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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0057600 |
| Transcript ID | LotjaGi1g1v0057600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/WD-40 repeat-containing protein family; TAIR: AT5G21040.1 F-box protein 2; Swiss-Prot: sp|Q94AD8|FBW3_ARATH F-box/WD-40 repeat-containing protein At5g21040; TrEMBL-Plants: tr|A0A151U1T0|A0A151U1T0_CAJCA F-box/WD-40 repeat-containing protein family; Found in the gene: LotjaGi1g1v0057600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8060351..8062862) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCCTAGCCCCATAAAGTTGTTACCCTAATCCCCTTTTCTTCAATACAAACAAACCCTCTATTCCTCTTTCACTTCGT TCGTTTCTCTCCACAATTCATTCATTCTCATTCAAGGTATATTCCAATCTCAATCTCTCTCACCCTTTCATCAAACCTTC AATTTTTCTTCTTCTATTATGATTCTTTCGTCAATTAGGGTTAATTTCACTCTTCTCCCCAATTAGGGTTTCAATTTTTC CCCTATTCATTGTTTTCGCTTTTTGGGAATTTTTCAATTTCTAACGTTTCTGGGGTTTGATTCTTCAACCCTTTTGTCTC ATATCATAGTATCCCAATTTTTTATGGCATTTGAGTGCCCACTGAGTACCAAGGTTTCTCAAAATTTGGTCAATTTTGTG GAAAATCCTGGCATAGGGATAGTTGAACCAAATCAGCTTAGTTCAAAACCCAATATTGCAATTGGCAATCCTGTTCTGAA TACCAAACGTGAGTCTAGGAAAGGTGAGAGCTTGAAGGGTGCAGGTGCAGGTGCATCAAAATTTCATAGTTCTAAGAAAG GAAACAAAGCCCCTGCTAGTAGTGATTTGAACCAGTCATCAGTTCCTGGTGATGAGGTGGTATTTGCGTCTTGTCGGTCC ATCACTGATCTTCCGCCGGCACTGATATCTGAGATTCTCAATTGCCTTGACCCGAAAGATCTTGGCATTGTTTCGTGTGT GTCGACGATTCTTCGTGGTCTTGCGTCTGAGCATCATGCTTGGAAGGAATTCTACTGTGAGAGGTGGGGGCTTCCAGCAG CTCCAGTTGTGCTGGATTCTGAGTCTGCAGTTGATGATGATAAGTCATGGAAGGAAATTTTCGTGGAAAGGGAGTTTAGG AGTAAGACGTTTATGGGGCGGTATAGTATGGATGTGTTGTATGGCCACACTGAAGCTGTTAAGACTGTTTTCTTGCTGGC TTCTGCAAAGCTCATATTTACTTCTGGGTATGACTCTGTTGTGAGGATGTGGGACATGGAGGATGGGTTGTCAATTGCAT CGTCAAGACCACTAGGCTGCACCATTCGTGCCGTCGCAGCAGATCGAAGACTGCTGGTTGCCGGCGGCACTGATGGATTC ATTCATTGCTGGAGGGCTGTTGAAGGACTGCCCCATCTGTTTGAACTTAAAGTCTCATCACAAAACCAGAATACTGAGGT TCGGCTTTGGGGACATGAAGGTCCGGTAACTTCACTTGCTTTGGATTTGACAAGGATTTATAGTGGTTCATGGGACACGA CTGTTCGAGTGTGGGATCGGCATTCAATGAAGTGTACTGTGGTGCTGAGGCACAGTGATTGGGTCTATGGACTTGTCCCT CATGATACCACAGTTGCAAGCACATCAGGTTCAGATGTGTATGTTTGGGATACTCATAGTGGTGTTCTGCTGACCATAAT TCACGATGCTCATGCTGGTAACACTTATGCTTTAGCTCGAAGCCATACAGGGGACTTTCTTTTCACTGGAGGTGAAGATG GCGCCATACACATGTATGAAATTGTGAGTGACAGCAACGAGACTGGAGCTTGGCATGTTGCTGCTTGGATTCCTCACTCA GGTCCTGTGCATTCCCTTGCTTTTGAGTTTCCGTGGCTTGTTTCTGCATCAAGTGATGGCAAGCTAGCGCTCATTGACGT