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LotjaGi1g1v0079500.3

Overview

Field Value
Gene ID LotjaGi1g1v0079500
Transcript ID LotjaGi1g1v0079500.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:11478773..11484004) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTGCACTAAGACAGAGACACAGGGTAGCGTTCGCGATTTTGTTTGTTCGTTGCGGCAGCGACGTTTCTAAGTGAGGG AGAGGGAGTGCCCTAACTCTCAACCTTCGCATCTTCCCAAATCCGTTTCATTCTCGTTAGGGTTTTGTTCCGATTTTGAG ACTGCGTTGCAAATTCTACTCTTCAATCAACCAATCTCGTTTCATCGGTATGCAATTCACATTCTCTGTTATCAATTCAT GATTTTCATTGATGCGCCTTATTTTTTGTTTTTCCTTACAAATTATTTGCTGTGTTAATTACTTTGGATATTTGGATATG CATCTGCGTGCATGCTGAATGATTTTGCTTCTAGGATTCAAGAATTTACTTTCTAGGGTTCACGAATTTTCATTCTAGGG TTACGGTTGCTAACAGTTTTATGTGAATTTGTAGGTGGAAGGGGAAACAATGGAGGAGGTAAAGCATAAATCGAGGAAAG AAGATTATGAGGTGAAAGAAAGCGAGACGAAGAGGAGTCACCGTGATCGTGATCGAGAGCGTGTTAGAAAGGAGAGAAGC GAGGGGAGGCATAGGGATAGGGAGAAGAGGGATCGTGAGTCGCGGAGACATGAGAGGGAGAAGAGTACTGACTCTGAAGA TAGAGACAGGGAGAAGAAGCGCAAAGATAAAGATAAATCGAAAGATAAAGAGAGAGAAAAGGGTCGAGATAAGAAAAGGG ACAGAGATAGGGAAGACAAGGAGAGGGAAAGGGCGGAACGAGCAAGGGAGAAAGAAAGAGAGAGGGAGAGAAAGGAGGAG AAGGAGAGGATTAGAGAGAAAGAAAGGGAACGGGAGCGGGAAAAGGAAAAGGAAAGGAGGGATCATGAAAGAGAGAAGGA AAAGGAAAGAGAAAGAGAAAGAGGGAGGAGAGTACGTGACAGGGAGAAGCATAGGGATGATGATAGTGAACACAGTGATA GTGAACCCAGGGAGAGAGATAGGAAGCGGCATAGGAAGGAGGATGACGGTTACAAGGGGAGAGAGAGGGAAAGGAGCAGT GGCAAGTCAAACAGGAAAACTGAGGAACTTGAAGCAAGTCCAAGGAAAAAGAGTGATGGAGATGACTCAGATACCAAAGA AAAGGAGATAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAGGAGGTTGGATGATGAAATGGAAAAGCGGAGGA GGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAAGAAGCAGAAAGAGAAAAGGGTGGTGAAGCAAGTGCTATT GAGCTCGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCGGATGATGAAGATGGAACAGGTACTGGGAAGCTAAATAC AGATATGGATGTAGATGAAGATGACAAATCTGCTGATAAGGAACCTGGGGACTCGATGGTTGTAGATGTTGATAATGGAG CAGTTGCATCTGATTTACAGAATGGGGCTGCTGATGCTTCTCCTGATGAGGAAATAGATCCATTGGACGCTTTCATGAAT TCAATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATGCTGTTACTTCGTCATTTGTTGATAAAGCTGCAGACTTAAACCC GAAGGATAAAGGGGATGAGCGAAGTAGTAGTGCACATCCAAGGAAAGGTTCAAATAAATCTATTGGCAGAATAATTCCCG GTGAAGAGTCTGACACTGAATATGCAGATCCTGAAACTGAGGGGGATGATGTAGATGAAGATGATGATGAGTTCATGAAA AGAGTGAAGAAGACAAAAGTTGAGAAGCTTTCTATTGTTGACCACTCAAAGATTGACTATATACCATTCAGAAAGAATTT TTATATTGAAGTGAGAGAGATCTCGAAGATGACTCCTGAAGAAGTTTCAGTATACAGGAAGCAGTTGGAGTTGAAGATAC ATGGGAAGGATGTGCCTAAGCCTGTAAAATCATGGAACCAGACTGGGCTGACTAGCAAAATTTTGGAGACAATAAAAAAA CATAACTTCGAAAAGCCTATGTCTATTCAAGCTCAGGCGCTGCCTACAATTATGAGTGGTCGAGATTGCATAGGTATTGC TAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCGCCAGTTGTTGCAG GGGATGGACCTATTGGGCTTATCATGGCTCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACT AAGGTACTGGGTATCAGGTGCGTGCCTGTCTATGGTGGTTCAGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTAC TGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGATATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGGAGAG TCACTTATTTGGTTATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAAT ATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCTACTTTCCCCCGCCAGGTTGAAATTCTGGCACGCAAGGTTTTGAA TAAACCTGTAGAAATACAAGTTGGCGGGAGAAGTGTTGTGAACAAAGACATATCACAGCTAGTTGAGGTGAGGCCAGAAA ATGAGAGGTTCTTTAGACTCTTAGAAATACTGGGCGAATGGTATGAGAAAGGAAAGATCTTGATATTTGTCCATTCACAG GAGAAATGTGATTCTTTGTTCAAGGATCTGCTCAGGCACGGTTACCCATGTCTTTCTCTTCACGGGGCTAAGGATCAGAC AGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCCGGGGAT TAGATGTCAAGGAGCTCGAATTGGTGATCAATTATGATGTTTCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGC ACTGGCCGAGCTGGCCGTAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAAATATGCACCAGATCTGGTGAA AGCCTTGGAGCTATCTGAGCAGACTGTTCCCGATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCGAAAGTCAATCAAG GACTGGAGCAAGCGCATGGGACTGGTTATGGAGGAAGTGGCTTTAAGTTTAATGAAGAGGAAGATGAGGTGAGGAAAGCA GCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGATGGTATTAGGAA GGCAGGTGATGTCTCACAGCATCCTGCTCTTGCTCAGTTTCTTGCTGCCTCAAAAGTGAATACTTCTGTGATGCACACTC CCATCTCAGCTGCCCAGCTCATTCCAAATGGTGGACTACCTGTTCCTTTGCCAATTCTCCCGACTTCAACAGTCTTGCCT GGGACAGGGCTACCCCTTGCTACAACTGATGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACAACTTGGC AAAAATACAATCTGAAGCATTGCCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGA AAGTCACACACAAGGAAACCTTAGGCCCCATTTCTGAATGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTTGTCAAC CCTGGCAAAATCCCAGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAATCAGTTAAGAGAGC CAAAACAGAATTGAAGCGTGTTTTGGAAGACATCACAAACCAGGCTTTGCAACTTCCTGGTGGATCTCAACCAGGCAAAT ACTCTGTCGTATAAGGGGTAAGATCCTGATCTAATTTAGCATTGTATTGTTTATTTTACTATAGTGGCTGTTACATGCTC ATGTTACATACTTTCTAAGGGAAATGTGACTGTTCTGCTTAGTAGTTTTTGTCTCGTTATCAATTTCGTTCCTCATTGAT ATACAGCTGTAGAACATCCTTTGCTGGATGGTCTGACTGATTTGATTTAATTTTTTTCCTTTATCCTTTTTGGGTGCATT TCTTTTAGGTTCTGAAATCTAATGAGCATGACTTAGTTTATAATCAGATCTCATAGCTAGTAAATGGCTGATATTTGTTT AGCTGTATTTGTTTAGTTAATTTATTTTTAAGAAGTCCTGCAACCTAAGAGTAAATCTACTTTTGGTAGTCAACGTGAAG GCAAAATGGGAATCTGTTAAACACTCTTGTCTCGCGCCCCGATCCGGGACAAACTGCTCATATAGTCTGCCTTTACCCAT TCATGGTCATACAGGTATGATGATTATTGTGGAAACTGCTGCCCATCTTTTTTTGGCCCTGTGTGTTTGCATGTATGAAA CTTCTTTTGATATCTTTTTGAATACCAACCAATACTACGATGTCATGCTATTGTTTAAATTTTATTTGCACAAAATTTCT ATCCTTTTGATGGTTATCTTCCTTTGTTCATCATTCACTTTGGTGTAGGTGGGTCTAATGAGCCTACGCTTGCATGTTCA ATATTGCTCTATCCACTGCGCTTGCTTCATGGCTCTCTAATGTGCTGATCATGGTGTGGCATTTTTACGTCTACTTCCTG TTTGATTTGAAGCAAACATTCTCGAACTACTGGTTTTGCCTGGTTTTGTGATTTTTGATGCTATTGTGGATTTGTTTATC TGATGTCACGTCTATCTCTCAGGTTTCGGTTTGGCGTTCTCTTGTCATGTAGAGAAACAAGATATGATGGGGAGATCGCA TGATTCGGATATTGATGGCCTTGCCTAACTGCTATGGTTTGGATTTCTGCACATGCTTAAGTTTACCATATCATAACTAT GCTTAATAGCCAGTTTAGGGCTCATAGTGCTATTAGGTTATTGCGCTCTGCCCTAGTTTCGTTGAACTTTTATGTTATAA ACTTTGATTTGGTTTTCTTGAAGTTTTTTCAGGTATTATTGATAGAAAATTTATTAAATATGCTGGACAGTCCTCAATAT AAAGCAGAGAAGTGATTAGTTAATTTGTTTGTATCGATAGTTCTCTGTCATGATTTTAGTAACGTCCATTTTTGCATTTG CACGTCTTTTTAGAATGTGAGACGCTTACAGGTAAAAATGCTAAATGTCACAAGGAAGCTCGTAGAAACATACACTCGAT CTCATATATGCACTAGGATCATAGTAATTTTG 

