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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0084000 |
| Transcript ID | LotjaGi1g1v0084000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT5G05940.1 ROP guanine nucleotide exchange factor 5; Swiss-Prot: sp|F4K295|ROGF5_ARATH Rop guanine nucleotide exchange factor 5; TrEMBL-Plants: tr|A0A1J7GUE4|A0A1J7GUE4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0084000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12059434..12063540) extracted from Lotus japonicus Gifu genome v1.2.
TCAAAAAAATCAAATTGTTTATTAATATATTTGAACATAACCAGAAATTTGAGTTACACTGAGAGCGAAAGCTAAGAGAG ACGTTGAGGCATGGCATGTGGCAGTTGACACTCACACTCTCTTTTTGTATTTGATTTTGAAAAACTTAGCAGAATCTCCA ACAACCTTTTCTGAAAAAGCCATGATGTTCTTCTTCATGCCCTCACCTTTTCCATGATCTTGTGTCCACAGCAACCTCAA CGGTCCTTTCATGTACGAGAATCTATAAGACCTTGTTCCTCATAGTGTTTTTCAAACTCCTTGTAGCTATGGTGGTAGCT TTTGAGTGAGAGTGAGTCATTTTGAGTGTTTGTTACTTTGTTTTGCTGCTTCTCTGTTTTCCTTTCTGGGTTTCAAAGGA AAAGCTCTGTTGGTGAGGGAAAGTTGTTAAACATGGAAAGTTTGAGCAACAAGGGTGAAAATATGCAGAAGAAGAGAGAT GGGTATCGTTCACCTCGTTCTGCTGCTAAGGGAGCTAAGGTGGTTAACAAGTCCTTCACTGGTTCCAGTGGTGGGTCGTG CTCCTCTGTTTCAACTGAAGAACCTAAAGCGGCTAAAGGGTCTTCTCCTTCTCCTGCTCCTTCTCCTCTTGGTTGGCCTA TTCGGAAGGCTGCGGTTTCCAAACGTGGGAAATCAGATGAGAAAGAAAATGAACCTGTTTCTCACTTGGAAGATGCTAAA ATTACCAGTGTCAGTTCAAAAATGTCTGGTAAGATTTTTGTTAATGGCTTCCCATTTTGCTCTGTTTAGCACTAGAGAAT GGATGGTGAGTTGGGGACACAACAATGTTGGAAATATTTGAATGCTTATAGCATGTTTGGACCAATTTCTCTTTCTCAAG ATTCAATTCTATCAGCTAGAAGCCACTCAAATAAGCTTCTCAGAATTGATTTTGACTTCAGAATCAATTGTAGTAAGATT TTCAAATATGCTCTAGTAGGTTTTGAATTTTGGTGCTACTATTTTGTATTTTGAATATTGACCCCCTTTTAGTCAGTTTA GTTAATAATGTTTTTATTTGGCTGTTGTTTAATTACTGGGAAAATTGTTGGATCAGGGGTTGGTATGATGAAGGAAAGGT TTGCAAAATTGCTGCTTGGTGAAGATATGTCAGGATCTGGAAAAGGAGTTTGCACTGCTTTGGCCATCTCAAATGCCATC ACTAATCTGTGTGGTATGGTTTCTTTGTAACAGTGACATAGGCTCATGTTGTGTTTGAGAAAATGTTACACTTTCTGCAT TGGCAAATGCTTAAACTTTTCTGTTCTGGATTGAATATTAACGTTGTTGTAATAATTGATTCAATTTGGATTATTAATGC AAACATGTAGCAACTGTATTTGGACAATTATGGAGACTAGAACCTCTCCCTTGTGAAAAGAAAGCGATGTGGCGGCGAGA