Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0080300 |
| Transcript ID | LotjaGi1g1v0080300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11598721..11602762) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCTCTCGTGTTGCTCAGCAT CGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGTTCGTCGTTCAAAGGCA CCGTTGATGTCACCAACAGTTACGCCGGTGAGTTAGTTAGTTACTATCATCAACTTCCAATTTCTCAATTTCAATTTTCC GTTGTTACTGTCACAAGAACTAACTCAATTTCTGTTTACAGTGCCGTTTGAAGAAGATGACAAGGACCCTAGCATCTGGT TTCTTGACCACAATTACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGGTACTTTACTAAATAATTTCCTATTT TTATAATTGATGGTTATATCTAATTGATTGATTGTATCCCTGTTGAATAGCGTAGTGTGATACATATAGCTGACCTCACA TAGTGAGATAAGGCTTTTGTTGTTGTTGTATCTCATTGATTGAATAATTTTTCACTTTGTTTATTTTCCAGCGAAGGAGC ATGTTGTGGGTTGGTATAGCACTGGTCCCAAACTGCGAGAAAATGACCTCGACGTTCATGGTTTATTCAATGAGTATGTT TGTTAACTGAATATGAATGCTGTCTTTTTAGCTTTACTGCAATTGGATGCTAGTATAGCTTTAGTGTCATTGCATGACTA AGGTGTGAAAATAGAGTGGTGCCTCTGCATGATAGGGCTACAGCGCATAATAAGATAACAACAGCACTGTATATGAGATT CATAAGTTCCCTTAGATATGCCTACTTCTCTTATGCAAAATACTACAAGCAAGACTCACACTTTATTGTGTTTCAGCAAT CAATACCTTGATGCTTGCTCCTGAAAATAGTTTGTGTTATTGTGATTAGATTTTACTATGATTTTTGCTTGCACCATAAG TTAATCCTTTTTCATTAGGCATTGTTTGTGAGTTTTTAGGGTAGGGAAAGGGAAAGGCTTTCAGGGGAAGGGAGGGGAAT GTTAGAATTTTGGGTCACAAATGTAACATTTAAATGTGTTAAAGTCATTATTTAATTAGCCAAAACTAAAGTGCTCTATT TGATATTGATTTTATGGCTAAGGGCATTTGTGTTATGAAAGGGTATTGTGTAGATACCATAAGGCAATATTCTAATTTGG CGCAATATTCTAATTTGATGAGGTGCCAAATTAGAAATATTGAAAACTGAGATGTAACGTAAGGCAATTGTGTTATGGTC CTCATTTGTAGACACGTAGAAACAAATGCTCTATCTTCATCCCCATGACCCTATCAGAAGAAAATATTAGGAAATTCTAA GGTGATCTACCACTGGAAGATCACAATCCCAAACCTTCAACAATTCCCAATGGCAAATTTATGTACGCTTCCGTTTTCTA TTCTTAATTGTTAGAAATCAACAAGTGGCATCAGAGTCATCCATACTTGATTTAGGTGTGAATTTTGGTAATTCTTTATA TTAGGGTTCTAAAATAAGTTTAGATATAACTGTAATTCATCAAACAGTTTCGTTTTTTGAATGATTATGGATATCACGTA TTTATTATATTTATATGGATACATATATTATATATTTTGTCAAGAATTACCAAAATTCACACATGAATCAAGTATGGATG ACTCTGATACCACTTGTTGATTTCTAACAATCAAGGTTTTGTTCCTAACCACATGTTTCTACCATATAGAAAATAAGAAA AAGCATAATTTTAAAATCAATTCTTGATGAACTCATACCCGAATTCAAGATGAAAATAGAAAACAGGAGCGTGTCTAAAT TTGCCATTGTGAATGGTTGAAGGTTTGGGATTGTGATCTTTTAGTTGTAGACCACCTTAGGGTTTCCTAATATTCTCAAC TGATGGGGATGAAGAGAGCGTTTGTTTGTACGTGTCTACAAATGGAGACCATAACCCATATAAGTACCTACCTTTAGTTA CATCTCAGTTTTCAATATTTCTAATTTGGCCCCTCATCAAATTAGAATATTGCCTAATGGTATCTACACAATTCGCTTTC ATAACACATGCTCTTAACCATAAAATCAATATCAAGTAGACCACTTTAGTTTTAGCTAATTAAATAATGGCTTTGACACA TTTAAATGTTATATTTGTGACCCAAAATTCTAACAGGGAGGGCAAGTGACGGGGAAGGGGGCCCTTCCCTTCTTTGCAAG TTCCAAATTTCTATAACCCCTAATTTGGGGGAACTCCACAAAACAATTAAAGGAGGGTCTTTGAGGGTTTTCAAAAATTC CCCAAACCCTTCCCCCTTCTTAAAATCTCCCAGACAAGGGGAGGGCTTCTCATAAGCATCCCCTCCCCCCAAAACTCAAC TCACAAACACACCCTTAGTTGTTATAGAACAAGAGATTCTGCATGTTGTTTTTATACCTTGTTAATCTTCATCTCAATCA TGTTCTGTGTTGCAGTTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGGAACCTAAAGAGTTGGGAATTCCTACGA AAGCTTACTATACTGTTGAAGAGGTCAAAGAGGTAGAACGGAAGTACCTTTTTTTGTTGCTTAAAGATTTAGTATTTTAC ACTTCTGAATTTATTTATTTTACTTGTTGCAAATTCTGCGTTATGTGATGGCAGGAGTTAGTATTTTCTTGAAATCTATC CGTAGGTCTAGGAACTCACATATGGTTTATTTTGAATTCAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTA CAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGTATTCCATGAAATGCAAATCTGCTACATTCTCTTTATTTGTT