CDS sequence (LotjaGi1g1v0079500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGGTAAAGCATAAATCGAGGAAAGAAGATTATGAGGTGAAAGAAAGCGAGACGAAGAGGAGTCACCGTGATCG TGATCGAGAGCGTGTTAGAAAGGAGAGAAGCGAGGGGAGGCATAGGGATAGGGAGAAGAGGGATCGTGAGTCGCGGAGAC ATGAGAGGGAGAAGAGTACTGACTCTGAAGATAGAGACAGGGAGAAGAAGCGCAAAGATAAAGATAAATCGAAAGATAAA GAGAGAGAAAAGGGTCGAGATAAGAAAAGGGACAGAGATAGGGAAGACAAGGAGAGGGAAAGGGCGGAACGAGCAAGGGA GAAAGAAAGAGAGAGGGAGAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGGGAACGGGAGCGGGAAAAGGAAA AGGAAAGGAGGGATCATGAAAGAGAGAAGGAAAAGGAAAGAGAAAGAGAAAGAGGGAGGAGAGTACGTGACAGGGAGAAG CATAGGGATGATGATAGTGAACACAGTGATAGTGAACCCAGGGAGAGAGATAGGAAGCGGCATAGGAAGGAGGATGACGG TTACAAGGGGAGAGAGAGGGAAAGGAGCAGTGGCAAGTCAAACAGGAAAACTGAGGAACTTGAAGCAAGTCCAAGGAAAA AGAGTGATGGAGATGACTCAGATACCAAAGAAAAGGAGATAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAGG AGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAAGAAGCAGA AAGAGAAAAGGGTGGTGAAGCAAGTGCTATTGAGCTCGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCGGATGATG AAGATGGAACAGGTACTGGGAAGCTAAATACAGATATGGATGTAGATGAAGATGACAAATCTGCTGATAAGGAACCTGGG GACTCGATGGTTGTAGATGTTGATAATGGAGCAGTTGCATCTGATTTACAGAATGGGGCTGCTGATGCTTCTCCTGATGA GGAAATAGATCCATTGGACGCTTTCATGAATTCAATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATGCTGTTACTTCGT CATTTGTTGATAAAGCTGCAGACTTAAACCCGAAGGATAAAGGGGATGAGCGAAGTAGTAGTGCACATCCAAGGAAAGGT TCAAATAAATCTATTGGCAGAATAATTCCCGGTGAAGAGTCTGACACTGAATATGCAGATCCTGAAACTGAGGGGGATGA TGTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGTTGAGAAGCTTTCTATTGTTGACCACTCAA AGATTGACTATATACCATTCAGAAAGAATTTTTATATTGAAGTGAGAGAGATCTCGAAGATGACTCCTGAAGAAGTTTCA GTATACAGGAAGCAGTTGGAGTTGAAGATACATGGGAAGGATGTGCCTAAGCCTGTAAAATCATGGAACCAGACTGGGCT GACTAGCAAAATTTTGGAGACAATAAAAAAACATAACTTCGAAAAGCCTATGTCTATTCAAGCTCAGGCGCTGCCTACAA TTATGAGTGGTCGAGATTGCATAGGTATTGCTAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGG CATATCAAGGATCAGCCGCCAGTTGTTGCAGGGGATGGACCTATTGGGCTTATCATGGCTCCTACAAGGGAACTTGTTCA ACAGATTCACAGTGATATAAAGAAGTTTACTAAGGTACTGGGTATCAGGTGCGTGCCTGTCTATGGTGGTTCAGGTGTTG CTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGATATACTATGCACC AGTAGTGGGAAAATAACTAACCTGCGGAGAGTCACTTATTTGGTTATGGATGAGGCTGATCGAATGTTTGACATGGGCTT TGAACCTCAAATCACACGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCTACTTTCCCCCGCC AGGTTGAAATTCTGGCACGCAAGGTTTTGAATAAACCTGTAGAAATACAAGTTGGCGGGAGAAGTGTTGTGAACAAAGAC ATATCACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTTAGACTCTTAGAAATACTGGGCGAATGGTATGAGAA AGGAAAGATCTTGATATTTGTCCATTCACAGGAGAAATGTGATTCTTTGTTCAAGGATCTGCTCAGGCACGGTTACCCAT GTCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTG TTGGTTGCAACAAGTATTGCTGCCCGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTATGATGTTTCAAACCA CTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGTAAGGGTTGTGCCATTACATTTATTTCTGAGG AAGAGGCAAAATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGACTGTTCCCGATGATCTGAAAGCTCTT