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LotjaGi1g1v0060800.1

Overview

Field Value
Gene ID LotjaGi1g1v0060800
Transcript ID LotjaGi1g1v0060800.1
Lotus japonicus genome version Gifu v1.2
Description Structural maintenance of chromosomes protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8511750..8516513) extracted from Lotus japonicus Gifu genome v1.2.

CTTTTAGCTGAGCAGCAGAAGATTTATGCCAAGCGTGCTCATGACAAATCAGAAATAGAACAGCTTAGGCAGGACGTTGC TAATGCTAACAAGCAGAAGCAATTAATTTTTAAAGCTCTTGCAAAAAAGGTACTAATGGATATTATATCATACTCAGTTA TCACCTGAGAGCTTCTTTTCTGTGGAGTTGCTTGGGAAAATTTCACTGCTTATTCCTTATCATTTTTTCCCTTAATTGCA TGTAGGAGAAGTCACTTGTGGATGTCCAGAACCAGATTGAACAACTTAAAGCTAGCTTGGCAATGAAAAAAACTGAAATG GGCACGGATCTCATTGATCATTTAACACCAGAGGAAAAAAAACTTTTGTCAGATTTGCACCCTGAAATCAAAGACCTTAG AGAGAAGCTTGTAGCTTGCAAGACTGATCGCATTGAGGTTATTGAATGAATTAAATTGATGCTCGTAATCTTTAAAGGGC AAGTGTCCTTATCTTACCTTAAATTTTGCAGACTGAAGCACAGAAAGCAGAGCTGGAAACTAATCAAACTACTAACCTTG AGAGAAGGAAACAAGAGTTGGAAGCTGTAATATCATCTGTGGATGCTGACTCTTTGGTTGTTGACTCTGAATTGAAGGGG CAGGAACTTCATGATGCTAAAATATTGGTTGATGATGTATCGGGACAGTTCAAAAGTAAGAAGTTCAACCAATATTGTCT TTTATATATGTCTTGAAGCTCAAATTATGGTTCCTTGTTTGACTAAATATTCCTCTTCAGGAGTTTCTGAAAGTATAAAT GACCGAATGAGCAAAATTGAAAAGATCAAAGATGAAATGAATGAAAAGAAGGTAGTGCTTTTATAAATTGGTTGTTGGTC ATACGTGGTTTCTTCATGATAATGGCGGCTTTTGGTTGCAGTGTTTGGAGGATGTGTACGAATCCGAGCTTCAGGAAGTA GCAAGAGAACTAGAGAAATTACTGAGTGATAAAAATATATATTCTGCCAAAGAAGTGGAGTATACCAAGAAAATAAGGGA AGTTGGCCCATTGACATCAGATGCTTTTGAGACGTAAGGCTTCTCTCTTGTTTCAGTAATATGAATTTATTTATTTCCTT TTTGAATGTATTTTGTGTGTATATGATTTTTTTATTGGATAGGAAAAAAAGATATTTTGGACAGATCAAGAAATGAAAGT TGATTTATTCAGAAAGCACTGCAGCATTTCATTTTCTTTCCCTATGTCATTTAGTTTATGTAAACATTCTATTAGCAACA TTTCATGAAGGTATTCCAAACCTAACTGGTGCAATGTAGTATTTTCATGAAAGCCATACTCCTTCTCACTTCAGTTGCCA TAAAATATGGCATGGCTAACTCTTGCAGTGGTGTAAGAATGTACCTTTTTCAAACCTAACCAGCAAGCACATGAAATCTT ATGTTTAGTGTCTGCAGCACATTTTACATTATTTTTCTTGACGTGTTATTCAAATCTGAACTGTTCTCTTTTTATTATAT TTTTTTAATGGAGATTTGGTATTTAGTAAATTGTTCAGATAAATTTGATTATGATGCATGATATTTTTAATGTTTTCACT TTTCATTAAAATAAGGAACTGCTTGGACATGACAGGTACAAGCAGAGGAACATAAAAGCTTTGCGCAAAATGCTGCACAG ATGCAATGAGCAATTGCAACAGTTTAGTCATGTGAACAAGAAAGCACTTGACCAGTACGTAAATTTTACGGAAAAACGAG AAGAACTTCAGAAAAGGCTAGCTGAACTTAATGAAGGAGATGAGGTACTTTACTGGGACTTGGTTTGGAAAGTCCTTTAT AATTACTTAAAAGGAATGGGGTGAAATGATTTGAATATTATTTGTTATGTAATTACACATTTAGAAACTCCATCTATATA GATTACCATACATCAAACAAATTGCTAATCAAATGAAAAATGGAAACAAATCTATCCTAATATTATGACAGCAATAAAAT AGGTAAAAATGAAATATTCTAGCCCTAGAATAGAATATTTCTACAAGAACAACAACAAAAGTCTTATCCCACGAGTTTGG TCGGTTTCATTAAATTTGTTTCAACAGAAGTGGCTTAATTGCGTGATGAATATTACTTGTTAGCACTTTATTATCTAAAT