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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0094900 |
| Transcript ID | LotjaGi1g1v0094900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Multifunctional CCA protein; TAIR: AT1G22660.1 Polynucleotide adenylyltransferase family protein; Swiss-Prot: sp|P21269|CCA1_YEAST CCA tRNA nucleotidyltransferase, mitochondrial; TrEMBL-Plants: tr|I1NH95|I1NH95_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0094900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14370080..14371826) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCTTCAACCACCCGGCAAAACTCTTCTCATACGAGCCCTACGCCGTTGTTTCGGTGCTCCGTCTACCATCAATGTC TCTGATCATGCATCCTAGCGACTGCATCGGACTCACCGTGGTCGAGCAGGGCATCTTTGATAGGCTTGCCGCCACCCTCC GCCACTCCAAACTCGAAACTCAGATCCGAGTCGTTGGCGGATGGGTTCGCGACAAGCTTCTGGGGAAAACTTGCCTTAGC ATTGATATCACTCTTGATAATATATTGGCAACTGAGTTTGTCTATAAATTCAGGGAGTACTTGTTGTCCATGGGTGAACC TGCACTGGAAATCTGTGTTTTTGATAGCAATAATGCTGACCAGTCCAAACATTTGGAAACAGCGAGGGTGTGTCTGTTTG GTGTGTGGATTCATTTCTTTGACTTAAGGATTGAGAATAGCTGCATTACTTCTGAGCAAACATTTTGCATGCCATTAGCG GACGCATATAGGAGGGATTTGACAATTAACAGCTTATTCTACAATATCAACACTGATTTACTTGAAGATTTCACCATGAA AGGGATTTCAGACCTTAAGTCTGGAAAGATAGTTACTATTTCACCTCCAAAGGCCTCATTTCTTGATGACCCATTACGAG TTCTTCGAGCCATTCGGTTTGGTGCTAGATATGAATTTACTCTAGATGAAGATCTGAGAGTAGCTGCCACATGTGATGAT GTGAAAAATGCCCTAGTTGCTAAGGTTAGCAGAGAGCGCATTGGATCCGAGATTGATCTTATGATATCTGGAAATCAGCC TGTTAAAGCAATGACTTATATTTCTGAGCTGACACTATTTTCTATAGTATTCAGTCTTGCCCCTGAGCCTGTCTCTGCTA TTCCTGATGCTTGTGAAAGTCTTTGCGTTTCTTACTTGGATACTGCATGGAACCTTATCCGTTTAGTTGGAGAATCAACC TTTACAACTCGTCAGAGAAGATTAACATTATATGCTGCTTTTTTTCTCCCTCTTAGAAACACTTATTACAGAGAAAAGGA AGATAAGAAGATTCCTGTTGTCAATTACATTATTCATGAGTCTCTCAAACGAAAAGCTAAATTTGCAGAAAAGGTTCTTG GTTTACATCGAGCATCATGTACACTCTCGCTTCTGATTCCTGATCTTGTATCTAGTGAAAATATCCAAGTTAATGATCAC GATTGTATGGAAAACTTGACTGATGTCCCGGTCTCTTCTAGGGTCCGGGGACTAATAGGGTTTATCGTAAGAGAGGTTAA AGATAATTGGCGAGTTGCACTGTTGATATCCACAATGTTACATCCCATTGACATTGATGACACTGCGGACAAGTACTCAG AGTTGTGCAAACGAAGAGATCTGTTTAATACTGTGGAGAATTCTATAATCGACCTAAGCCTGGAGAACGAATTGATCTGT GGGGAAGATGAATACTCTACTGCTGGATAAAGTAATGGCTTGGCAACTTGCCTATCCATCAGGAATTGCGGAGGAATGCA TTGAATGGTTGAAGTTGGAGTGAGATTTATTGTGTTGATCAATTGTCTATTCCTTACCATGTTTTAAGGATTGAGAGCAC TATGACTTCTGAAGTTTGGGATGTTAATTTGCACATAGGGAAGTAGCCTTATTATTTTTTCCCTTATCATGACCTACTTT CATCTAATTAAGTAATTATATTCTTGATACTCTCAAGTACCTTCTTTACTTTCATCTAATTTCACTT
