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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0089200 |
| Transcript ID | LotjaGi1g1v0089200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|G7KBR7|G7KBR7_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0089200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13016756..13021748) extracted from Lotus japonicus Gifu genome v1.2.
GGTTCTTAACCCCTTTTGTCCCTCATCCCCACACTCTTTTTCAATTTTCATTTCACACTACTCCTTAACATTTACAGCTA ATTGCTAATTATGTTAACTTGGGAGTGCAGTGAAATGAAGTGTGAAAGTGAATGGTAATAAGTTGAACATATTCTAGATC AATTAACGAGTGGGAAAGAGAAACCAAACATCATCAATTAGTTAACTCTGATAATCTTCCGTCCCCACTTTTTCCTCTAT AAATACCAACACCCTTTCCTCTTTCCCTCCATAGAAACACAATCCCCTTCTTTCTGTCTTCACTCATTCATCATGGCACT AGTCAACACAATCAGCATTTTCACCACCTTGACCCTCCTCCTTCTCCTTCTCCCAACTTCAATCCAAGCCAAAATCCCCG GCGTCTACCCCGGCGGTGCATGGCAGACCGCTCACGCAACCTTCTACGGCGGCAGCGACGCCTCCGGAACAATGGGTAGG CACCCACTTCCCACACCACTCATCAAAACTCCAAAAATTAATGTCTAGTCCTTTTTCAACAATGTTGTTAAGTTTTTTGT TTTTTGTTGTGTTTGTGCAGGAGGAGCATGTGGGTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGC TGAGCACTGCTCTGTTCAACAACGGTCTCAGCTGCGGCGCGTGCTTTGAACTCAAGTGTGCGAATGATCCTAGCTGGTGC CACGCCGGCAGCCCTTCTATTTTCGTGACCGCCACAAACTTCTGCCCTCCTAACTTCGCTCAAGCTAGTGACAATGGAGG GTGGTGTAACCCTCCTAGGCCCCACTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTCAGTACCGCGCCGGCATCG TCCCCGTCTCTTACCGCCGGTAACTTCTTTCTTCCTCTTTCACTCACCCCCAAAATTCGCCATTTATGCTCTGTTTGTTT AGCATGAAAATAAGTGGAAGGAAAACAAGAGGATGAAAGTTGAATGGAAAACACAAGTATAACAATGGAAAATGGAGGGG GGTGGAATTGTAACGGCACAGCATACTCATTTTCCTTTATCTTACTTTTCCGTCTGTTTTACATACATTTTCACTCAATC CAAACCACTTAAAAATTATCTCATATTCTCATGTTTCATTTATGTGATTTCTTTTTATAGTCTTTTCACTTATATTCGTT CCACTTATTTTTCATCCCTACATTCAAACAGAGTGTTATTGAGATTTAAATTTTGTGTTAATATAATAAGTTAGGAAGAA AAAAATCAATTTTGGGTAACTTATTTAAAAAGAAGTCACTTACAGTGTAGTAAATATTAATGAGAAGTAATGTTTTTTTT TTCTAATTATTTGCTTATTTATGTTTTTTTTTAATTAAGTGGCTTAGAACATCGTAGAGTAGGATTCTTACAACTTATAA GTATATATAAAAATATAGTTTTTACACTATTTCCTATTTTAAAGATATTAAAAGTAATTTTTTCATGTTTGCAAATTTCT GAGAACAAATAAAATTGAAAATTTTGAAGAAATGAAGAACATAAAATTTCGATGACTTTGTTGTTTTTAATTTTTTTTAT GAATTTTTAATATAAAAAATGATACTTTTATAGCTGTTTTTGTTACAAAAATTATTGTGAGTTGAGCTTGAAATCTATAT ATATATGTAAAGCACACTTGAACAATAGCATTAAGTGCATTAAGCAATAAAGGAATTCCTTTGTATTAAATACATTAAAT AATAAAAATAAAAACTTAAATAAAATTCATCTACTTTATTATTCATTATATTAATTAATAATTGTTAAACTTTTCAATTT CTCATATATAAAATTAATTATAAATATTATTTTTATTTTAATTATTAAACACAACTTGAGGATTTTTTTAAATAATAATA GTAATTAAAATTTAGTACATTTACATTAATAAAAATATTATATAGTTAATAATATTTTTTATATTTAGAACTAATTCAAA AGTTTATAATTTGCCTTTTTCTATTCAAGAAGATTTTCTCTTTAAAAATAACCAATGTAAAACTTTCCAATATATATATA TATATATATATATATAATTTTTAAATTTTAGTTATTAATAATAAATTGATAAATGTTGAAATAATAACAAAAAAACTTAC TACTATTTTTAACATATAAAAAATGTGTTAAGTATTAAAGTTAAATATCATGTTAATATATTAAGTATTAAATTTGTAAA