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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0088000 |
| Transcript ID | LotjaGi1g1v0088000.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|G7KGT1|G7KGT1_MEDTR Ribulose bisphosphate carboxylase/oxygenase activase; Found in the gene: LotjaGi1g1v0088000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12771597..12774656) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTCTGAATCACTAGATGCGTGAATTTAGGATTTTTCTGACTACAGTTAGAAACCAAATCCACTATCTAAATAGTTT GAATAGTAATAAAGGGTTTTTGTACTGTGATATTGCAGCTCAGCTTGAATAGCTCTGGAGCTGGTGTTTCAGTTCCTAGT TCAGCCTTCTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGCTTCCAAACTCCAAGGTTTCCAATGGAAGTTTCAAAAT TGTTGCTGCAGAGATTGATGAGAGCCAGCAGACTGACAAGGACAGATGGAAGGGTTTGGCCTATGATATATCAGATGACC AGCAAGACATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTATGCAGTC ATGAGCTCTTATGAGTACCTTAGCACTGGACTTAGACAGTGAGTGACACAAGATACTAGAAATTCTATACCAAAATAGTG TTTGCTTAGGTATCGAGTTCTAGTTGTGTGTATGAAAAATACCCTCCCACCAAGATGTGGATGTTCCCAACTTGAACAAG AGTATACCTGCATTAGACAAAAAAAAGTGTTTGCTTGTCATTTTCTTTAGTTGAAAAAAAAAGTGTGAAGTCCCCTTTTG ATCTAAACCTGGTCATGATGATGTTGTTTCAGGTACAACTTTGACAACACCATGGATGGGTTTTACATTGCTCCTGCTTT CATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTATGTAAACAGATACATGATT CCTGCGTATACTTCCTCAAGGATTTGATAAACTAGTGAATCATGTTTAATATTTTCATGATCTTTTTTCCAGGTTCCTCT CATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAGT GAGTTATTGTATTATTAATTCTAGGCTTTCCTTAATGATCTTTACTACTATAGAACACATCAGCTATTTCTGTTTGCAAC CAGTTCAAAATTGAAAATCTCCCTTGGAATAATTCTTATATGAACATATGTTTATTAGGTACAGCCAATCAATACTCAGG AATTATTAAATTAATAATGTTTTGACACTTCTAAGTCAAAAGTGAGTGAGTCATTTGTAAAGTAAGTCATTAATATGCTG GTCAACAAATCTATGGTCAAGTTTTTAAGAAGCACCATAATTTGTCATACATGTACATATATATATCATAATATATGAAC ACAATCAAAATCGCTATTTCTAAATCAATGGATGTGATGATTTACTTGACCCTTTAAAGTGGCTCAGGAGCAAAATCCAT AATTGAAGACATCAAAACTGATGTTAAAGTTGTTTTAATATCATATGGAACTTGTACTTAATAGACTAATGGAGGCATTG CTGGTATCTTTTGTGCTTAATATTATCGTAATAGACTCATGTTTGGAAATCCTTCTACAATTGATTCTAAAGTTGAAAAG TTATGGAAAGAAGTTTTGATTGTAAGAAGTAATTCTGAGAAAAAAAGAAGCTAATTCAAACATGTTATTGATATTTCTTT GCTGCTTACTAACTTCTAGTCCCTATGATTTTCTTATTACAGCCCCATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAA ATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCAAGAAGGGGAAGATGTGCTGC CTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACTGTCAACAACCAGATGGTGAA CGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAACAAGGAAGATAACCCGCGCG TGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCTAC TGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAATGTGCCTGAAGAAGATGTTGT CAAGATTGTTGACACCTTCCCTGGCCAATCCATTGGTAAGTTCTCTCCCTGCTATAAATTGTTTACCCAAACATGGACTG TTGAGACTATGAGACTAATCGGCATTCCATGTATGATTGCAGATTTCTTTGGTGCACTCAGGGCAAGAGTATACGATGAC GAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGT CTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGA GAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAACAGAGGAACTTTC TACGGTTAGATCCCTTTGTCTTGAGTCCTTGATTGGAACTTCACATGTAGCTTTATATTAATTAGCCAATTTGACATGAT ATGATTGAATGTTAACAACCTACAACCAAACGAATACATTAACCAGCACGAGGTTATTTTAGCTTAAGTATAAGTCTTGG GTTCGAGTCATGCCCAAGTTAAATCTTGATAGGAAGAGCTTTGTCGCTCATCATGGTCCTACCTGACTCGAACATGAATA AACAGTGGTTCAAACCAAAAGAAAGCTAACAATTTAAAACTTTTTGAATCAGTTTTTTTTTCCTAACCAATTAAAGGCTA TAGCACTTAGCTAGAACTTAGAAGCTACAGTAAAAATCTTCTCCCGGAATTGATTTTGACTTTATAATAACTGTAGAAAA TTTTCTAAACATGCTTTAAATATACCTAGGTCTAAACTTTTTGTTTGTTTCATTTTTTATGCAGGCAAAGCAGCCCAGCA AGTAAATGTTCCTGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAA CATGCTTATACACATTCTAG
CDS sequence (LotjaGi1g1v0088000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGAATTTAGGATTTTTCTGACTACACTCAGCTTGAATAGCTCTGGAGCTGGTGTTTCAGTTCCTAGTTCAGCCTT CTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGCTTCCAAACTCCAAGGTTTCCAATGGAAGTTTCAAAATTGTTGCTG CAGAGATTGATGAGAGCCAGCAGACTGACAAGGACAGATGGAAGGGTTTGGCCTATGATATATCAGATGACCAGCAAGAC ATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTATGCAGTCATGAGCTC TTATGAGTACCTTAGCACTGGACTTAGACAGTACAACTTTGACAACACCATGGATGGGTTTTACATTGCTCCTGCTTTCA TGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGG GGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGC TGGAGAGCTAGAAAGTGGAAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCA AGAAGGGGAAGATGTGCTGCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACT GTCAACAACCAGATGGTGAACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAA CAAGGAAGATAACCCGCGCGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACG GGCGTATGGAGAAGTTCTACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAAT GTGCCTGAAGAAGATGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCAAG AGTATACGATGACGAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGG AAGGACCTCCAGTCTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAA GAGAATGTGAAGAGAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAA CAGAGGAACTTTCTACGGCAAAGCAGCCCAGCAAGTAAATGTTCCTGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAA ACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTCTAG
Protein sequence (LotjaGi1g1v0088000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREFRIFLTTLSLNSSGAGVSVPSSAFFGSSLRKVNSRLPNSKVSNGSFKIVAAEIDESQQTDKDRWKGLAYDISDDQQD ITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIW GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT VNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDN VPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQ ENVKRVQLADKYLNEAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| PANTHER | 7 | 470 | 464 | 2.2E-288 | – | |
| PANTHER | 7 | 470 | 464 | 2.2E-288 | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 470 | 452 | - | – | |
| Gene3D | 119 | 303 | 185 | 3.5E-43 | – | |
| SUPERFAMILY | 124 | 330 | 207 | 6.31E-21 | ||
| Pfam | 159 | 300 | 142 | 5.9E-15 | ||
| Gene3D | 304 | 416 | 113 | 1.5E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0088000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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