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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0080300 |
Transcript ID | LotjaGi1g1v0080300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.2 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11598721..11602762) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCTCTCGTGTTGCTCAGCAT CGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGTTCGTCGTTCAAAGGCA CCGTTGATGTCACCAACAGTTACGCCGGTGAGTTAGTTAGTTACTATCATCAACTTCCAATTTCTCAATTTCAATTTTCC GTTGTTACTGTCACAAGAACTAACTCAATTTCTGTTTACAGTGCCGTTTGAAGAAGATGACAAGGACCCTAGCATCTGGT TTCTTGACCACAATTACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGGTACTTTACTAAATAATTTCCTATTT TTATAATTGATGGTTATATCTAATTGATTGATTGTATCCCTGTTGAATAGCGTAGTGTGATACATATAGCTGACCTCACA TAGTGAGATAAGGCTTTTGTTGTTGTTGTATCTCATTGATTGAATAATTTTTCACTTTGTTTATTTTCCAGCGAAGGAGC ATGTTGTGGGTTGGTATAGCACTGGTCCCAAACTGCGAGAAAATGACCTCGACGTTCATGGTTTATTCAATGAGTATGTT TGTTAACTGAATATGAATGCTGTCTTTTTAGCTTTACTGCAATTGGATGCTAGTATAGCTTTAGTGTCATTGCATGACTA AGGTGTGAAAATAGAGTGGTGCCTCTGCATGATAGGGCTACAGCGCATAATAAGATAACAACAGCACTGTATATGAGATT CATAAGTTCCCTTAGATATGCCTACTTCTCTTATGCAAAATACTACAAGCAAGACTCACACTTTATTGTGTTTCAGCAAT CAATACCTTGATGCTTGCTCCTGAAAATAGTTTGTGTTATTGTGATTAGATTTTACTATGATTTTTGCTTGCACCATAAG TTAATCCTTTTTCATTAGGCATTGTTTGTGAGTTTTTAGGGTAGGGAAAGGGAAAGGCTTTCAGGGGAAGGGAGGGGAAT GTTAGAATTTTGGGTCACAAATGTAACATTTAAATGTGTTAAAGTCATTATTTAATTAGCCAAAACTAAAGTGCTCTATT TGATATTGATTTTATGGCTAAGGGCATTTGTGTTATGAAAGGGTATTGTGTAGATACCATAAGGCAATATTCTAATTTGG CGCAATATTCTAATTTGATGAGGTGCCAAATTAGAAATATTGAAAACTGAGATGTAACGTAAGGCAATTGTGTTATGGTC CTCATTTGTAGACACGTAGAAACAAATGCTCTATCTTCATCCCCATGACCCTATCAGAAGAAAATATTAGGAAATTCTAA GGTGATCTACCACTGGAAGATCACAATCCCAAACCTTCAACAATTCCCAATGGCAAATTTATGTACGCTTCCGTTTTCTA TTCTTAATTGTTAGAAATCAACAAGTGGCATCAGAGTCATCCATACTTGATTTAGGTGTGAATTTTGGTAATTCTTTATA TTAGGGTTCTAAAATAAGTTTAGATATAACTGTAATTCATCAAACAGTTTCGTTTTTTGAATGATTATGGATATCACGTA TTTATTATATTTATATGGATACATATATTATATATTTTGTCAAGAATTACCAAAATTCACACATGAATCAAGTATGGATG ACTCTGATACCACTTGTTGATTTCTAACAATCAAGGTTTTGTTCCTAACCACATGTTTCTACCATATAGAAAATAAGAAA AAGCATAATTTTAAAATCAATTCTTGATGAACTCATACCCGAATTCAAGATGAAAATAGAAAACAGGAGCGTGTCTAAAT TTGCCATTGTGAATGGTTGAAGGTTTGGGATTGTGATCTTTTAGTTGTAGACCACCTTAGGGTTTCCTAATATTCTCAAC TGATGGGGATGAAGAGAGCGTTTGTTTGTACGTGTCTACAAATGGAGACCATAACCCATATAAGTACCTACCTTTAGTTA CATCTCAGTTTTCAATATTTCTAATTTGGCCCCTCATCAAATTAGAATATTGCCTAATGGTATCTACACAATTCGCTTTC ATAACACATGCTCTTAACCATAAAATCAATATCAAGTAGACCACTTTAGTTTTAGCTAATTAAATAATGGCTTTGACACA TTTAAATGTTATATTTGTGACCCAAAATTCTAACAGGGAGGGCAAGTGACGGGGAAGGGGGCCCTTCCCTTCTTTGCAAG TTCCAAATTTCTATAACCCCTAATTTGGGGGAACTCCACAAAACAATTAAAGGAGGGTCTTTGAGGGTTTTCAAAAATTC CCCAAACCCTTCCCCCTTCTTAAAATCTCCCAGACAAGGGGAGGGCTTCTCATAAGCATCCCCTCCCCCCAAAACTCAAC TCACAAACACACCCTTAGTTGTTATAGAACAAGAGATTCTGCATGTTGTTTTTATACCTTGTTAATCTTCATCTCAATCA TGTTCTGTGTTGCAGTTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGGAACCTAAAGAGTTGGGAATTCCTACGA AAGCTTACTATACTGTTGAAGAGGTCAAAGAGGTAGAACGGAAGTACCTTTTTTTGTTGCTTAAAGATTTAGTATTTTAC ACTTCTGAATTTATTTATTTTACTTGTTGCAAATTCTGCGTTATGTGATGGCAGGAGTTAGTATTTTCTTGAAATCTATC CGTAGGTCTAGGAACTCACATATGGTTTATTTTGAATTCAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTA CAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGTATTCCATGAAATGCAAATCTGCTACATTCTCTTTATTTGTT