GAGAAAACTGCTGCGGACTAGTAAGCGCGCTTTAAGGAAGAGAGCTACAAAGGTGAAGTATTTGAGTGAAGCCATAGTAG AGCCTCCGCAGAGGATGCTGCATGGATTTAAGAGCAATCTTTACTCTGTTAATATAGGAGCTGATCGAATTGTCTGTGGA GGTGAAGAGGGTGTCGTGAGGATCTGGAATTTCACAGAAGCTTTGGAGATTGAGCGTAGAGTCCGCGCATTAAGAGGAAT ACGGCTAGAGAACAGAATGAGGCGGCGGAAGCTCCAAACAGAGATAAGCAGTAAAGGTGGTCGGACCGATCAATGCTCAG TTGCAGCAGTCAAGAAGAATTCTGGGAGTTGTATTTGGCCCAATAAACGTGGCATGAGTGGGAAGCTGAAGGCCTAGTGG TGAGTCTGGTGACTGGTGTAATTTATATCGTTTGCTTTTAAGCACCTATTATCAGTGGTTTTAATGTTTTATTATATTAA TATATTTTTATCAAATTTATGTATACAATATTTCAGTTTTAAACAGGTAAACTGACAAACTTTAGTTTCTTCTTCAGTGA ATGTTCTCACTTGTAATTGCTTTACAGTAGTAGTAGTAAACAATGCGAATTTTATTTTGTGTAGTTGTTAAGATTTACCA TTTTGACTAGAATGCTATATGCGCATTATGTTGCATGATCACATAGTTTAAAGTCAGATAAGTTTAGAATATGGATATGT CAAGGGTACGGGTGGGCATGGGCATGGGCATGGGCATGGGCAGTATATATCCACCACCCATTCTGTGGGTAAAAAATATG TATATGTACCCGTTTTATACCCACATGAATAT
CDS sequence (LotjaGi1g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTGAGTGCCCACTGAGTACCAAGGTTTCTCAAAATTTGGTCAATTTTGTGGAAAATCCTGGCATAGGGATAGT TGAACCAAATCAGCTTAGTTCAAAACCCAATATTGCAATTGGCAATCCTGTTCTGAATACCAAACGTGAGTCTAGGAAAG GTGAGAGCTTGAAGGGTGCAGGTGCAGGTGCATCAAAATTTCATAGTTCTAAGAAAGGAAACAAAGCCCCTGCTAGTAGT GATTTGAACCAGTCATCAGTTCCTGGTGATGAGGTGGTATTTGCGTCTTGTCGGTCCATCACTGATCTTCCGCCGGCACT GATATCTGAGATTCTCAATTGCCTTGACCCGAAAGATCTTGGCATTGTTTCGTGTGTGTCGACGATTCTTCGTGGTCTTG CGTCTGAGCATCATGCTTGGAAGGAATTCTACTGTGAGAGGTGGGGGCTTCCAGCAGCTCCAGTTGTGCTGGATTCTGAG TCTGCAGTTGATGATGATAAGTCATGGAAGGAAATTTTCGTGGAAAGGGAGTTTAGGAGTAAGACGTTTATGGGGCGGTA TAGTATGGATGTGTTGTATGGCCACACTGAAGCTGTTAAGACTGTTTTCTTGCTGGCTTCTGCAAAGCTCATATTTACTT CTGGGTATGACTCTGTTGTGAGGATGTGGGACATGGAGGATGGGTTGTCAATTGCATCGTCAAGACCACTAGGCTGCACC ATTCGTGCCGTCGCAGCAGATCGAAGACTGCTGGTTGCCGGCGGCACTGATGGATTCATTCATTGCTGGAGGGCTGTTGA AGGACTGCCCCATCTGTTTGAACTTAAAGTCTCATCACAAAACCAGAATACTGAGGTTCGGCTTTGGGGACATGAAGGTC CGGTAACTTCACTTGCTTTGGATTTGACAAGGATTTATAGTGGTTCATGGGACACGACTGTTCGAGTGTGGGATCGGCAT TCAATGAAGTGTACTGTGGTGCTGAGGCACAGTGATTGGGTCTATGGACTTGTCCCTCATGATACCACAGTTGCAAGCAC ATCAGGTTCAGATGTGTATGTTTGGGATACTCATAGTGGTGTTCTGCTGACCATAATTCACGATGCTCATGCTGGTAACA CTTATGCTTTAGCTCGAAGCCATACAGGGGACTTTCTTTTCACTGGAGGTGAAGATGGCGCCATACACATGTATGAAATT GTGAGTGACAGCAACGAGACTGGAGCTTGGCATGTTGCTGCTTGGATTCCTCACTCAGGTCCTGTGCATTCCCTTGCTTT TGAGTTTCCGTGGCTTGTTTCTGCATCAAGTGATGGCAAGCTAGCGCTCATTGACGTGAGAAAACTGCTGCGGACTAGTA AGCGCGCTTTAAGGAAGAGAGCTACAAAGGTGAAGTATTTGAGTGAAGCCATAGTAGAGCCTCCGCAGAGGATGCTGCAT GGATTTAAGAGCAATCTTTACTCTGTTAATATAGGAGCTGATCGAATTGTCTGTGGAGGTGAAGAGGGTGTCGTGAGGAT CTGGAATTTCACAGAAGCTTTGGAGATTGAGCGTAGAGTCCGCGCATTAAGAGGAATACGGCTAGAGAACAGAATGAGGC GGCGGAAGCTCCAAACAGAGATAAGCAGTAAAGGTGGTCGGACCGATCAATGCTCAGTTGCAGCAGTCAAGAAGAATTCT GGGAGTTGTATTTGGCCCAATAAACGTGGCATGAGTGGGAAGCTGAAGGCCTAG
