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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0053900 |
| Transcript ID | LotjaGi1g1v0053900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G50390.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390, chloroplastic; TrEMBL-Plants: tr|A0A0R0IMW8|A0A0R0IMW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7582576..7585091) extracted from Lotus japonicus Gifu genome v1.2.
CCAAATCTGGGTGGAAAACACAATGCTTGTGATGCAAACTCATTCCCACTCTCACCTTCTTCCTCTCTTCACATTCATGT TCACTCCCTCTTCTTCAATGCTATGAAGAAGCCACCAACACCAACATCACAACCACTTGAAGTTGTTTTTGGTGCCAATG GAGATTCCACTCTCCAGTTACCAGACCTTATCACTGGACCAATTCCAAGACAGGTCTTGTTTTACCTCAAACATGAGGAA TTGGAGCTACCCTTTCCCCCGGATTCGTTGTTCCTCTTCCATGGAACAAGGGCTGAGGCCAAAACCCAAGAAAACTGAGT ATGTGGATAGAAAAATGCCAGTTTTGGATGATGCCCAGATCATGAAACCATCCACTCCTGGACTCTGTAGTCAGATAGAG AAGTTGGGTTTGTGTAATAGGCATAGGGAGGCAATGGAGCTGTTTGAAATTTTGGAACTTGAAGGTGACTGTGCTGATGT GGGTGCTAGCACATATGATGCTTTGGTGAATGTTTGTGTTGGTTTGAGATCGATTAGAGGTGTTAAGAAGGTGTTCAATT ATATGATTAGTAGTGGGTTTGAGCCTGATTTGTATATGATGAACAGGGTTTTGCTTATGCATGTGAAATGTGGTCTCATG CTCGATGCGCGCAAGCTGTTTGGTGATATGCCTGAGAGAGATGTGGTTTCGTGGATGACCGTGATTGGCGGACTTGTGGA TTCCGGGGATTACTCTGAAGCTTTCGGGTTGTTTTTGTTCATGTGGGTGGAGTTTAATGATGGCAGGTCTCGTACTTTTG CCACCATGGTTCGGGCGTCGGCTGGGTTGGGTCTTATTCAGGTGGGAAGACAGATTCATTCATGTGCTTTGAAGATGGGA GTGGGGGGAGATAGTTTTGTGGCTTGTGCACTGATTGACATGTATAGCAAGTGTGGTAGCATTGAAGATGCTCAATGTGC GTTTGATCAAATGCCGGAGAAGACAACTGTAGGGTGGAATTCTATTATTGCTGGCTATGCGCTTCATGGTTACAGTGAGG AGGCTCTTAGTATATACCTAGAGATGCGTGATAGTGGTGCTAAAATAGACCATTTCACTATTTCAATAGTGATAAGAATT TGTGTGAGATTGGCATCGTTAGAACATGCGAAACAAGCTCATGCTGCATTAGTTCGTCATGGTTTTGGCTCGGATATAGT GGCAAACACAGCGCTTGTTGACTTCTATAGCAAATGGGGTAGGATGGAAGATGCTCGACATGTTTTTGATCGGATGCATC GCAAGAATGTTATATCTTGGAATGCGTTGATTGCCGGATACGGTAATCATGGTCAGGGAGAACAGGCAATACAAATGTTT GAGCAGATGCTTCGAGAAAGGGTGATTCCCAACCATGTCACTTTTCTTGCTGTCTTATCTGCTTGTAGCTATTCAGGATT ATCGGAACGAGGGTGGGAGATTTTTTACTCCATGAGTAGAGATCACAAGGTTAAGCCCCGAGCTATGCATTATGCATGTA TGATTGAACTATTAGGGCGAGAGGGCTTATTAGATGAAGCTTTTGCACTAATAAGACGTGCTCCTTTCGAGCCAACCAAA AACATGTGGGTAGCATTGCTGACAGCATGCAGAATGCATGGGAATTTAGAGCTTGGGAAGTTCGCAGCCGAAAAGCTTTA CGAAATGGATCCTGGAAAGCTATGTAACTATGTGATGCTTCTGAATATATACAACAGTTCTGGCAAATTGAAGGAAGCTG CTGGTGTTTTACAAACCTTAAAGAGGAAGGGTTTAAGAATGCTTCCAACTTGTACCTGGATTGAAGTCAAGAAACAGCCA CATGCATTCCTCTGCGGAGATAAATCTCACACCCAGACAAAAGAAATTTACCAAAAGGTGGATGAAATATTAGATGAGAT ATCAAGGCATGGTTACATTAAGGAGAATGAAATGCTGCTTCCTGATGTGGATGAAGAGGAACAGCGCCTTCAACAATACC