GATGGAGTGGCTGGTTTGTGTTAGTGATCACATTGTTGAGTTGATGCCTTCTTGGCAAACATTCCCAGATGGAAGTAAGC TAGAGGTATAATTGCATTGAGTTCTCATCTTTGACTTCATTTTTCTTTTAACCAATGGATTATCATTAGGCTCTTCCCTC TTTACACTGTTTCTAATCAACAGTGGTATTAGAATTGTGATGTTTCTATTAGTATGTTTGCATCTTAGAATCAATTCTGA CACCAGAAGCTTCTTCTCAGAATTGATTTTAACTTTAGAATCAATTGTAGAAAGATTTACAAACATACAATAACATGGTG TGTTCTGCAGGTAATGACTTGCAGGCCAAGGTCAGATCTTTTCATCAATCTGCCAGCTCTGCAGAAACTTGACAACATGC TTCTTGTAAGTATTGCATCTCATTCTTTCATGGTATACTAGTAACTGGTTGTTGGTAAGTAAATGATAAACAATTCTGAT TCTGAGGCTTTCATGTACATTATCACAGGACATTTTAGATAGTTACAAAGCTAAGGAGTTTTGGTATGTTGACCAAGGAA TTGTATCCCAAGATGCAGATGGATCAGCTTCTTTTCGCAAAAGAATTCAGCGAGAAGAGGAGAAGTGGTGGCTCCCCGTG CCTCGGGTTCCCCCTGCCGGTCTCAGTGACAACTCAAGAAAGCAGTTGAATCACACAAGAGAATGTGCAAGCCAAATACT GAAAGCAGCCATGAGTATCAATGGCAATGCTTTAGCTGAAATGGAAGTTCCTGAGTCATATCTGGAAGCCCTTCCTAAGG TCTGATTTCCAACATGAACAGAATTTGATATCTTTGTCTGATTAATACAACTAGGCAAAAAAGTAAATGTGATTGATCAA ATTCACTACAAATTTAGTAAGGAAACACTCATAGACTCTTAACTTTGCTTCATCATTAACTCAAGGAGCAAAAAGTATTT TATTAGAGCTAAGGTGGTTAAGACTCATAGACTCTTAACTTTCCACAACTGATTCTTAAACCAAAAATAATTAGGGGGAG AAGCTTCCGTGTGTCAGAATTGATTTTGAGGAAATAGAAACTAGTCCAAACTCCAAACATGCTAAAAATCTCTCATAATC TCTTTTTCTAGTCCTGCAGAGTTTCCAACCACACACTTCATACAGACTTATATGACATTGTTTTCAAATTTATATTTGGG TATTTCACAAAGAGTTCATTCAAGATACATGATACATTATCTGAACTTTCAGAATGGAAGAACTTGCTTGGGGGATTTTA TTTACCGTTACATCACATCAGAGCAATTCTCTTCGGAATGCCTGCTTGATTGCTTAGACCTCTCCTCTGAGCATGTTGCA CTAGAGATTGCTAACCGTGTTGAAGCTTCAATTCATGTATGGCGTCGAAGAGGTCACTCTAGACCCCCACCGAATCCTAG CCGTTCAACTACAAAGTCATCTTGGGAAATTGTCAAGGACTTCATGGCTGATGGAGACAAGAGAGAGTTGCTGGCAGAAA GAGCTGAAAATATTCTACTTTCATTGAAGCAGCGATTCCCGGGATTAACTCAAACTACCTTGGATACCAGCAAAATCCAG TGCAACAAGGTTACATTTCCCTTCTCTTTCTTTTTAATTGCAATTTTTCTCTCTTTCTATCACATTCATTGTATATCACA TCCTTTACTTCTCTCTTTTCTCTTTCTCACTCTGGATATCTGTCAAGTGTCTGCATTATACGAATGCCTACAAATAATTT TACTTGCATGATTGTAATCTTTCAATCACATTATCTAATTGTAATCTTTCTTTCAAAAGCCTTTATATTGACACATTTCA TTTCAAACATTCAGGATGTTGGAAAAGCCATCCTAGAGGGCTATTCAAGAGTTCTGGAGAGCATGGCATTTAACATTGTA GCTCGTATAGATGATTTGCTATATGTGGATGACTTGACAAAACATTCAGATAGGTTTCCATTGGTGCCACCGACAGTTAA