Protein sequence (LotjaGi1g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFECPLSTKVSQNLVNFVENPGIGIVEPNQLSSKPNIAIGNPVLNTKRESRKGESLKGAGAGASKFHSSKKGNKAPASS DLNQSSVPGDEVVFASCRSITDLPPALISEILNCLDPKDLGIVSCVSTILRGLASEHHAWKEFYCERWGLPAAPVVLDSE SAVDDDKSWKEIFVEREFRSKTFMGRYSMDVLYGHTEAVKTVFLLASAKLIFTSGYDSVVRMWDMEDGLSIASSRPLGCT IRAVAADRRLLVAGGTDGFIHCWRAVEGLPHLFELKVSSQNQNTEVRLWGHEGPVTSLALDLTRIYSGSWDTTVRVWDRH SMKCTVVLRHSDWVYGLVPHDTTVASTSGSDVYVWDTHSGVLLTIIHDAHAGNTYALARSHTGDFLFTGGEDGAIHMYEI VSDSNETGAWHVAAWIPHSGPVHSLAFEFPWLVSASSDGKLALIDVRKLLRTSKRALRKRATKVKYLSEAIVEPPQRMLH GFKSNLYSVNIGADRIVCGGEEGVVRIWNFTEALEIERRVRALRGIRLENRMRRRKLQTEISSKGGRTDQCSVAAVKKNS GSCIWPNKRGMSGKLKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 38 | 86 | 49 | - | – | |
| PANTHER | 58 | 556 | 499 | 5.9E-273 | – | |
| PANTHER | 58 | 556 | 499 | 5.9E-273 | – | |
| MobiDBLite | 72 | 86 | 15 | - | – | |
| SUPERFAMILY | 90 | 176 | 87 | 2.75E-15 | ||
| Gene3D | 94 | 182 | 89 | 3.6E-10 | – | |
| ProSiteProfiles | 97 | 143 | 47 | 11.22 | ||
| Pfam | 99 | 144 | 46 | 1.8E-6 | ||
| SMART | 103 | 143 | 41 | 4.9E-7 | ||
| Gene3D | 183 | 410 | 228 | 7.2E-37 | ||
| SMART | 185 | 224 | 40 | 0.022 | ||
| SUPERFAMILY | 189 | 511 | 323 | 1.25E-44 | ||
| ProSiteProfiles | 192 | 454 | 263 | 22.122 | ||
| ProSiteProfiles | 192 | 233 | 42 | 13.215 | ||
| PRINTS | 211 | 225 | 15 | 5.2E-5 | ||
| ProSitePatterns | 211 | 225 | 15 | - | ||
| SMART | 227 | 264 | 38 | 54.0 | ||
| SMART | 281 | 318 | 38 | 1.1E-4 | ||
| ProSiteProfiles | 288 | 327 | 40 | 11.21 | ||
| Pfam | 290 | 318 | 29 | 4.4E-4 | ||
| PRINTS | 305 | 319 | 15 | 5.2E-5 | ||
| SMART | 321 | 356 | 36 | 2.1 | ||
| SMART | 359 | 399 | 41 | 0.068 | ||
| SMART | 409 | 445 | 37 | 1.6 | ||
| Gene3D | 411 | 526 | 116 | 1.7E-8 | ||
| SMART | 472 | 509 | 38 | 1.8 | ||
| PRINTS | 496 | 510 | 15 | 5.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0057600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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