ATAGCGAAAAGCTGGCAATAGCTTTCGGTCTTATCAACACTCCAGATTGGACACCTTTGCAGATTACTCAAGGACATCGC GTATGCGGGGATTGCCATAATGCAATCAAACTTATAGCCATGGTCACAGGACGAGAGATTGTGGTGAGAGATGCTAGTAG ATTTCACCATTTTAGAAATGCGACTTGTTCTTGTGGCGATTATTGGTGATGGCAAAACTGTGTCATTCAAGACTCAGGGA CTTGTAAACAGAGTAGCTAGCTTTTGATAACTGCCCTTCTCCCCTTATTGTCCCCAAACTTAGGTCCACTTTTGAGTAGG ATACAATTATATAATTCACTTTGTACTGTTTTATTTCTTGATTTCCCCCCCTAGGAATATGACTGAGCTGAAGTTGTAAT AAAAATGTATGAATGAAATGAAAAGATTTATACGGTAGGTAGAAAAGAAGTGTCCAATTTTCTCTTCTGGTTTCAGTTTA TTATTTGTTCTTTGCTTATGTTTATTCTAAATCTTT
CDS sequence (LotjaGi1g1v0053900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTCCACTCTCCAGTTACCAGACCTTATCACTGGACCAATTCCAAGACAGGTCTTGTTTTACCTCAAACATGAG GAATTGGAGCTACCCTTTCCCCCGGATTCGTTGTTCCTCTTCCATGGAACAAGGGCTGAGGCCAAAACCCAAGAAAACTG AGTATGTGGATAGAAAAATGCCAGTTTTGGATGATGCCCAGATCATGAAACCATCCACTCCTGGACTCTGTAGTCAGATA GAGAAGTTGGGTTTGTGTAATAGGCATAGGGAGGCAATGGAGCTGTTTGAAATTTTGGAACTTGAAGGTGACTGTGCTGA TGTGGGTGCTAGCACATATGATGCTTTGGTGAATGTTTGTGTTGGTTTGAGATCGATTAGAGGTGTTAAGAAGGTGTTCA ATTATATGATTAGTAGTGGGTTTGAGCCTGATTTGTATATGATGAACAGGGTTTTGCTTATGCATGTGAAATGTGGTCTC ATGCTCGATGCGCGCAAGCTGTTTGGTGATATGCCTGAGAGAGATGTGGTTTCGTGGATGACCGTGATTGGCGGACTTGT GGATTCCGGGGATTACTCTGAAGCTTTCGGGTTGTTTTTGTTCATGTGGGTGGAGTTTAATGATGGCAGGTCTCGTACTT TTGCCACCATGGTTCGGGCGTCGGCTGGGTTGGGTCTTATTCAGGTGGGAAGACAGATTCATTCATGTGCTTTGAAGATG GGAGTGGGGGGAGATAGTTTTGTGGCTTGTGCACTGATTGACATGTATAGCAAGTGTGGTAGCATTGAAGATGCTCAATG TGCGTTTGATCAAATGCCGGAGAAGACAACTGTAGGGTGGAATTCTATTATTGCTGGCTATGCGCTTCATGGTTACAGTG AGGAGGCTCTTAGTATATACCTAGAGATGCGTGATAGTGGTGCTAAAATAGACCATTTCACTATTTCAATAGTGATAAGA ATTTGTGTGAGATTGGCATCGTTAGAACATGCGAAACAAGCTCATGCTGCATTAGTTCGTCATGGTTTTGGCTCGGATAT AGTGGCAAACACAGCGCTTGTTGACTTCTATAGCAAATGGGGTAGGATGGAAGATGCTCGACATGTTTTTGATCGGATGC ATCGCAAGAATGTTATATCTTGGAATGCGTTGATTGCCGGATACGGTAATCATGGTCAGGGAGAACAGGCAATACAAATG TTTGAGCAGATGCTTCGAGAAAGGGTGATTCCCAACCATGTCACTTTTCTTGCTGTCTTATCTGCTTGTAGCTATTCAGG ATTATCGGAACGAGGGTGGGAGATTTTTTACTCCATGAGTAGAGATCACAAGGTTAAGCCCCGAGCTATGCATTATGCAT GTATGATTGAACTATTAGGGCGAGAGGGCTTATTAGATGAAGCTTTTGCACTAATAAGACGTGCTCCTTTCGAGCCAACC AAAAACATGTGGGTAGCATTGCTGACAGCATGCAGAATGCATGGGAATTTAGAGCTTGGGAAGTTCGCAGCCGAAAAGCT TTACGAAATGGATCCTGGAAAGCTATGTAACTATGTGATGCTTCTGAATATATACAACAGTTCTGGCAAATTGAAGGAAG CTGCTGGTGTTTTACAAACCTTAAAGAGGAAGGGTTTAAGAATGCTTCCAACTTGTACCTGGATTGAAGTCAAGAAACAG CCACATGCATTCCTCTGCGGAGATAAATCTCACACCCAGACAAAAGAAATTTACCAAAAGGTGGATGAAATATTAGATGA GATATCAAGGCATGGTTACATTAAGGAGAATGAAATGCTGCTTCCTGATGTGGATGAAGAGGAACAGCGCCTTCAACAAT ACCATAGCGAAAAGCTGGCAATAGCTTTCGGTCTTATCAACACTCCAGATTGGACACCTTTGCAGATTACTCAAGGACAT CGCGTATGCGGGGATTGCCATAATGCAATCAAACTTATAGCCATGGTCACAGGACGAGAGATTGTGGTGAGAGATGCTAG TAGATTTCACCATTTTAGAAATGCGACTTGTTCTTGTGGCGATTATTGGTGA
