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LotjaGi1g1v0080300.1

Overview

Field Value
Gene ID LotjaGi1g1v0080300
Transcript ID LotjaGi1g1v0080300.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|V7CZG2|V7CZG2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:11598464..11604711) extracted from Lotus japonicus Gifu genome v1.2.

GTAGGTTTAGACTTTAGATGGTTCTAATTCGGCCCATGAACAACGAAGAAAGAAGCACCTTGCTTTTACTTCATTATTAC TTGTGTGTTCAGTTTCAGTGTTAAGGTGAGATCGGAAGATTCAAGAAAGAAGAAACAAAAAGAGGGTTTTGGTTTTCAAA TTTCATTCATTGATTGATTTTACAGAAGAAGAAAATAACACTAGGGTTTGTTCATGCGACTGTGACCTCGAAGAAGAATC GTTGAATTGGAAGAACAATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCT CTCGTGTTGCTCAGCATCGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGG TTCGTCGTTCAAAGGCACCGTTGATGTCACCAACAGTTACGCCGGTGAGTTAGTTAGTTACTATCATCAACTTCCAATTT CTCAATTTCAATTTTCCGTTGTTACTGTCACAAGAACTAACTCAATTTCTGTTTACAGTGCCGTTTGAAGAAGATGACAA GGACCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGGTACTTTAC TAAATAATTTCCTATTTTTATAATTGATGGTTATATCTAATTGATTGATTGTATCCCTGTTGAATAGCGTAGTGTGATAC ATATAGCTGACCTCACATAGTGAGATAAGGCTTTTGTTGTTGTTGTATCTCATTGATTGAATAATTTTTCACTTTGTTTA TTTTCCAGCGAAGGAGCATGTTGTGGGTTGGTATAGCACTGGTCCCAAACTGCGAGAAAATGACCTCGACGTTCATGGTT TATTCAATGAGTATGTTTGTTAACTGAATATGAATGCTGTCTTTTTAGCTTTACTGCAATTGGATGCTAGTATAGCTTTA GTGTCATTGCATGACTAAGGTGTGAAAATAGAGTGGTGCCTCTGCATGATAGGGCTACAGCGCATAATAAGATAACAACA GCACTGTATATGAGATTCATAAGTTCCCTTAGATATGCCTACTTCTCTTATGCAAAATACTACAAGCAAGACTCACACTT TATTGTGTTTCAGCAATCAATACCTTGATGCTTGCTCCTGAAAATAGTTTGTGTTATTGTGATTAGATTTTACTATGATT TTTGCTTGCACCATAAGTTAATCCTTTTTCATTAGGCATTGTTTGTGAGTTTTTAGGGTAGGGAAAGGGAAAGGCTTTCA GGGGAAGGGAGGGGAATGTTAGAATTTTGGGTCACAAATGTAACATTTAAATGTGTTAAAGTCATTATTTAATTAGCCAA AACTAAAGTGCTCTATTTGATATTGATTTTATGGCTAAGGGCATTTGTGTTATGAAAGGGTATTGTGTAGATACCATAAG GCAATATTCTAATTTGGCGCAATATTCTAATTTGATGAGGTGCCAAATTAGAAATATTGAAAACTGAGATGTAACGTAAG GCAATTGTGTTATGGTCCTCATTTGTAGACACGTAGAAACAAATGCTCTATCTTCATCCCCATGACCCTATCAGAAGAAA ATATTAGGAAATTCTAAGGTGATCTACCACTGGAAGATCACAATCCCAAACCTTCAACAATTCCCAATGGCAAATTTATG TACGCTTCCGTTTTCTATTCTTAATTGTTAGAAATCAACAAGTGGCATCAGAGTCATCCATACTTGATTTAGGTGTGAAT TTTGGTAATTCTTTATATTAGGGTTCTAAAATAAGTTTAGATATAACTGTAATTCATCAAACAGTTTCGTTTTTTGAATG ATTATGGATATCACGTATTTATTATATTTATATGGATACATATATTATATATTTTGTCAAGAATTACCAAAATTCACACA TGAATCAAGTATGGATGACTCTGATACCACTTGTTGATTTCTAACAATCAAGGTTTTGTTCCTAACCACATGTTTCTACC ATATAGAAAATAAGAAAAAGCATAATTTTAAAATCAATTCTTGATGAACTCATACCCGAATTCAAGATGAAAATAGAAAA CAGGAGCGTGTCTAAATTTGCCATTGTGAATGGTTGAAGGTTTGGGATTGTGATCTTTTAGTTGTAGACCACCTTAGGGT TTCCTAATATTCTCAACTGATGGGGATGAAGAGAGCGTTTGTTTGTACGTGTCTACAAATGGAGACCATAACCCATATAA GTACCTACCTTTAGTTACATCTCAGTTTTCAATATTTCTAATTTGGCCCCTCATCAAATTAGAATATTGCCTAATGGTAT CTACACAATTCGCTTTCATAACACATGCTCTTAACCATAAAATCAATATCAAGTAGACCACTTTAGTTTTAGCTAATTAA ATAATGGCTTTGACACATTTAAATGTTATATTTGTGACCCAAAATTCTAACAGGGAGGGCAAGTGACGGGGAAGGGGGCC CTTCCCTTCTTTGCAAGTTCCAAATTTCTATAACCCCTAATTTGGGGGAACTCCACAAAACAATTAAAGGAGGGTCTTTG