TTATTTGGTTTCATTATCAACCTTCTTTAATCAATACTAAATCATAGAATATCATCCACATGGTTCATGATAGTCTAAAC AATTTATCCTGTGTTTTTAAAGTCTTCTTGCCTCTTTGCAGGAGTTGAACACTTGCTTAGAGATGTGAAGGATACAACCA TTAGCACCCTCGCAACAGAGGTGCTCTTCTTGATACTTGTTATATTATTATGTCTTTTGTATTTGTTTATAGTTCTGTAG TCCTGCCTTGAATGCTTTATTTTTAGATGAGTATCTTATATGATTCTTTTCTAACATAACAACAAATGCTGGCATTTTTT TTTATGTAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTAAAGAGATAAGAAGTTACCTTGACCT TGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGTTGGTTTACATATTCTTTCTTAGTAAC CACTGATTCTTTGGCTTTTATCAAATGGTCCAGGAATTTAGGTTTTCTGCTTATCCACTCTATCTATTTAATTCAAAAAT GGTTTTTGAAAATCAATTTTTTTGACATTAAGGACTGGAAAAATAAGTACTGAAATGATCCGATTATTTGACTTGTTTTC GAGTTTTCTTTGTTTTATAAAGGAAGCTTTCTTTAGTCTCTTTTGTTTTTTGCCGGGTTTGCTCTTCATTATCCTGTTTA ACCATCTCTTTTTTTTTATTAGGATGTATTTAACCTGTTGCCGAATCTTAATGTCTCTGACCTGATCAAGGCTTTCGCAG GTTAAGAATGTTAATTATGTTAAGTTTAAATGTTTAATGTGAGTTATGATAAATTCAAAAACAATTACCTTTCAAAATTG TTGATCCCTGTCCTCATTGTGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTATCGTCTCTCATTAGAAGTGTG ATTGCACTCCACAACTTGATTAACAACAAGGTGAGATACACTATGGTGAATTATCTTGCAAGTATTTATTATTGATGTTT GCTTAATTTGGTTTTATATTTATTGGTTGTTAATATATTGTGAAAATAACAATTTTAGAAATGTTAAAGCGAAAATCCAG TCAGTCCTCCTTTTAAGGGTTTTGCTATGCCTCATTTCTTGA
CDS sequence (LotjaGi1g1v0080300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCTCTCGTGTTGCTCAGCAT CGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGTTCGTCGTTCAAAGGCA CCGTTGATGTCACCAACAGTTACGCCGTGCCGTTTGAAGAAGATGACAAGGACCCTAGCATCTGGTTTCTTGACCACAAT TACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCGAAGGAGCATGTTGTGGGTTGGTATAGCACTGGTCCCAA ACTGCGAGAAAATGACCTCGACGTTCATGGTTTATTCAATGATTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGG AACCTAAAGAGTTGGGAATTCCTACGAAAGCTTACTATACTGTTGAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTT GTGCATGTACAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTTGAACACTTGCTTAGAGATGTGAAGGATAC AACCATTAGCACCCTCGCAACAGAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTAAAGAGATAA GAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGATGTATTTAAC CTGTTGCCGAATCTTAATGTCTCTGACCTGATCAAGGCTTTCGCAGTGAAAACAAATGATATGATGCTAGTAATATACCT ATCGTCTCTCATTAGAAGTGTGATTGCACTCCACAACTTGATTAACAACAAGAAATGTTAA
Protein sequence (LotjaGi1g1v0080300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVIKTQQISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHN YHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYTVEENATQKSQKVF VHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFN LLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 260 | 260 | - | – | |
PANTHER | 2 | 284 | 283 | 6.7E-186 | – | |
PANTHER | 2 | 284 | 283 | 6.7E-186 | – | |
Gene3D | 9 | 190 | 182 | 7.8E-74 | – | |
Pfam | 13 | 124 | 112 | 3.8E-30 | ||
CDD | 15 | 284 | 270 | 0.0 | ||
SMART | 16 | 150 | 135 | 6.3E-28 | ||
ProSiteProfiles | 17 | 151 | 135 | 19.506 | ||
Pfam | 171 | 282 | 112 | 1.4E-37 | ||
Phobius | 261 | 281 | 21 | - | – | |
Phobius | 282 | 286 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Proteasome regulatory particle | A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. |
Expression pattern of LotjaGi1g1v0080300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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