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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0079500 |
| Transcript ID | LotjaGi1g1v0079500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11479222..11482626) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAGGTAAAGCATAAATCGAGGAAAGAAGATTATGAGGTGAAAGAAAGCGAGACGAAGAGGAGTCACCGTGATCG TGATCGAGAGCGTGTTAGAAAGGAGAGAAGCGAGGGGAGGCATAGGGATAGGGAGAAGAGGGATCGTGAGTCGCGGAGAC ATGAGAGGGAGAAGAGTACTGACTCTGAAGATAGAGACAGGGAGAAGAAGCGCAAAGATAAAGATAAATCGAAAGATAAA GAGAGAGAAAAGGGTCGAGATAAGAAAAGGGACAGAGATAGGGAAGACAAGGAGAGGGAAAGGGCGGAACGAGCAAGGGA GAAAGAAAGAGAGAGGGAGAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGGGAACGGGAGCGGGAAAAGGAAA AGGAAAGGAGGGATCATGAAAGAGAGAAGGAAAAGGAAAGAGAAAGAGAAAGAGGGAGGAGAGTACGTGACAGGGAGAAG CATAGGGATGATGATAGTGAACACAGTGATAGTGAACCCAGGGAGAGAGATAGGAAGCGGCATAGGAAGGAGGATGACGG TTACAAGGGGAGAGAGAGGGAAAGGAGCAGTGGCAAGTCAAACAGGAAAACTGAGGAACTTGAAGCAAGTCCAAGGAAAA AGAGTGATGGAGATGACTCAGATACCAAAGAAAAGGAGATAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAGG AGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAAGAAGCAGA AAGAGAAAAGGGTGGTGAAGCAAGTGCTATTGAGCTCGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCGGATGATG AAGATGGAACAGGTACTGGGAAGCTAAATACAGATATGGATGTAGATGAAGATGACAAATCTGCTGATAAGGAACCTGGG GACTCGATGGTTGTAGATGTTGATAATGGAGCAGTTGCATCTGATTTACAGAATGGGGCTGCTGATGCTTCTCCTGATGA GGAAATAGATCCATTGGACGCTTTCATGAATTCAATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATGCTGTTACTTCGT CATTTGTTGATAAAGCTGCAGACTTAAACCCGAAGGATAAAGGGGATGAGCGAAGTAGTAGTGCACATCCAAGGAAAGGT TCAAATAAATCTATTGGCAGAATAATTCCCGGTGAAGAGTCTGACACTGAATATGCAGATCCTGAAACTGAGGGGGATGA TGTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGTTGAGAAGCTTTCTATTGTTGACCACTCAA AGATTGACTATATACCATTCAGAAAGAATTTTTATATTGAAGTGAGAGAGATCTCGAAGATGACTCCTGAAGAAGTTTCA GTATACAGGAAGCAGTTGGAGTTGAAGATACATGGGAAGGATGTGCCTAAGCCTGTAAAATCATGGAACCAGACTGGGCT GACTAGCAAAATTTTGGAGACAATAAAAAAACATAACTTCGAAAAGCCTATGTCTATTCAAGCTCAGGCGCTGCCTACAA TTATGAGTGGTCGAGATTGCATAGGTATTGCTAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGG CATATCAAGGATCAGCCGCCAGTTGTTGCAGGGGATGGACCTATTGGGCTTATCATGGCTCCTACAAGGGAACTTGTTCA ACAGATTCACAGTGATATAAAGAAGTTTACTAAGGTACTGGGTATCAGGTGCGTGCCTGTCTATGGTGGTTCAGGTGTTG CTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGATATACTATGCACC AGTAGTGGGAAAATAACTAACCTGCGGAGAGTCACTTATTTGGTTATGGATGAGGCTGATCGAATGTTTGACATGGGCTT TGAACCTCAAATCACACGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCTACTTTCCCCCGCC AGGTTGAAATTCTGGCACGCAAGGTTTTGAATAAACCTGTAGAAATACAAGTTGGCGGGAGAAGTGTTGTGAACAAAGAC ATATCACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTTAGACTCTTAGAAATACTGGGCGAATGGTATGAGAA AGGAAAGATCTTGATATTTGTCCATTCACAGGAGAAATGTGATTCTTTGTTCAAGGATCTGCTCAGGCACGGTTACCCAT GTCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTG TTGGTTGCAACAAGTATTGCTGCCCGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTATGATGTTTCAAACCA CTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGTAAGGGTTGTGCCATTACATTTATTTCTGAGG AAGAGGCAAAATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGACTGTTCCCGATGATCTGAAAGCTCTT GCTGATAGCTTTATGGCGAAAGTCAATCAAGGACTGGAGCAAGCGCATGGGACTGGTTATGGAGGAAGTGGCTTTAAGTT TAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAG ATTCTGAAGATGAAGATGATGGTATTAGGAAGGCAGGTGATGTCTCACAGCATCCTGCTCTTGCTCAGTTTCTTGCTGCC