Domain Predictions — View

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MF_01371_B

Source: Hamap

Description

50S ribosomal protein L30 [rpmD].

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003735 View details of GO:0003735 AmiGO InterPro QuickGO	Molecular function	Structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.	Subterm of GO:0005198
GO:0006412 View details of GO:0006412 AmiGO InterPro QuickGO	Biological process	Translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.	Subterm of GO:0034645 GO:0043043 GO:0044267 Part of GO:0010467
GO:0015934 View details of GO:0015934 AmiGO InterPro QuickGO	Cellular component	Large ribosomal subunit	The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).	Subterm of GO:0044391

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2904930.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CM0545.370.nc [Lotus japonicus] gi\|164605530\|dbj\|BAF98596.1\|	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	10
LotjaGi1g1v0061900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0061900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0061900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0061900	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658	10
LotjaGi1g1v0065500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658 mobidb-lite	11
LotjaGi1g1v0065500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp\|C3PL27\|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr\|B0BLA7\|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500	Domains G3DSA:3.30.1390.20 IPR005996 IPR016082 IPR036919 MF_01371_B PF00327 PTHR15892 SSF55129 TIGR01308 cd01658	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01658	CDD	1	9.09