GTAGTAAGAACACTAGATCTTTCATGGGTCTAAACATTGTTGCTTGTTTATGAGGTCATGAAATAGGCCTTGTTAACCAT TCACCTCTAAGTAGAATTGCCTATTTGGTAATATTTGTCCAATTGAGTTTCCATTATGTATCTTGTATGTAATGGTGCAT GTTAATGTGTTATGTGAGTTTTAGTTTAGAGCTTGGTTTTGAATGTAGCGCTGATTCTGATGCAACTTTTGCGATTGTGA TTATAGTAGTATAAGTAATTGCTAAATCTTTTGACTTTTCTGTCCTTGAATAATTACAGTTAATTAGAGAGCTAATATCA GGGCTAGATCAGCGGAAGAATGAATCGATTGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGAGAAGTATTTTCTGA ACTTGTGCAGGGAGGTCATGGTCATCTAGTTATGATGAAGAAGAAGGTTTGTGATGATTAAATTATATCATGGCTTCTCC ATTCAGTTCTTGTGATTGCATTGGATGGAAAAAGACGATGCTTTACTGCTTGATGCTTTCAAATAGTTTTAACATTATTA ATTTTATGTCAACTGACTTTTTACTCATTTTTTTGTGGTATTTGATTATTGCTTTAATTTATTTCTTTGTATCTGCAAAA TTTGTGAGGAATGTCCACATAGGAATTATTTTTCTTCTTTTAGATTGTAATTGATATGCAAATGGTGTTTCTGGATTCTA TTTCCTTTTCCTCAGGATGGTGATCATGATGATGATGATCAAGATGAGGATGATCCTCGTGAAGCAAATCAAGAGGGGAG AGTTGAGAAGTACATTGGAGTGAGAGTGAAGGCAAGTGTATTCTTGGCTTCTTGCTGTGCCTTTTGTTTTTTTACTTCTG ACTTCTGAGTACATTTCTGAAAATGTTTATTCCTTTCAGGTCTCTTTCACTGGACAAGGGGAGACACAGTCGATGAAGCA GTTGTCTGGGGGCCAAAAAACTGTTGTTGCTCTAACACTTATCTTTGCCATTCAACGATGTGATCCAGCCCCCTTTTATC TATTTGATGAGATTGATGCAGCTCTTGATCCACAGTACAGAACTGCTGTTGGAAGTATCCTTTTATTATCATGTTTGCTA TTTTTTCATGTCAATGACTGGTCATGCATTTTTCCAAAGAACTTAGTGGAAGTGCTCTTGTTTCATTTAAGGTGCATAGT GGAAATGCTTAGATACATTTGCGTTTCTTTTCTTTCCTCAGGCTATGCGCTTGAGTTAATTTATTGTATGGAGTACTTTA TTAGGAATGCACATGAAAAGATACTATTGTGCATGAGAAATTTAATTTCAAGGACCTTCATCTTTGATTGATAGAAGTAT ATTTTTGCTTTCATATTGATTTCTTAGCTAAGGTTTATTACTTTGTAAGAAGCATGTTTTTCTTGATTTGGTAAAGCTTG AAATGGTTTGGATTTATCCACAAAACCGTATGATTTGAAATGATAAGGTTGGAAAATTATTAACATTGGGGTATATGATT ACCAGACATGATTTATGCTAGCATTTTAAGGCATTGTTTGATCTATGTTGCTACTCTATCTAATAGGAAAAGAGTTTGGT TGTAATAGAATCAGGAATAGGATTGAGAGAAAGCAAGAATAGAGATAACTGAGTTCAGAAAATGCAAACTGTATTATGAT TTCATCAAATGAGAAATGTACAAGTCTACAAGAGTCTTGTTAATATACAAGAGTTTCTGAAGCAGAAAGATAACTAACTA CTCTAACAGAAGCAGCTGTAACTAACAGACTCTAACAATTTTGTTATTAACAGTATACTAACAGTGACTAACAAACAAAG TAAACTGAAAATATAGCAGTATAACTATCCTTCAACAGATTGTTATATGGGCTTTCTGTGATGTTTAAATTAAAAAATTT GTTCCTGCTTTTGATATTCTGAGTTGCATCTGGATTTCCTTTTATATTCTTAACTTCTATATAGATATGATCCGGCGCCT GGCAGACACAGCTAACACTCAATTTATCACGACGACATTCCGCCCAGAGCTAGTGAAAGTTGCTCACAAGATATATGGAG TGACACATAGAAACAGGGTCAGCCATGTTAATGTTGCATCCATGGAAGAAGCACTAAAATTTGTTGAGCATGATTAGACG CACAATGTCTGAATAAGGTTATCATTATAACTTCTACCCACTATTTCTCTTTCCGACGGTTATGATTGAGATATTTATGT ATTTTTAGGTGCATCCGGCTCCCATGATCTGATATGAAGTGATTTGGTGTCGAGTGCTCTGATCTATACAACAATGTAAC TTGGATTGCAGACTCAAGTTCAGTCAAATTCCTCAACCTACACCTTTGTGAGTTGGAGTAACTGGTGTGACACCAAACTA GGTCTTTGAGTAATTCAAAACAATGTTCTTAAACTCATCCATTGCTTGTGTTTTCTTTTGATATGATCAAGTTCAAATGA CAATTAAGAATATATGTGTTAAGATGAAGCTCACACTGTGGAGTTATCCAGTTGCAAACTTCATATTTTATTTTAAGCCC