TGTGGTTTCTCAGCAGAAGCTTTCGCGTTCAATGGCAGTGTCTGTCTCAGGCACTCCGCACAAAGCATTATCACCTGTGC CTCTAATTAGTCCGGCAAGGGGAGATAGAGAGAGAACTCCTTTCCTCAACATCAACAATAACAACATCATCAAACCTCAA CGTCGTGGCTTTGGCGTGCGAAGAGCGTTGTCAAATTATCTTGGAGGAGAGACCAAAGCAACAAAGATGTTTAGCAATGC AACTGAAGTTAATGGTACAAACCCAAATTGCAATAAAACAGAACAGCCAGAATGTCAGAAGGAATCGCATGACATGAGGA GCAAGACAAAATAATGGTTGTATAGGAAACAAGTTTATTAACCTGCAGAAACTTTTGTTAACATGTATGGCTCCCTTTCA TTGTATCATTTACAACTAGTATCTATTGTTAGTTGAAAAGAAGAAAACAATATCTGTTGTTAGTTGAAATAGGAATTCAT AGTTCATTGAGGTTATTACATTCTCTTACTGAAATATGTAATGGTCCAATTCATAGGACCAAATGTATCAATTAGAAGAT TGTATTCAGATTAAAATTATGCTGTTAGAGTTCATGATTTTCTTTATCTGCTACTTATTCTTTTAAGTGTGTTCTTCATT TTGTTTGGTAACCAAAATATTAGGGTG
CDS sequence (LotjaGi1g1v0084000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGTTTGAGCAACAAGGGTGAAAATATGCAGAAGAAGAGAGATGGGTATCGTTCACCTCGTTCTGCTGCTAAGGG AGCTAAGGTGGTTAACAAGTCCTTCACTGGTTCCAGTGGTGGGTCGTGCTCCTCTGTTTCAACTGAAGAACCTAAAGCGG CTAAAGGGTCTTCTCCTTCTCCTGCTCCTTCTCCTCTTGGTTGGCCTATTCGGAAGGCTGCGGTTTCCAAACGTGGGAAA TCAGATGAGAAAGAAAATGAACCTGTTTCTCACTTGGAAGATGCTAAAATTACCAGTGTCAGTTCAAAAATGTCTGGGGT TGGTATGATGAAGGAAAGGTTTGCAAAATTGCTGCTTGGTGAAGATATGTCAGGATCTGGAAAAGGAGTTTGCACTGCTT TGGCCATCTCAAATGCCATCACTAATCTGTGTGCAACTGTATTTGGACAATTATGGAGACTAGAACCTCTCCCTTGTGAA AAGAAAGCGATGTGGCGGCGAGAGATGGAGTGGCTGGTTTGTGTTAGTGATCACATTGTTGAGTTGATGCCTTCTTGGCA AACATTCCCAGATGGAAGTAAGCTAGAGGTAATGACTTGCAGGCCAAGGTCAGATCTTTTCATCAATCTGCCAGCTCTGC AGAAACTTGACAACATGCTTCTTGACATTTTAGATAGTTACAAAGCTAAGGAGTTTTGGTATGTTGACCAAGGAATTGTA TCCCAAGATGCAGATGGATCAGCTTCTTTTCGCAAAAGAATTCAGCGAGAAGAGGAGAAGTGGTGGCTCCCCGTGCCTCG GGTTCCCCCTGCCGGTCTCAGTGACAACTCAAGAAAGCAGTTGAATCACACAAGAGAATGTGCAAGCCAAATACTGAAAG CAGCCATGAGTATCAATGGCAATGCTTTAGCTGAAATGGAAGTTCCTGAGTCATATCTGGAAGCCCTTCCTAAGAATGGA AGAACTTGCTTGGGGGATTTTATTTACCGTTACATCACATCAGAGCAATTCTCTTCGGAATGCCTGCTTGATTGCTTAGA CCTCTCCTCTGAGCATGTTGCACTAGAGATTGCTAACCGTGTTGAAGCTTCAATTCATGTATGGCGTCGAAGAGGTCACT CTAGACCCCCACCGAATCCTAGCCGTTCAACTACAAAGTCATCTTGGGAAATTGTCAAGGACTTCATGGCTGATGGAGAC