TCAAAAGTGAATACTTCTGTGATGCACACTCCCATCTCAGCTGCCCAGCTCATTCCAAATGGTGGACTACCTGTTCCTTT GCCAATTCTCCCGACTTCAACAGTCTTGCCTGGGACAGGGCTACCCCTTGCTACAACTGATGGGGCAGCTCGAGCAGCAT TAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTACGAGGCTGAGTTGGAA ATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACCTTAGGCCCCATTTCTGAATGGACTGGAGC TGCCATTACCACCAGGGGGCAGTTTGTCAACCCTGGCAAAATCCCAGGACCTGGGGAACGCAAGCTCTACTTGTTCATTG AGGGTCCTAGTGAGCAATCAGTTAAGAGAGCCAAAACAGAATTGAAGCGTGTTTTGGAAGACATCACAAACCAGGCTTTG CAACTTCCTGGTGGATCTCAACCAGGCAAATACTCTGTCGTATAA
CDS sequence (LotjaGi1g1v0079500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGTAAAGCATAAATCGAGGAAAGAAGATTATGAGGTGAAAGAAAGCGAGACGAAGAGGAGTCACCGTGATCG TGATCGAGAGCGTGTTAGAAAGGAGAGAAGCGAGGGGAGGCATAGGGATAGGGAGAAGAGGGATCGTGAGTCGCGGAGAC ATGAGAGGGAGAAGAGTACTGACTCTGAAGATAGAGACAGGGAGAAGAAGCGCAAAGATAAAGATAAATCGAAAGATAAA GAGAGAGAAAAGGGTCGAGATAAGAAAAGGGACAGAGATAGGGAAGACAAGGAGAGGGAAAGGGAGAGGATTAGAGAGAA AGAAAGGGAACGGGAGCGGGAAAAGGAAAAGGAAAGGAGGGATCATGAAAGAGAGAAGGAAAAGGAAAGAGAAAGAGAAA GAGGGAGGAGAGTACGTGACAGGGAGAAGCATAGGGATGATGATAGTGAACACAGTGATAGTGAACCCAGGGAGAGAGAT AGGAAGCGGCATAGGAAGGAGGATGACGGTTACAAGGGGAGAGAGAGGGAAAGGAGCAGTGGCAAGTCAAACAGGAAAAC TGAGGAACTTGAAGCAAGTCCAAGGAAAAAGAGTGATGGAGATGACTCAGATACCAAAGAAAAGGAGATAAAACCTACCC GTGAAGAGGAGATGGAGGATGAACAAAGGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAA GAGCTAAGAAGGAAGAAAGAAGAAGCAGAAAGAGAAAAGGGTGGTGAAGCAAGTGCTATTGAGCTCGAGTCTGGAAAGAC CTGGACACTTGAAGGGGAATCGGATGATGAAGATGGAACAGGTACTGGGAAGCTAAATACAGATATGGATGTAGATGAAG ATGACAAATCTGCTGATAAGGAACCTGGGGACTCGATGGTTGTAGATGTTGATAATGGAGCAGTTGCATCTGATTTACAG AATGGGGCTGCTGATGCTTCTCCTGATGAGGAAATAGATCCATTGGACGCTTTCATGAATTCAATGGTTCTTCCTGAAGT TGAAAAGCTGAACAATGCTGTTACTTCGTCATTTGTTGATAAAGCTGCAGACTTAAACCCGAAGGATAAAGGGGATGAGC GAAGTAGTAGTGCACATCCAAGGAAAGGTTCAAATAAATCTATTGGCAGAATAATTCCCGGTGAAGAGTCTGACACTGAA TATGCAGATCCTGAAACTGAGGGGGATGATGTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGT TGAGAAGCTTTCTATTGTTGACCACTCAAAGATTGACTATATACCATTCAGAAAGAATTTTTATATTGAAGTGAGAGAGA TCTCGAAGATGACTCCTGAAGAAGTTTCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGGAAGGATGTGCCTAAG CCTGTAAAATCATGGAACCAGACTGGGCTGACTAGCAAAATTTTGGAGACAATAAAAAAACATAACTTCGAAAAGCCTAT GTCTATTCAAGCTCAGGCGCTGCCTACAATTATGAGTGGTCGAGATTGCATAGGTATTGCTAAAACTGGGTCAGGTAAAA CACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCGCCAGTTGTTGCAGGGGATGGACCTATTGGGCTT ATCATGGCTCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACTAAGGTACTGGGTATCAGGTG CGTGCCTGTCTATGGTGGTTCAGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTC CAGGTAGGATGATTGATATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGGAGAGTCACTTATTTGGTTATGGAT GAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGGCCAGATCGTCAAAC AGTTCTCTTCTCTGCTACTTTCCCCCGCCAGGTTGAAATTCTGGCACGCAAGGTTTTGAATAAACCTGTAGAAATACAAG TTGGCGGGAGAAGTGTTGTGAACAAAGACATATCACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTTAGACTC TTAGAAATACTGGGCGAATGGTATGAGAAAGGAAAGATCTTGATATTTGTCCATTCACAGGAGAAATGTGATTCTTTGTT CAAGGATCTGCTCAGGCACGGTTACCCATGTCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTT CTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCCGGGGATTAGATGTCAAGGAGCTCGAA TTGGTGATCAATTATGATGTTTCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGTAA GGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAAATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGC AGACTGTTCCCGATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCGAAAGTCAATCAAGGACTGGAGCAAGCGCATGGG ACTGGTTATGGAGGAAGTGGCTTTAAGTTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAA AGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGATGGTATTAGGAAGGCAGGTGATGTCTCACAGC ATCCTGCTCTTGCTCAGTTTCTTGCTGCCTCAAAAGGTGGACTACCTGTTCCTTTGCCAATTCTCCCGACTTCAACAGTC TTGCCTGGGACAGGGCTACCCCTTGCTACAACTGATGGGGCAGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACAA CTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTC GCTGGAAAGTCACACACAAGGAAACCTTAGGCCCCATTTCTGAATGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTT GTCAACCCTGGCAAAATCCCAGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAATCAGTTAA GAGAGCCAAAACAGAATTGAAGCGTGTTTTGGAAGACATCACAAACCAGGCTTTGCAACTTCCTGGTGGATCTCAACCAG GCAAATACTCTGTCGTATAA
Protein sequence (LotjaGi1g1v0079500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVKHKSRKEDYEVKESETKRSHRDRDRERVRKERSEGRHRDREKRDRESRRHEREKSTDSEDRDREKKRKDKDKSKDK EREKGRDKKRDRDREDKERERERIREKEREREREKEKERRDHEREKEKERERERGRRVRDREKHRDDDSEHSDSEPRERD RKRHRKEDDGYKGRERERSSGKSNRKTEELEASPRKKSDGDDSDTKEKEIKPTREEEMEDEQRRLDDEMEKRRRRVQEWQ ELRRKKEEAEREKGGEASAIELESGKTWTLEGESDDEDGTGTGKLNTDMDVDEDDKSADKEPGDSMVVDVDNGAVASDLQ NGAADASPDEEIDPLDAFMNSMVLPEVEKLNNAVTSSFVDKAADLNPKDKGDERSSSAHPRKGSNKSIGRIIPGEESDTE YADPETEGDDVDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFRKNFYIEVREISKMTPEEVSVYRKQLELKIHGKDVPK PVKSWNQTGLTSKILETIKKHNFEKPMSIQAQALPTIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGL IMAPTRELVQQIHSDIKKFTKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDISQLVEVRPENERFFRL LEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELE LVINYDVSNHYEDYVHRVGRTGRAGRKGCAITFISEEEAKYAPDLVKALELSEQTVPDDLKALADSFMAKVNQGLEQAHG TGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGDVSQHPALAQFLAASKGGLPVPLPILPTSTV LPGTGLPLATTDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQF VNPGKIPGPGERKLYLFIEGPSEQSVKRAKTELKRVLEDITNQALQLPGGSQPGKYSVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 259 | 259 | - | – | |
| MobiDBLite | 1 | 308 | 308 | - | – | |
| Coils | 90 | 133 | 44 | - | – | |
| Coils | 215 | 252 | 38 | - | – | |
| MobiDBLite | 268 | 306 | 39 | - | – | |
| PANTHER | 299 | 1098 | 800 | 1.1E-286 | – | |
| PANTHER | 299 | 1098 | 800 | 1.1E-286 | – | |
| MobiDBLite | 313 | 332 | 20 | - | – | |
| MobiDBLite | 361 | 416 | 56 | - | – | |
| MobiDBLite | 363 | 380 | 18 | - | – | |
| MobiDBLite | 398 | 415 | 18 | - | – | |
| Gene3D | 436 | 692 | 257 | 6.1E-86 | – | |
| SUPERFAMILY | 466 | 694 | 229 | 7.3E-71 | ||
| CDD | 472 | 693 | 222 | 2.60593E-156 | – | |
| ProSiteProfiles | 483 | 511 | 29 | 9.649 | ||
| SMART | 502 | 707 | 206 | 5.7E-61 | ||
| Pfam | 508 | 679 | 172 | 6.6E-49 | ||
| ProSiteProfiles | 514 | 692 | 179 | 32.987 | ||
| SUPERFAMILY | 630 | 865 | 236 | 1.25E-54 | ||
| ProSitePatterns | 638 | 646 | 9 | - | ||
| Gene3D | 693 | 868 | 176 | 2.5E-51 | – | |
| ProSiteProfiles | 703 | 864 | 162 | 22.733 | ||
| CDD | 704 | 834 | 131 | 7.22064E-55 | – | |
| Pfam | 720 | 825 | 106 | 1.3E-26 | ||
| SMART | 744 | 825 | 82 | 2.5E-27 | ||
| MobiDBLite | 899 | 928 | 30 | - | – | |
| MobiDBLite | 899 | 913 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0079500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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