Protein sequence (LotjaGi1g1v0053900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIPLSSYQTLSLDQFQDRSCFTSNMRNWSYPFPRIRCSSSMEQGLRPKPKKTEYVDRKMPVLDDAQIMKPSTPGLCSQI EKLGLCNRHREAMELFEILELEGDCADVGASTYDALVNVCVGLRSIRGVKKVFNYMISSGFEPDLYMMNRVLLMHVKCGL MLDARKLFGDMPERDVVSWMTVIGGLVDSGDYSEAFGLFLFMWVEFNDGRSRTFATMVRASAGLGLIQVGRQIHSCALKM GVGGDSFVACALIDMYSKCGSIEDAQCAFDQMPEKTTVGWNSIIAGYALHGYSEEALSIYLEMRDSGAKIDHFTISIVIR ICVRLASLEHAKQAHAALVRHGFGSDIVANTALVDFYSKWGRMEDARHVFDRMHRKNVISWNALIAGYGNHGQGEQAIQM FEQMLRERVIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMIELLGREGLLDEAFALIRRAPFEPT KNMWVALLTACRMHGNLELGKFAAEKLYEMDPGKLCNYVMLLNIYNSSGKLKEAAGVLQTLKRKGLRMLPTCTWIEVKKQ PHAFLCGDKSHTQTKEIYQKVDEILDEISRHGYIKENEMLLPDVDEEEQRLQQYHSEKLAIAFGLINTPDWTPLQITQGH RVCGDCHNAIKLIAMVTGREIVVRDASRFHHFRNATCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 76 | 228 | 153 | 6.6E-21 | ||
| PANTHER | 83 | 233 | 151 | 4.5E-91 | – | |
| ProSiteProfiles | 109 | 143 | 35 | 9.098 | ||
| Pfam | 111 | 141 | 31 | 1.1 | ||
| TIGRFAM | 112 | 144 | 33 | 5.2E-5 | ||
| ProSiteProfiles | 144 | 178 | 35 | 7.991 | ||
| Pfam | 149 | 175 | 27 | 0.3 | ||
| Pfam | 177 | 202 | 26 | 0.011 | ||
| ProSiteProfiles | 210 | 244 | 35 | 5.119 | ||
| PANTHER | 212 | 329 | 118 | 4.5E-91 | – | |
| ProSiteProfiles | 245 | 275 | 31 | 8.21 | ||
| Gene3D | 245 | 336 | 92 | 4.9E-9 | ||
| Pfam | 251 | 275 | 25 | 0.046 | ||
| Pfam | 276 | 322 | 47 | 1.5E-9 | ||
| ProSiteProfiles | 276 | 310 | 35 | 10.139 | ||
| TIGRFAM | 280 | 311 | 32 | 3.1E-5 | ||
| ProSiteProfiles | 311 | 345 | 35 | 6.906 | ||
| PANTHER | 329 | 535 | 207 | 4.5E-91 | – | |
| Gene3D | 337 | 404 | 68 | 1.5E-9 | ||
| ProSiteProfiles | 346 | 376 | 31 | 8.791 | ||
| TIGRFAM | 351 | 378 | 28 | 1.5E-5 | ||
| SUPERFAMILY | 356 | 538 | 183 | 2.63E-5 | ||
| Pfam | 376 | 423 | 48 | 2.5E-12 | ||
| ProSiteProfiles | 377 | 411 | 35 | 12.364 | ||
| TIGRFAM | 379 | 412 | 34 | 5.8E-8 | ||
| Gene3D | 405 | 580 | 176 | 4.7E-23 | ||
| ProSiteProfiles | 412 | 447 | 36 | 7.772 | ||
| ProSiteProfiles | 448 | 478 | 31 | 6.193 | ||
| Pfam | 452 | 473 | 22 | 0.43 | ||
| ProSiteProfiles | 514 | 548 | 35 | 7.848 | ||
| Pfam | 518 | 546 | 29 | 0.89 | ||
| Pfam | 550 | 673 | 124 | 1.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0053900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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