AAGAGAGAGTTGCTGGCAGAAAGAGCTGAAAATATTCTACTTTCATTGAAGCAGCGATTCCCGGGATTAACTCAAACTAC CTTGGATACCAGCAAAATCCAGTGCAACAAGGATGTTGGAAAAGCCATCCTAGAGGGCTATTCAAGAGTTCTGGAGAGCA TGGCATTTAACATTGTAGCTCGTATAGATGATTTGCTATATGTGGATGACTTGACAAAACATTCAGATAGGTTTCCATTG GTGCCACCGACAGTTAATGTGGTTTCTCAGCAGAAGCTTTCGCGTTCAATGGCAGTGTCTGTCTCAGGCACTCCGCACAA AGCATTATCACCTGTGCCTCTAATTAGTCCGGCAAGGGGAGATAGAGAGAGAACTCCTTTCCTCAACATCAACAATAACA ACATCATCAAACCTCAACGTCGTGGCTTTGGCGTGCGAAGAGCGTTGTCAAATTATCTTGGAGGAGAGACCAAAGCAACA AAGATGTTTAGCAATGCAACTGAAGTTAATGGTACAAACCCAAATTGCAATAAAACAGAACAGCCAGAATGTCAGAAGGA ATCGCATGACATGAGGAGCAAGACAAAATAA
Protein sequence (LotjaGi1g1v0084000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESLSNKGENMQKKRDGYRSPRSAAKGAKVVNKSFTGSSGGSCSSVSTEEPKAAKGSSPSPAPSPLGWPIRKAAVSKRGK SDEKENEPVSHLEDAKITSVSSKMSGVGMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPCE KKAMWRREMEWLVCVSDHIVELMPSWQTFPDGSKLEVMTCRPRSDLFINLPALQKLDNMLLDILDSYKAKEFWYVDQGIV SQDADGSASFRKRIQREEEKWWLPVPRVPPAGLSDNSRKQLNHTRECASQILKAAMSINGNALAEMEVPESYLEALPKNG RTCLGDFIYRYITSEQFSSECLLDCLDLSSEHVALEIANRVEASIHVWRRRGHSRPPPNPSRSTTKSSWEIVKDFMADGD KRELLAERAENILLSLKQRFPGLTQTTLDTSKIQCNKDVGKAILEGYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPL VPPTVNVVSQQKLSRSMAVSVSGTPHKALSPVPLISPARGDRERTPFLNINNNNIIKPQRRGFGVRRALSNYLGGETKAT KMFSNATEVNGTNPNCNKTEQPECQKESHDMRSKTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 95 | 95 | - | – | |
| MobiDBLite | 7 | 22 | 16 | - | – | |
| MobiDBLite | 32 | 54 | 23 | - | – | |
| PANTHER | 48 | 511 | 464 | 8.7E-260 | ||
| PANTHER | 48 | 511 | 464 | 8.7E-260 | – | |
| MobiDBLite | 75 | 92 | 18 | - | – | |
| ProSiteProfiles | 97 | 479 | 383 | 118.371 | ||
| Gene3D | 99 | 246 | 148 | 1.9E-68 | – | |
| Pfam | 107 | 473 | 367 | 1.7E-184 | ||
| Gene3D | 254 | 469 | 216 | 1.3E-78 | – | |
| Gene3D | 308 | 436 | 129 | 1.3E-78 | – | |
| MobiDBLite | 568 | 596 | 29 | - | – | |
| MobiDBLite | 582 | 596 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0084000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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