AGGGTTTTCAAAAATTCCCCAAACCCTTCCCCCTTCTTAAAATCTCCCAGACAAGGGGAGGGCTTCTCATAAGCATCCCC TCCCCCCAAAACTCAACTCACAAACACACCCTTAGTTGTTATAGAACAAGAGATTCTGCATGTTGTTTTTATACCTTGTT AATCTTCATCTCAATCATGTTCTGTGTTGCAGTTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGGAACCTAAAGA GTTGGGAATTCCTACGAAAGCTTACTATACTGTTGAAGAGGTCAAAGAGGTAGAACGGAAGTACCTTTTTTTGTTGCTTA AAGATTTAGTATTTTACACTTCTGAATTTATTTATTTTACTTGTTGCAAATTCTGCGTTATGTGATGGCAGGAGTTAGTA TTTTCTTGAAATCTATCCGTAGGTCTAGGAACTCACATATGGTTTATTTTGAATTCAGAATGCTACTCAGAAAAGCCAAA AGGTCTTTGTGCATGTACAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGTATTCCATGAAATGCAAATCTGCTA CATTCTCTTTATTTGTTTTATTTGGTTTCATTATCAACCTTCTTTAATCAATACTAAATCATAGAATATCATCCACATGG TTCATGATAGTCTAAACAATTTATCCTGTGTTTTTAAAGTCTTCTTGCCTCTTTGCAGGAGTTGAACACTTGCTTAGAGA TGTGAAGGATACAACCATTAGCACCCTCGCAACAGAGGTGCTCTTCTTGATACTTGTTATATTATTATGTCTTTTGTATT TGTTTATAGTTCTGTAGTCCTGCCTTGAATGCTTTATTTTTAGATGAGTATCTTATATGATTCTTTTCTAACATAACAAC AAATGCTGGCATTTTTTTTTATGTAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTAAAGAGATA AGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGTTGGTTTACA TATTCTTTCTTAGTAACCACTGATTCTTTGGCTTTTATCAAATGGTCCAGGAATTTAGGTTTTCTGCTTATCCACTCTAT CTATTTAATTCAAAAATGGTTTTTGAAAATCAATTTTTTTGACATTAAGGACTGGAAAAATAAGTACTGAAATGATCCGA TTATTTGACTTGTTTTCGAGTTTTCTTTGTTTTATAAAGGAAGCTTTCTTTAGTCTCTTTTGTTTTTTGCCGGGTTTGCT CTTCATTATCCTGTTTAACCATCTCTTTTTTTTTATTAGGATGTATTTAACCTGTTGCCGAATCTTAATGTCTCTGACCT GATCAAGGCTTTCGCAGGTTAAGAATGTTAATTATGTTAAGTTTAAATGTTTAATGTGAGTTATGATAAATTCAAAAACA ATTACCTTTCAAAATTGTTGATCCCTGTCCTCATTGTGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTATCGT CTCTCATTAGAAGTGTGATTGCACTCCACAACTTGATTAACAACAAGGTGAGATACACTATGGTGAATTATCTTGCAAGT ATTTATTATTGATGTTTGCTTAATTTGGTTTTATATTTATTGGTTGTTAATATATTGTGAAAATAACAATTTTAGAAATG TTAAAGCGAAAATCCAGTCAGTCCTCCTTTTAAGGGTTTTGCTATGCCTCATTTCTTGAGCCTCAGTCAAGTAACATGTG ATAATTTGTTTGGAATTACTTACCTTCAATTAAACTCAAGTTTAGTATGTAGGTCTTTGATACGTTAGATAAGTTTGTCA AGTGAAACATGTTGTAAATCAATTACTTTCAAATGTCTTTGCATTGGAATATCATTTCAGATGCTCAACAAAGAACATGA AAGGGCAGAAGACTCAAAATCAGTGCCTGTACCAAGTGCAGCAGCAAGTTGAGGTTTGGGAGGGTTGTGATGCTTGGAGC TCTATGAGCACCATAATTTAAATTCATGGACCAAGAGGATAGCACTTTTCGGCTCACTAATGCTGGTCTACTTGAGCATT GCTGCATTGATTTGGGAAATACATGTAATATGGCACAATGTTCTTCTTACACTAGGAATGCTGTTGCTTCCGCGCATAGT TTATTTATTATATATTCTAATTTTCTTGCTTTTTTTCTTTCTTTCAAGTTATCGATTATCTGATAGCTTCCTTTACCGTT ATAAGATTAATTCCCATTTACTAGAAGTTTCATTCCCATTAGTTTTAGTGATATTACAGGGAAGGTGTATAAATTATGAC ATCTTAACTTGCTTGTCGGCACTGCTGCACGGGGTCAATTGATTTAGTGTGTACGTCGTGAAAGTACATTTATCCCAATT CATTGAAGAATTCTGTTCATTTTTCACCTTGAAGTGAGTACTAACGCTTTGACCCCAAGGACTCTCCAAATGGACCGCGA TGTGACCATAGATTTTCAAATATCTACCAGGAGAACAAGATCTTAATCACCCAAACATGTAAACAGCCAAATTAGTTGTG GTATAAGCAAGGACTTTCAAATTTAGAATGGACATCTAAGAACTAAATTGATTAGATTGGACCCACTAAAGTTCTATCAA GTGAATATACTTATACTGTTATATATCCCTCTGCAAAGGGAAAATGAAAACCTTTGACAAAGAAAAAAGAAATACAGAAG TTGTTACATTTACATGTCCAAGTGTGAAGACTATATATCTATACCTCAGTTGAATACAAGTTGTAAAGCCAAAATCGAAG ATCAAAACCTGAATATCAATCAATCCTCCTCCTCTGTATCATCAGATAGAACCGATTGCTCAAAATCAGCATCCATAATA