ATTGACTTGATTTTTACATCAGTTACAAGATTAATTAGTTATTTATTGTAATTTTTAGTATTACTTATATATTATTTTTT GAACGAATAATACTTATATATTAATCTTAAAACTTCTTAGAGATTTATATATAATTATGTGCGTGTGCGTATAAATATGA AAAAATAGACTTGAAATTTTGCATTAAATACATTAAGCAATAAAAAATTCCTTCCTTTATATTAAAGTACACTAAACAAT AACAAATCTCATATGTAATAAATATATTAAGTAAATAAATAAACTAAAAAAATTGAATTGTCAAAAACTATTTAACTACC TATATTAAATAGTGATATTTGTAAACATTAAAATTGACTTAACTTTTGCATCAATGTCAAATATTAAGAATTAAAATTAA TCAATTTAAAGAAAATTGTTTATAAATAATTTAAGTAAAATTTTTTAAAATATAAAAATTATTCTAACTTTTATTTAGCC TACAATAACATTCAGAAAACATTAAAAATATTGTAAATAAACCCGTGCAACGCACGGGTATTATATCTACCCGTGCGTTG CACGGGTTTACTTACAATATTTTTTTAACATTATATAAAAATTATTATAATTTAACTAATTTAAAATTAAAATATTTTTT AATTATAAATAAAAAATGTGTTAAGTATTTTTAATTATTATAGAAATTTTTATGGCAGATTGAGGTTATGTATTTGCTGT TGTTATTGACATTTTGGTTGTCGTCTGTGTTTTGAGTACTCTTTTTCCTTCCCTAGGGTTTTATATAAAATTACAATTTA TCTTATTTAAAATGAAATATTTTAATTATTTTAATTTTAATTATTCATTACAAATTGAGGTCTATTTTTAAAAATTAATA ATAATTGAAATTGACTACCTTTACATTAATGACAATAATAGATTGTTCATAATAATTAGTTTATATTCTTTACTAATGGT TGATAATAATTATAAATCTTATTATTTATTAATCATAAGTTAATAAATTTAAAAAAAATAACAAATAAAATTTATTACTA TTTTTTACTTATAAAAAAATATTTATTGATAAATAATGTCGAATAAATAGTTGAAAATTAAAAAAAAAAATGTCTCTATA AGATATAATTATTATTATATCGAATGTATATATTATTTGAAAAAAAAATCTTTAAATACAATTTTTGATCTATTATATAG AAGTAAAAATAACTTGAGGAAGCATGACAGAGAAAAATAATGACAACAAAAGTTGAATAAACTTAAATTTACTAAATAAT ATTTTAAGATACTAAAATTATAACTTATTATAATTTTTAAGTTAAAATTATTTCATTGTTGATAAAAGTGTATAAAAAAA TATGTTATTATAACTTATTTTAAAACCATATTACTTGATTTGAAATATTTCAAATTCAGTTAAGGATTTTTCAAATTATT AAATTCGTTTTTAAAGATTAGTTATGATTGAAAAATAGAATAAAACCTGGGGACAATATTTCCCATAATTGAGTATCAAT GTTTACAACTAGATATCTGTGATAAATTAGCCCCTCTGCAATTGAAACCACAATAATAAACCTAAAAACACGGAACCCAA ATCAATAGAATAGGTTAAAACCAAAGTTTTTAAAATTAATTCAATGTTAATACAAAAGAAATTTAATTACACTATAATAA TTTTTATATTATATCAAAAAAATAGTGTAAAATTAATTCAATGTTAATACAAAAGAAATTTAATTACACTATAATAATTT TTATATTATATCAAAAAAATAGTGTAAATAAACACGGGTATTATTTCTAGTAAAAAAGTAAAAGAAAATGAAAATTGCAC ACGATTCCAAAACCCACCAACATCCTGATCTTTATGCCCTTGTTGTTGTATTTTAATTACAAATTATGCCCCTTTTGATT GTGATCTGGTGCGGTCATATGCAGGGTACCATGCAGGAAGCAAGGAGGGATAAGGTTCACGATCAACGGCTTCCGTTACT TCAACCTGGTTCTGATCACCAACGTCGCAGGAGCAGGGGATATCGTGAGGACTAGCGTGAAAGGTTCAAAAACCGGGTGG ATGAGTATGAGCAGAAACTGGGGTCAGAACTGGCAGTCAAACTCTGTTCTGGTTGGTCAGTCACTGTCATTCAGGGTGAC AGCCAGTGACCGACGCACTTCCACATCATTGAACATTGTTCCATCCAATTGGCAATTTGGACAAACTTTCACTGGGAAGA ATTTCAGGGTCTAGTAATGTTTGATTTGAATTTTTTATTGGAATGTGGATAGGAGGGAGGAAAAAATGGGAGAGTGAGGT AAAGGAATATTATGATAGTGACTAGGGAACCTTTTTAGACTTTTTTATTTTTGTCTTGTTTGTGATAGTGGAGGGAAATC AACTCAACTATCTTGGTATATGAGAAATGGAGGGAGGGAAAGGTTATGTCAAATTTGTAATGGGTTGAAGTGGCTTCAAA TTCATGATGAGCCCGCAGCTCTTTCTTCCTTTTTATAATTATATATAACTATATAATATAACAAGGTCAAGTGTGTTTAA TCTTTTTGTTTTTAATTTTTCTTGTTCATTTGGTTGATATATGGGTGGTTGATTGAAAATTTAAGTGTTTCTAATTAGTC TCTTATTGGCTGAAAATATGTTAAGAAAACACAATGTGTGAAGATTTGTATTCAATACTTTTGGTTCGTTCTTCTAAAGT GAGAAATTTCTCCTCATGCTTATAAAAAAAAAC
