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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003395
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.598s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0358309.1
n.a. PREDICTED: structural maintenance of chromosomes protein 2-1-like [Cicer arietinum] gi|502158009|ref|XP_004510992.1| chr0 188605790 188615127 +
2 domain predictions
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Lj2g3v1695250.1
n.a. PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi|502114983|ref|XP_004495097.1| chr2 26169191 26176870 +
2 domain predictions
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Lj2g3v2905080.1
n.a. PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3-like [Cicer arietinum] gi|502098061|ref|XP_004491146.1| chr2 38057506 38063279 +
2 domain predictions
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Lj2g3v2905080.2
n.a. PREDICTED: structural maintenance of chromosomes protein 3-like [Cucumis sativus] gi|449448840|ref|XP_004142173.1| chr2 38057506 38078761 +
2 domain predictions
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Lj2g3v2905090.1
n.a. PREDICTED: structural maintenance of chromosomes protein 3-like [Glycine max] gi|356554411|ref|XP_003545540.1| chr2 38063585 38071793 +
2 domain predictions
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Lj3g3v0824810.2
n.a. PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| chr3 10235142 10257519 -
2 domain predictions
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Lj3g3v0824810.3
n.a. PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| chr3 10235142 10257519 -
2 domain predictions
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Lj3g3v0824870.1
n.a. PREDICTED: structural maintenance of chromosomes protein 5-like [Glycine max] gi|356576425|ref|XP_003556332.1| chr3 10278092 10308530 -
2 domain predictions
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Lj3g3v3724440.1
n.a. PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum] gi|502168978|ref|XP_004514508.1| chr3 45040338 45071065 -
2 domain predictions
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Lj4g3v1062150.1
n.a. PREDICTED: structural maintenance of chromosomes protein 4-like [Glycine max] gi|356573489|ref|XP_003554891.1| chr4 15011364 15024439 -
2 domain predictions
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Lj5g3v1073870.1
n.a. PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1| chr5 17456758 17469529 -
2 domain predictions
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Lj5g3v1073870.2
n.a. PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1| chr5 17456758 17469529 -
2 domain predictions
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LotjaGi1g1v0060800.1
n.a. Structural maintenance of chromosomes protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060800 LjG1.1_chr1 8511750 8516513 -
2 domain predictions
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LotjaGi1g1v0060900.1
n.a. Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 LjG1.1_chr1 8529711 8543175 -
2 domain predictions
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LotjaGi1g1v0060900.2
n.a. Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 LjG1.1_chr1 8529711 8543303 -
2 domain predictions
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LotjaGi1g1v0060900.3
n.a. Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|M5WT05|M5WT05_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0060900 LjG1.1_chr1 8529780 8543175 -
2 domain predictions
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LotjaGi1g1v0060900.4
n.a. Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900 LjG1.1_chr1 8534492 8543685 -
2 domain predictions
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LotjaGi3g1v0061500.1
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G62410.1 structural maintenance of chromosomes 2; Swiss-Prot: sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1; TrEMBL-Plants: tr|A0A072TZX1|A0A072TZX1_MEDTR Structural maintenance of chromosomes protein; Found in the gene: LotjaGi3g1v0061500 LjG1.1_chr3 6504434 6515288 +
2 domain predictions
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LotjaGi3g1v0119700.1
n.a. Structural maintenance of chromosomes family protein; TAIR: AT5G15920.1 structural maintenance of chromosomes 5; Swiss-Prot: sp|Q9LFS8|SMC5_ARATH Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr|V7CP68|V7CP68_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0119700 LjG1.1_chr3 14627629 14658968 -
2 domain predictions
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LotjaGi3g1v0552100.1
n.a. Structural maintenance of chromosomes family protein; TAIR: AT5G07660.1 structural maintenance of chromosomes 6A; Swiss-Prot: sp|Q9FLR5|SMC6A_ARATH Structural maintenance of chromosomes protein 6A; TrEMBL-Plants: tr|A0A0S3SER5|A0A0S3SER5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552100 LjG1.1_chr3 96901085 96932063 -
2 domain predictions
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LotjaGi4g1v0139100.1
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723374 20737029 -
2 domain predictions
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LotjaGi4g1v0139100.2
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|I1LWK5|I1LWK5_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723671 20724471 -
2 domain predictions
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LotjaGi4g1v0139100.3
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723671 20736561 -
2 domain predictions
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LotjaGi4g1v0139100.4
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723671 20736819 -
2 domain predictions
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LotjaGi4g1v0139100.5
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723671 20736819 -
2 domain predictions
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LotjaGi4g1v0139100.6
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|K7LXH6|K7LXH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20723671 20736836 -
2 domain predictions
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LotjaGi4g1v0139100.7
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A0R0I695|A0A0R0I695_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20735429 20736755 -
2 domain predictions
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LotjaGi4g1v0139100.8
n.a. Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100 LjG1.1_chr4 20735429 20736792 -
2 domain predictions
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LotjaGi5g1v0181700.1
n.a. Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 LjG1.1_chr5 46287576 46292909 -
2 domain predictions
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LotjaGi5g1v0181700.2
n.a. Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 LjG1.1_chr5 46287576 46299650 -
2 domain predictions
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LotjaGi5g1v0181700.3
n.a. Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0B2P8J7|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700 LjG1.1_chr5 46287576 46299650 -
2 domain predictions
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LotjaGi5g1v0181700.4
n.a. Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700 LjG1.1_chr5 46287576 46299650 -
2 domain predictions
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LotjaGi5g1v0181700.5
n.a. Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SR98|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 LjG1.1_chr5 46287576 46299650 -
2 domain predictions
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