ACCCCATCAATGACATGAACAACAATCTCCTTCTTCCTAACATCTACTATTTCTGATCGAATCCTATTAACAACAAGCAT CCCATCGATATCTTTTGCAATGTACAAGGGAAACCCAGACACAGAATCATACGACACAAGCTCACCAAAACGCACAGTAT CAGAAGAAAGTGCACGAGACACAGCTGAGAATCCCAATACACGAGAAACAATTGCATATGTATCATTGAACCTGTCAGAC TTCAAGCTATCATTCACCCGCAGATGCAGATCACGCTTGAAAGCTTCCTCAGAAGGAACAAACACAGTGAAAGCAAGATC TTGAGGCAACATGTCCACCATCATTTCACCAAACTTGCCCAAGCTAACACCTTGCAGGGACACTTTTCTGGACCTGATTT TTGGGTTAAACTGAAACCCCATTTCGTTGTTCTTGGTTTGTGCATCTGGAAGCTTAAGAACTGTCACGATCAGAATCAAA AGGCAGCAAACACATACCAGCATGGTTACAAGAGCTATTGAATGCTTCACGATCTGACGCTTCCTCATTTGATTGGACCC AGAATCTAAGAAGCGAAATAGTTGCTATTCTTGAATTGAAGTTATCAACTTTTCACCAAATCACGATCAATGAAACCCAA AGTTCGAGCTTTTAATGCTGAAGACTCAAGTCATACATAGCAAATGAAACTGGTAGAATATAATATTATAATATTCCTTT TTTATTTATTTTGATGTAATTATGTAATTACGCACGTAATCTTGCTTAAAATTATTCCCTAATTAACTACTTATGACCTT TGTGTATT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0080300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCTCTCGTGTTGCTCAGCAT CGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGTTCGTCGTTCAAAGGCA CCGTTGATGTCACCAACAGTTACGCCGTGCCGTTTGAAGAAGATGACAAGGACCCTAGCATCTGGTTTCTTGACCACAAT TACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCGAAGGAGCATGTTGTGGGTTGGTATAGCACTGGTCCCAA ACTGCGAGAAAATGACCTCGACGTTCATGGTTTATTCAATGATTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGG AACCTAAAGAGTTGGGAATTCCTACGAAAGCTTACTATACTGTTGAAGAGGTCAAAGAGAATGCTACTCAGAAAAGCCAA AAGGTCTTTGTGCATGTACAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTTGAACACTTGCTTAGAGATGT GAAGGATACAACCATTAGCACCCTCGCAACAGAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTA AAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGAT GTATTTAACCTGTTGCCGAATCTTAATGTCTCTGACCTGATCAAGGCTTTCGCAGTGAAAACAAATGATATGATGCTAGT AATATACCTATCGTCTCTCATTAGAAGTGTGATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATG AAAGGGCAGAAGACTCAAAATCAGTGCCTGTACCAAGTGCAGCAGCAAGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0080300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVIKTQQISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHN YHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYTVEEVKENATQKSQ KVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAAAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 263 263 - –
PANTHER
PTHR10540:SF17
2 309 308 1.6E-199 –
PANTHER
PTHR10540
2 309 308 1.6E-199 –
Gene3D
G3DSA:3.40.140.10
9 193 185 3.5E-75 –
Pfam
PF01398
13 124 112 4.6E-30
IPR000555
CDD
cd08062
15 295 281 0.0
IPR033858
SMART
SM00232
16 150 135 6.3E-28
IPR000555
ProSiteProfiles
PS50249
17 151 135 19.688
IPR037518
Pfam
PF13012
174 285 112 1.7E-37
IPR024969
Phobius
TRANSMEMBRANE
264 284 21 - –
Phobius
CYTOPLASMIC_DOMAIN
285 310 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005838
Cellular component Proteasome regulatory particle A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0080300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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