TGATTTTTAAACATTCCAATAATATCTTAAGCTCTTCTTACACA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0060800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAAAACTGAAATGGGCACGGATCTCATTGATCATTTAACACCAGAGGAAAAAAAACTTTTGTCAGATTTGCACCC TGAAATCAAAGACCTTAGAGAGAAGCTTGTAGCTTGCAAGACTGATCGCATTGAGACTGAAGCACAGAAAGCAGAGCTGG AAACTAATCAAACTACTAACCTTGAGAGAAGGAAACAAGAGTTGGAAGCTGTAATATCATCTGTGGATGCTGACTCTTTG GTTGTTGACTCTGAATTGAAGGGGCAGGAACTTCATGATGCTAAAATATTGGTTGATGATGTATCGGGACAGTTCAAAAG AGTTTCTGAAAGTATAAATGACCGAATGAGCAAAATTGAAAAGATCAAAGATGAAATGAATGAAAAGAAGTGTTTGGAGG ATGTGTACGAATCCGAGCTTCAGGAAGTAGCAAGAGAACTAGAGAAATTACTGAGTGATAAAAATATATATTCTGCCAAA GAAGTGGAGTATACCAAGAAAATAAGGGAAGTTGGCCCATTGACATCAGATGCTTTTGAGACGTACAAGCAGAGGAACAT AAAAGCTTTGCGCAAAATGCTGCACAGATGCAATGAGCAATTGCAACAGTTTAGTCATGTGAACAAGAAAGCACTTGACC AGTACGTAAATTTTACGGAAAAACGAGAAGAACTTCAGAAAAGGCTAGCTGAACTTAATGAAGGAGATGAGTTAATTAGA GAGCTAATATCAGGGCTAGATCAGCGGAAGAATGAATCGATTGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGAGA AGTATTTTCTGAACTTGTGCAGGGAGGTCATGGTCATCTAGTTATGATGAAGAAGAAGGATGGTGATCATGATGATGATG ATCAAGATGAGGATGATCCTCGTGAAGCAAATCAAGAGGGGAGAGTTGAGAAGTACATTGGAGTGAGAGTGAAGGTCTCT TTCACTGGACAAGGGGAGACACAGTCGATGAAGCAGTTGTCTGGGGGCCAAAAAACTGTTGTTGCTCTAACACTTATCTT TGCCATTCAACGATGTGATCCAGCCCCCTTTTATCTATTTGATGAGATTGATGCAGCTCTTGATCCACAGTACAGAACTG CTGTTGGAAATATGATCCGGCGCCTGGCAGACACAGCTAACACTCAATTTATCACGACGACATTCCGCCCAGAGCTAGTG AAAGTTGCTCACAAGATATATGGAGTGACACATAGAAACAGGGTCAGCCATGTTAATGTTGCATCCATGGAAGAAGCACT AAAATTTGTTGAGCATGATTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0060800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKTEMGTDLIDHLTPEEKKLLSDLHPEIKDLREKLVACKTDRIETEAQKAELETNQTTNLERRKQELEAVISSVDADSL VVDSELKGQELHDAKILVDDVSGQFKRVSESINDRMSKIEKIKDEMNEKKCLEDVYESELQEVARELEKLLSDKNIYSAK EVEYTKKIREVGPLTSDAFETYKQRNIKALRKMLHRCNEQLQQFSHVNKKALDQYVNFTEKREELQKRLAELNEGDELIR ELISGLDQRKNESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDDPREANQEGRVEKYIGVRVKVS FTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADTANTQFITTTFRPELV KVAHKIYGVTHRNRVSHVNVASMEEALKFVEHD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43977
1 432 432 5.5E-147 –
PANTHER
PTHR43977:SF1
1 432 432 5.5E-147 –
Coils
Coil
29 49 21 - –
Coils
Coil
51 71 21 - –
SUPERFAMILY
SSF52540
97 427 331 1.1E-32
IPR027417
Pfam
PF02463
105 415 311 7.0E-30
IPR003395
Coils
Coil
109 160 52 - –
Coils
Coil
208 235 28 - –
Gene3D
G3DSA:3.40.50.300
246 433 188 9.7E-52 –
MobiDBLite
mobidb-lite
282 307 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0060800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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