGATGGACTGGAAAAGAAGGATGCCATTTA TCTAAATTCACTCAAAGCCCCTGTAAAGCGAGCCAAGTCCAGCTCTTGAAAATTTGCTGTTATGCCCTTTAGTATAATTT CAATAATTTCCTACAGGGAAAAACAAAAGTGTTCATCCAGTTTTCAGCTCAAACAGAGAAAAATGTGTATATTCTTATGC ATACAGATAAGAGTTTTTTTTTTTTGTGTGTGCGCAAAAAGAGTTCGTGTGTGTTTAGATACTCTTCCAAACCTCATTAG CAGTTTAGCACACATTTCAATGAAAAAACACATTTTTTCAAAGGAACCAAAAATTGGATTGGATGAAAGGACTTTCACAT TCAACTCAACTCTAATACAAACATATTCCGATTTGCAG
CDS sequence (LotjaGi1g1v0051800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTTCACCTCACAACTCCTTCTTCTTCATTCCTTCTTCTTCTTCTTTCTCATCACTTCATCCTCTTCATCACTTTC ACAATCCAACCAGTTCTGTGAAGCTGGAATTGCAGAATCAGCATGTGGAACTGGAATCCCATCATCATCCAAATTGTTGA TCAAAGGTGGCACCGTCGTCAACGCTCACCACCAACACGTTGCTGATGTCTACGTAGAGGATGGCATCATCGTAGCCGTT GACCCCGATATCAACGTTGGAGATGATGTGAATGTCATAGATGCCACTGGCAAGTTCGTCATGCCAGGAGGAATTGATCC TCACACCCACCTAGCGATAGAGGGTTTGGATATTACATCAGTAGATGACTTCTTCAGTGGTCAGGCTGCAGCATTAGCTG GTGGGACAACGATGCACATTGATTTCATTATACCATCTAATGGGAATTTATCAGCTGCTTTTGATGTCTATGAAAAGAAG GCAAAGAAGTCTTGCATGGACTATGGTTTCCACGTGGCTATAACCAAATGGGATGAAGGTGTTTCAAGAGATATGGAGCT CATGGTCAAGGAGAAAGGTATCAACTCTTTTAAGTTTTTCATGGCATACAAAGGAATTGTCATGGTCAATGATGAGCTCC TTCTCAAAGGATTCAAGAAGTGCAAGTCCCTTGGTGCCTTAGCCATGGTCCATGCAGAAAATGGAGATGCAGTATATGAA GGGCAAAAGAAAATGATAGAACTTGGAATAACTGGTCCCGAGGGGCATCCTCTTTCAAGGCCTGCAGCGTTGGAAGGAGA GGCAACTTCTCGTGCTATTCGCTTAGCAGATTTTATCAACACTCCTTTGTATGTGGTTCATGTAATGAGCATTGATGCAA TGGAAGAAATTGCCAAGGCCCGAAAATCAGGACAAAGGGTAATTGGAGAGCCTATTGTCTCTGGGTTAGCCCTTGATGAC TCTTGGCTTTGGCATCCAGACTTTGAGACTGCAGCAAAGTATGTCATGAGTCCTCCTATTAGGAGACTAGGACATGATAA AGCCCTTCAAGCTGCCCTTGCATCAGGAGTTTTGCAGCTGGTAGGAACTGATCATTGTACCTTTAATTCCACCCAAAAAG CTCATGGAATTGATGACTTCCGAAAAATTCCAAATGGTGTCAATGGTATTGAAGAAAGGATGCATGTGGTTTGGGATACC ATGGTGGAATCTGGCCAAATATCTGTCACCGACTATGTCCGAATAACAAGCACTGAATGCGCTAGAATCTTCAACATATA TCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCAGATATTATCATTCTGAATCCAAATGCAAGTTTTGAGATAACTG CAAAGTCTCACCACTCCAGATCAGACACAAATGTCTACGAGGGAAGGAAAGGAAAGGGGAAAGTTGAAGTGACTGTAGCA GGAGGAAGAGTTGTTTGGGAAAACAATGAACTGACGGTTGCTCCTGGTACTGGGAAATACATACAAATGCCACCTTTTAA TTATCTGTTTGATGGACTGGAAAAGAAGGATGCCATTTATCTAAATTCACTCAAAGCCCCTGTAAAGCGAGCCAAGTCCA GCTCTTGA
Protein sequence (LotjaGi1g1v0051800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQFTSQLLLLHSFFFFFLITSSSSSLSQSNQFCEAGIAESACGTGIPSSSKLLIKGGTVVNAHHQHVADVYVEDGIIVAV DPDINVGDDVNVIDATGKFVMPGGIDPHTHLAIEGLDITSVDDFFSGQAAALAGGTTMHIDFIIPSNGNLSAAFDVYEKK AKKSCMDYGFHVAITKWDEGVSRDMELMVKEKGINSFKFFMAYKGIVMVNDELLLKGFKKCKSLGALAMVHAENGDAVYE GQKKMIELGITGPEGHPLSRPAALEGEATSRAIRLADFINTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPIVSGLALDD SWLWHPDFETAAKYVMSPPIRRLGHDKALQAALASGVLQLVGTDHCTFNSTQKAHGIDDFRKIPNGVNGIEERMHVVWDT MVESGQISVTDYVRITSTECARIFNIYPRKGAILPGSDADIIILNPNASFEITAKSHHSRSDTNVYEGRKGKGKVEVTVA GGRVVWENNELTVAPGTGKYIQMPPFNYLFDGLEKKDAIYLNSLKAPVKRAKSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 535 | 508 | - | – | |
| PANTHER | 48 | 521 | 474 | 4.1E-247 | – | |
| PANTHER | 48 | 521 | 474 | 4.1E-247 | – | |
| SUPERFAMILY | 51 | 502 | 452 | 6.41E-35 | ||
| Gene3D | 52 | 511 | 460 | 1.4E-188 | ||
| TIGRFAM | 52 | 502 | 451 | 1.8E-190 | ||
| CDD | 52 | 498 | 447 | 0.0 | ||
| Pfam | 99 | 485 | 387 | 2.0E-26 | ||
| Gene3D | 103 | 472 | 370 | 1.4E-188 | – | |
| SUPERFAMILY | 103 | 431 | 329 | 6.82E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. |
Expression pattern of LotjaGi1g1v0051800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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