TTATTTGGTTTCATTATCAACCTTCTTTAATCAATACTAAATCATAGAATATCATCCACATGGTTCATGATAGTCTAAAC AATTTATCCTGTGTTTTTAAAGTCTTCTTGCCTCTTTGCAGGAGTTGAACACTTGCTTAGAGATGTGAAGGATACAACCA TTAGCACCCTCGCAACAGAGGTGCTCTTCTTGATACTTGTTATATTATTATGTCTTTTGTATTTGTTTATAGTTCTGTAG TCCTGCCTTGAATGCTTTATTTTTAGATGAGTATCTTATATGATTCTTTTCTAACATAACAACAAATGCTGGCATTTTTT TTTATGTAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTAAAGAGATAAGAAGTTACCTTGACCT TGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGTTGGTTTACATATTCTTTCTTAGTAAC CACTGATTCTTTGGCTTTTATCAAATGGTCCAGGAATTTAGGTTTTCTGCTTATCCACTCTATCTATTTAATTCAAAAAT GGTTTTTGAAAATCAATTTTTTTGACATTAAGGACTGGAAAAATAAGTACTGAAATGATCCGATTATTTGACTTGTTTTC GAGTTTTCTTTGTTTTATAAAGGAAGCTTTCTTTAGTCTCTTTTGTTTTTTGCCGGGTTTGCTCTTCATTATCCTGTTTA ACCATCTCTTTTTTTTTATTAGGATGTATTTAACCTGTTGCCGAATCTTAATGTCTCTGACCTGATCAAGGCTTTCGCAG GTTAAGAATGTTAATTATGTTAAGTTTAAATGTTTAATGTGAGTTATGATAAATTCAAAAACAATTACCTTTCAAAATTG TTGATCCCTGTCCTCATTGTGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTATCGTCTCTCATTAGAAGTGTG ATTGCACTCCACAACTTGATTAACAACAAGGTGAGATACACTATGGTGAATTATCTTGCAAGTATTTATTATTGATGTTT GCTTAATTTGGTTTTATATTTATTGGTTGTTAATATATTGTGAAAATAACAATTTTAGAAATGTTAAAGCGAAAATCCAG TCAGTCCTCCTTTTAAGGGTTTTGCTATGCCTCATTTCTTGA
CDS sequence (LotjaGi1g1v0080300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGATAAAGACGCAGCAGATTTCATCGAGAGCGATAGAGAAGGTGGTGGTGCACCCTCTCGTGTTGCTCAGCAT CGTCGATAACTACAACCGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGTTCGTCGTTCAAAGGCA CCGTTGATGTCACCAACAGTTACGCCGTGCCGTTTGAAGAAGATGACAAGGACCCTAGCATCTGGTTTCTTGACCACAAT TACCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCGAAGGAGCATGTTGTGGGTTGGTATAGCACTGGTCCCAA ACTGCGAGAAAATGACCTCGACGTTCATGGTTTATTCAATGATTATGTTCCAAATCCTGTTCTGGTTATAATTGATGTGG AACCTAAAGAGTTGGGAATTCCTACGAAAGCTTACTATACTGTTGAAGAGGTCAAAGAGAATGCTACTCAGAAAAGCCAA AAGGTCTTTGTGCATGTACAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTTGAACACTTGCTTAGAGATGT GAAGGATACAACCATTAGCACCCTCGCAACAGAGGTTAGTGCAAAACTCACAGCCTTAAAGGGTTTGGATGCAAGGCTTA AAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGAT GTATTTAACCTGTTGCCGAATCTTAATGTCTCTGACCTGATCAAGGCTTTCGCAGTGAAAACAAATGATATGATGCTAGT AATATACCTATCGTCTCTCATTAGAAGTGTGATTGCACTCCACAACTTGATTAACAACAAGAAATGTTAA
Protein sequence (LotjaGi1g1v0080300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVIKTQQISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHN YHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYTVEEVKENATQKSQ KVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 263 | 263 | - | – | |
| PANTHER | 2 | 287 | 286 | 5.6E-190 | – | |
| PANTHER | 2 | 287 | 286 | 5.6E-190 | – | |
| Gene3D | 9 | 193 | 185 | 2.8E-75 | – | |
| Pfam | 13 | 124 | 112 | 3.9E-30 | ||
| CDD | 15 | 287 | 273 | 0.0 | ||
| SMART | 16 | 150 | 135 | 6.3E-28 | ||
| ProSiteProfiles | 17 | 151 | 135 | 19.688 | ||
| Pfam | 174 | 285 | 112 | 1.4E-37 | ||
| Phobius | 264 | 284 | 21 | - | – | |
| Phobius | 285 | 289 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Proteasome regulatory particle | A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. |
Expression pattern of LotjaGi1g1v0080300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…