GCTGATAGCTTTATGGCGAAAGTCAATCAAGGACTGGAGCAAGCGCATGGGACTGGTTATGGAGGAAGTGGCTTTAAGTT TAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAG ATTCTGAAGATGAAGATGATGGTATTAGGAAGGCAGGTGATGTCTCACAGCATCCTGCTCTTGCTCAGTTTCTTGCTGCC TCAAAAGTGAATACTTCTGTGATGCACACTCCCATCTCAGCTGCCCAGCTCATTCCAAATGGTGGACTACCTGTTCCTTT GCCAATTCTCCCGACTTCAACAGTCTTGCCTGGGACAGGGCTACCCCTTGCTACAACTGATGGGGCAGCTCGAGCAGCAT TAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTACGAGGCTGAGTTGGAA ATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACCTTAGGCCCCATTTCTGAATGGACTGGAGC TGCCATTACCACCAGGGGGCAGTTTGTCAACCCTGGCAAAATCCCAGGACCTGGGGAACGCAAGCTCTACTTGTTCATTG AGGGTCCTAGTGAGCAATCAGTTAAGAGAGCCAAAACAGAATTGAAGCGTGTTTTGGAAGACATCACAAACCAGGCTTTG CAACTTCCTGGTGGATCTCAACCAGGCAAATACTCTGTCGTATAA 

Protein sequence (LotjaGi1g1v0079500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEVKHKSRKEDYEVKESETKRSHRDRDRERVRKERSEGRHRDREKRDRESRRHEREKSTDSEDRDREKKRKDKDKSKDK EREKGRDKKRDRDREDKERERAERAREKERERERKEEKERIREKEREREREKEKERRDHEREKEKERERERGRRVRDREK HRDDDSEHSDSEPRERDRKRHRKEDDGYKGRERERSSGKSNRKTEELEASPRKKSDGDDSDTKEKEIKPTREEEMEDEQR RLDDEMEKRRRRVQEWQELRRKKEEAEREKGGEASAIELESGKTWTLEGESDDEDGTGTGKLNTDMDVDEDDKSADKEPG DSMVVDVDNGAVASDLQNGAADASPDEEIDPLDAFMNSMVLPEVEKLNNAVTSSFVDKAADLNPKDKGDERSSSAHPRKG SNKSIGRIIPGEESDTEYADPETEGDDVDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFRKNFYIEVREISKMTPEEVS VYRKQLELKIHGKDVPKPVKSWNQTGLTSKILETIKKHNFEKPMSIQAQALPTIMSGRDCIGIAKTGSGKTLAFVLPMLR HIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT SSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD ISQLVEVRPENERFFRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNL LVATSIAARGLDVKELELVINYDVSNHYEDYVHRVGRTGRAGRKGCAITFISEEEAKYAPDLVKALELSEQTVPDDLKAL ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGDVSQHPALAQFLAA SKVNTSVMHTPISAAQLIPNGGLPVPLPILPTSTVLPGTGLPLATTDGAARAALAAINLQHNLAKIQSEALPEHYEAELE INDFPQNARWKVTHKETLGPISEWTGAAITTRGQFVNPGKIPGPGERKLYLFIEGPSEQSVKRAKTELKRVLEDITNQAL QLPGGSQPGKYSVV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 349 349 -
MobiDBLite 1 276 276 -
Coils 88 150 63 -
Coils 232 269 38 -
MobiDBLite 285 323 39 -
PANTHER 328 1133 806 3.1E-284
PANTHER 328 1133 806 3.1E-284
MobiDBLite 378 433 56 -
MobiDBLite 380 397 18 -
MobiDBLite 415 432 18 -
Gene3D 453 709 257 6.4E-86
SUPERFAMILY 483 711 229 7.7E-71
CDD 489 710 222 8.0952E-156
ProSiteProfiles 500 528 29 9.649
SMART 519 724 206 5.7E-61
Pfam 525 696 172 7.0E-49
ProSiteProfiles 531 709 179 32.987
SUPERFAMILY 647 882 236 1.36E-54
ProSitePatterns 655 663 9 -
Gene3D 710 885 176 2.6E-51
ProSiteProfiles 720 881 162 22.733
CDD 721 851 131 9.47635E-55
Pfam 737 842 106 1.4E-26
SMART 761 842 82 2.5E-27
MobiDBLite 916 945 30 -
MobiDBLite 916 930 15 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0079500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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