CDS sequence (LotjaGi1g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTGATCATGCATCCTAGCGACTGCATCGGACTCACCGTGGTCGAGCAGGGCATCTTTGATAGGCTTGCCGCCAC CCTCCGCCACTCCAAACTCGAAACTCAGATCCGAGTCGTTGGCGGATGGGTTCGCGACAAGCTTCTGGGGAAAACTTGCC TTAGCATTGATATCACTCTTGATAATATATTGGCAACTGAGTTTGTCTATAAATTCAGGGAGTACTTGTTGTCCATGGGT GAACCTGCACTGGAAATCTGTGTTTTTGATAGCAATAATGCTGACCAGTCCAAACATTTGGAAACAGCGAGGGTGTGTCT GTTTGGTGTGTGGATTCATTTCTTTGACTTAAGGATTGAGAATAGCTGCATTACTTCTGAGCAAACATTTTGCATGCCAT TAGCGGACGCATATAGGAGGGATTTGACAATTAACAGCTTATTCTACAATATCAACACTGATTTACTTGAAGATTTCACC ATGAAAGGGATTTCAGACCTTAAGTCTGGAAAGATAGTTACTATTTCACCTCCAAAGGCCTCATTTCTTGATGACCCATT ACGAGTTCTTCGAGCCATTCGGTTTGGTGCTAGATATGAATTTACTCTAGATGAAGATCTGAGAGTAGCTGCCACATGTG ATGATGTGAAAAATGCCCTAGTTGCTAAGGTTAGCAGAGAGCGCATTGGATCCGAGATTGATCTTATGATATCTGGAAAT CAGCCTGTTAAAGCAATGACTTATATTTCTGAGCTGACACTATTTTCTATAGTATTCAGTCTTGCCCCTGAGCCTGTCTC TGCTATTCCTGATGCTTGTGAAAGTCTTTGCGTTTCTTACTTGGATACTGCATGGAACCTTATCCGTTTAGTTGGAGAAT CAACCTTTACAACTCGTCAGAGAAGATTAACATTATATGCTGCTTTTTTTCTCCCTCTTAGAAACACTTATTACAGAGAA AAGGAAGATAAGAAGATTCCTGTTGTCAATTACATTATTCATGAGTCTCTCAAACGAAAAGCTAAATTTGCAGAAAAGGT TCTTGGTTTACATCGAGCATCATGTACACTCTCGCTTCTGATTCCTGATCTTGTATCTAGTGAAAATATCCAAGTTAATG ATCACGATTGTATGGAAAACTTGACTGATGTCCCGGTCTCTTCTAGGGTCCGGGGACTAATAGGGTTTATCGTAAGAGAG GTTAAAGATAATTGGCGAGTTGCACTGTTGATATCCACAATGTTACATCCCATTGACATTGATGACACTGCGGACAAGTA CTCAGAGTTGTGCAAACGAAGAGATCTGTTTAATACTGTGGAGAATTCTATAATCGACCTAAGCCTGGAGAACGAATTGA TCTGTGGGGAAGATGAATACTCTACTGCTGGATAA
Protein sequence (LotjaGi1g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLIMHPSDCIGLTVVEQGIFDRLAATLRHSKLETQIRVVGGWVRDKLLGKTCLSIDITLDNILATEFVYKFREYLLSMG EPALEICVFDSNNADQSKHLETARVCLFGVWIHFFDLRIENSCITSEQTFCMPLADAYRRDLTINSLFYNINTDLLEDFT MKGISDLKSGKIVTISPPKASFLDDPLRVLRAIRFGARYEFTLDEDLRVAATCDDVKNALVAKVSRERIGSEIDLMISGN QPVKAMTYISELTLFSIVFSLAPEPVSAIPDACESLCVSYLDTAWNLIRLVGESTFTTRQRRLTLYAAFFLPLRNTYYRE KEDKKIPVVNYIIHESLKRKAKFAEKVLGLHRASCTLSLLIPDLVSSENIQVNDHDCMENLTDVPVSSRVRGLIGFIVRE VKDNWRVALLISTMLHPIDIDDTADKYSELCKRRDLFNTVENSIIDLSLENELICGEDEYSTAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 451 | 445 | 2.2E-146 | – | |
| Gene3D | 14 | 168 | 155 | 3.9E-23 | ||
| SUPERFAMILY | 30 | 169 | 140 | 1.31E-20 | ||
| Pfam | 38 | 172 | 135 | 1.1E-21 | ||
| SUPERFAMILY | 171 | 348 | 178 | 1.83E-26 | – | |
| Gene3D | 178 | 358 | 181 | 3.0E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Molecular function | Nucleotidyltransferase activity | Catalysis of the transfer of a nucleotidyl group to a reactant. |
Expression pattern of LotjaGi1g1v0094900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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