CDS sequence (LotjaGi1g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTAGTCAACACAATCAGCATTTTCACCACCTTGACCCTCCTCCTTCTCCTTCTCCCAACTTCAATCCAAGCCAA AATCCCCGGCGTCTACCCCGGCGGTGCATGGCAGACCGCTCACGCAACCTTCTACGGCGGCAGCGACGCCTCCGGAACAA TGGGAGGAGCATGTGGGTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTGAGCACTGCTCTGTTC AACAACGGTCTCAGCTGCGGCGCGTGCTTTGAACTCAAGTGTGCGAATGATCCTAGCTGGTGCCACGCCGGCAGCCCTTC TATTTTCGTGACCGCCACAAACTTCTGCCCTCCTAACTTCGCTCAAGCTAGTGACAATGGAGGGTGGTGTAACCCTCCTA GGCCCCACTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGC CGGGTACCATGCAGGAAGCAAGGAGGGATAAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTCTGATCACCAA CGTCGCAGGAGCAGGGGATATCGTGAGGACTAGCGTGAAAGGTTCAAAAACCGGGTGGATGAGTATGAGCAGAAACTGGG GTCAGAACTGGCAGTCAAACTCTGTTCTGGTTGGTCAGTCACTGTCATTCAGGGTGACAGCCAGTGACCGACGCACTTCC ACATCATTGAACATTGTTCCATCCAATTGGCAATTTGGACAAACTTTCACTGGGAAGAATTTCAGGGTCTAG
Protein sequence (LotjaGi1g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALVNTISIFTTLTLLLLLLPTSIQAKIPGVYPGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALF NNGLSCGACFELKCANDPSWCHAGSPSIFVTATNFCPPNFAQASDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYR RVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTS TSLNIVPSNWQFGQTFTGKNFRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| TMHMM | 2 | 24 | 23 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| PANTHER | 13 | 263 | 251 | 6.8E-165 | – | |
| PANTHER | 13 | 263 | 251 | 6.8E-165 | – | |
| Phobius | 21 | 26 | 6 | - | – | |
| Phobius | 27 | 263 | 237 | - | – | |
| Gene3D | 29 | 165 | 137 | 4.4E-45 | ||
| SUPERFAMILY | 36 | 187 | 152 | 4.88E-58 | ||
| PRINTS | 36 | 51 | 16 | 3.5E-53 | ||
| PRINTS | 54 | 72 | 19 | 3.5E-53 | ||
| ProSiteProfiles | 55 | 169 | 115 | 30.967 | ||
| PRINTS | 67 | 81 | 15 | 3.0E-82 | ||
| Pfam | 72 | 159 | 88 | 1.2E-21 | ||
| SMART | 72 | 159 | 88 | 6.4E-57 | ||
| PRINTS | 76 | 94 | 19 | 3.5E-53 | ||
| PRINTS | 94 | 105 | 12 | 3.0E-82 | ||
| PRINTS | 108 | 118 | 11 | 3.0E-82 | ||
| PRINTS | 127 | 144 | 18 | 3.0E-82 | ||
| PRINTS | 144 | 157 | 14 | 3.0E-82 | ||
| PRINTS | 152 | 168 | 17 | 3.5E-53 | ||
| SUPERFAMILY | 166 | 258 | 93 | 4.45E-34 | ||
| PRINTS | 168 | 180 | 13 | 3.0E-82 | ||
| Gene3D | 169 | 261 | 93 | 1.9E-22 | ||
| Pfam | 170 | 247 | 78 | 3.0E-25 | ||
| ProSiteProfiles | 179 | 258 | 80 | 21.587 | ||
| PRINTS | 180 | 201 | 22 | 3.0E-82 | ||
| PRINTS | 206 | 220 | 15 | 3.5E-53 | ||
| PRINTS | 215 | 236 | 22 | 3.0E-82 | ||
| PRINTS | 244 | 260 | 17 | 3.0E-82 | ||
| PRINTS | 244 | 258 | 15 | 3.5E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0089200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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