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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0095300 |
| Transcript ID | LotjaGi1g1v0095300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nudix hydrolase-like protein; TAIR: AT2G01670.1 nudix hydrolase homolog 17; Swiss-Prot: sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial; TrEMBL-Plants: tr|A0A151RI97|A0A151RI97_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0095300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14429471..14431379) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTATTATATTCCTTTCCTTTCTATTCTAACCGGTTCCCTCTCGATCCATTAATATTTAAGGACACCCCTCTTCA TCTTTCTATCATCTTATCCAAAAATTCATCATAACCACAATTTGCTTCCACTCTATCAATTTTCTTACCTCTTCCAAACT CAAAACGCTCCTTAATTGGCCAAAAGAAAAAAATGGTGAGTTTAGTATCCCAAGAGAACACTGTGGCATTGGTTTCTCGC ACTGGCAGGGAGTTGCAGCGCTACAAAAAGGGTCGTCGTCAAGTTGTGGGGTTCGTCTCTTACTCACCTTAACTTTTCAT TTTTACGTTAATCTTCTATAAAAAACTTTAGTTTATGTTTTTCTGTAAATTCATCTTCTTCTGTTTTGCTGAATTTTAAA ATCTCCTTTCGGGTACGTATCATAATTTCAATATGGTTACTGAAGCTTTAGTAACTTTGTGTGATTAATCAATTAATCGT GCAGGTGCATACCATATAGATATAAAACTGGTAACCAAACTTCCTTGGAGGAACATGATGAGGAATTATTGGAGGTTTTG GTTATTACTTCTCAGAAAGGCAAAGGGATGCTATTTCCTAAGGTATAAAGCCTACAAAATAGCCGTCAATATTAAACATT GCTTATTATTTTTTATTGTTTTATCATTTATTAATTTTTATTTTTTAATGTGGATGGTTTTACCAATTAATTAACACCAG GGAGGCTGGGAATTAGATGAATCAAAAAAGGAGGCAGCTCTGAGAGAAACCATAGAGGAAGCTGGTGTGCGGGGCACTGT TGAGGTGAGGCTACTTGATCAACGTATTCAGCTTAAAATAATAGGAACAAAATTTCCACCCTCCAATCTCAGTTTCTTAC CCCAAATGGAATTTGTCGTGTGAATTAAAAGACAGGAACAAGACAAACTTACTTTGGTTTTAGTTTACATGGTAAAATTT TATTGGTGGAAAAAGAATGAATTAAAATTTAATTAATAATTTGAGTATGAAACATTTCAATCCAAAATAGTAGTAAGGAC ACGGTAATTCTATTGTAGATAATGTTAAAAATTAACCACTCATAAACCATATTTTTATAATATTACGTAATAAAAATGCT AGAAATAATAATATAAATTCATTAATATGGTCCATACTCAATAATTTAAATTTTTGAGATAATTAGTTTATAATATAAAA AAGTAATTTGTATATAATTCCTTTTAACTTGGGTTTGTGCAAATATAAAAAACTTTGATTCGGCTTAAAATTATGCTCAT TGCTATATTTGGGTTGTTGCAGGGTAAATTGGGTAAGTGGAGCTTCAAGAGCAAAACCCATGATACTTTATATGAAGGCT ACATGTTCCCTCTACTTGTTCTTGAGCAATTAGAGATTTGGCCGGAGAAGAACGTTCGTCGAAGAATGTGGGTAGGTTAA ACATAAAACAATCTGAGAAAGTGTTTGAATTTTTCTTCTTTTTCTTATAACTTCTTCCAAGTGATCATGAGATATATAAT GTTTGATTTTTCAACTTTTTGGATTGATGTAGATGAGTGTTTCTGAGGCTAGGGAAGTTTGTCAATACTTGTGGATGAAA GAAGCTCTAGAGAGACTGGTAAATCGGCTGGCGCCTCACAAACTTGGTCATGTGAATACTGTTGCACAAGGTTGTATACA TTGCATAGGAGGAGTTGGCAAATCTGACTTGTAAACAGGACTCAGCCTAAGCTTTTCTTGGACGGCATCAAGTGAGGAAT AGTTAGTAGGATCCAAAGAAGGGATAAAATTTGTACAAATGATAAAATTATAATAAGAACTAATGAAATGATTTTTAGAC ATCCAAATAAGACTATATCATCCAACTCACCTTTTCCATCTCCTTTTTCAATGGAGACCTCCATCCCCC
CDS sequence (LotjaGi1g1v0095300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGTTTAGTATCCCAAGAGAACACTGTGGCATTGGTTTCTCGCACTGGCAGGGAGTTGCAGCGCTACAAAAAGGG TCGTCGTCAAGTTGTGGGGTGCATACCATATAGATATAAAACTGGTAACCAAACTTCCTTGGAGGAACATGATGAGGAAT TATTGGAGGTTTTGGTTATTACTTCTCAGAAAGGCAAAGGGATGCTATTTCCTAAGGGAGGCTGGGAATTAGATGAATCA AAAAAGGAGGCAGCTCTGAGAGAAACCATAGAGGAAGCTGGTGTGCGGGGCACTGTTGAGGGTAAATTGGGTAAGTGGAG CTTCAAGAGCAAAACCCATGATACTTTATATGAAGGCTACATGTTCCCTCTACTTGTTCTTGAGCAATTAGAGATTTGGC CGGAGAAGAACGTTCGTCGAAGAATGTGGATGAGTGTTTCTGAGGCTAGGGAAGTTTGTCAATACTTGTGGATGAAAGAA GCTCTAGAGAGACTGGTAAATCGGCTGGCGCCTCACAAACTTGGTCATGTGAATACTGTTGCACAAGGTTGTATACATTG CATAGGAGGAGTTGGCAAATCTGACTTGTAA
Protein sequence (LotjaGi1g1v0095300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLVSQENTVALVSRTGRELQRYKKGRRQVVGCIPYRYKTGNQTSLEEHDEELLEVLVITSQKGKGMLFPKGGWELDES KKEAALRETIEEAGVRGTVEGKLGKWSFKSKTHDTLYEGYMFPLLVLEQLEIWPEKNVRRRMWMSVSEAREVCQYLWMKE ALERLVNRLAPHKLGHVNTVAQGCIHCIGGVGKSDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 190 | 190 | 2.9E-101 | – | |
| PANTHER | 1 | 190 | 190 | 2.9E-101 | – | |
| SUPERFAMILY | 19 | 168 | 150 | 9.48E-21 | ||
| Gene3D | 21 | 168 | 148 | 1.5E-27 | – | |
| ProSiteProfiles | 27 | 166 | 140 | 13.559 | ||
| CDD | 30 | 159 | 130 | 1.90469E-36 | – | |
| Pfam | 57 | 161 | 105 | 6.1E-9 | ||
| ProSitePatterns | 73 | 94 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0095300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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