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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0098200 |
| Transcript ID | LotjaGi1g1v0098200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G73710.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710; TrEMBL-Plants: tr|I1KU82|I1KU82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0098200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14965420..14966392) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTATCTGGTGCTGATTTAGTGGACCAAGCAAGGGACCTCATAGTTGAAATGCAGGAAATGGGGTTTAAGCCTCATTG TCAAACTTTTTCTGCTGTTATTGGATGCTATGCTCGTCTTGGTCAGCTGTCTGATGCAGTAAGTGTGTATCATGAAATGC TAAGTGCTGGAGTGAAACCAAATGAGATTGTTTATGGATCTATAATAGATGGATTTTCAGAGCATGGTAGTCTTGAAGAG GCACTCAAATACTTCCACATGATGGAAGAATCTGGATTATCAGCAAATTTAGTTGTCTTAACAGCTCTATTGAAGTCCTA TTGTAAAGTTGGAAACTTAGACGGAGCGAAAGCCATCTACCAGAAGATGCAGAACATGGAAGGAGGTCTTGATTTAGTTG CTTGTAATAGTATGATTACTCTCTTTGCAGATCTCGGCTTGGTATCTGAAGCCAAGTTGGCTTTTGAAAATTTGAAAGAA ATGGGCTGGGCAGATTGTGTTTCATATGGAACAATGATGTATCTTTATAAAGATGTGGGTCTGATTGATGAGGCCATCGA GTTAGCTGAGGAGATGAAACTGTCGGGTTTACTGAGGGATTGTGTTTCGTATAACAAGGTACTGGTGTGTTATGCTGCTA ATAGGCAATTTTACGAGTGTGGTGAAATAATACATGAAATGATATCTCAGAAGCTCTTGCCAAATGATGGAACTTTTAAA GTGTTATTCACTATATTGAAGAAGGGAGGTTTTCCTATTGAAGCAGCAGAACAGTTAGAGTCATCTTACCAGGAGGGGAA ACCTTATGCTCGACAAGCAACCTTCACTGCTTTGTACTCCTTAGTTGGTATGCATACTTTGGCACTTGAATCTGCCCAAA CATTCATAGAATCTGAGGTTGATCTTGACTCTTACGCCTATAATGTGGCAATCTATGCATATGGTTCAGCTGGTGATATT GGTAAGGCCTTGA
CDS sequence (LotjaGi1g1v0098200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATCTGGTGCTGATTTAGTGGACCAAGCAAGGGACCTCATAGTTGAAATGCAGGAAATGGGGTTTAAGCCTCATTG TCAAACTTTTTCTGCTGTTATTGGATGCTATGCTCGTCTTGGTCAGCTGTCTGATGCAGTAAGTGTGTATCATGAAATGC TAAGTGCTGGAGTGAAACCAAATGAGATTGTTTATGGATCTATAATAGATGGATTTTCAGAGCATGGTAGTCTTGAAGAG GCACTCAAATACTTCCACATGATGGAAGAATCTGGATTATCAGCAAATTTAGTTGTCTTAACAGCTCTATTGAAGTCCTA TTGTAAAGTTGGAAACTTAGACGGAGCGAAAGCCATCTACCAGAAGATGCAGAACATGGAAGGAGGTCTTGATTTAGTTG CTTGTAATAGTATGATTACTCTCTTTGCAGATCTCGGCTTGGTATCTGAAGCCAAGTTGGCTTTTGAAAATTTGAAAGAA ATGGGCTGGGCAGATTGTGTTTCATATGGAACAATGATGTATCTTTATAAAGATGTGGGTCTGATTGATGAGGCCATCGA GTTAGCTGAGGAGATGAAACTGTCGGGTTTACTGAGGGATTGTGTTTCGTATAACAAGGTACTGGTGTGTTATGCTGCTA ATAGGCAATTTTACGAGTGTGGTGAAATAATACATGAAATGATATCTCAGAAGCTCTTGCCAAATGATGGAACTTTTAAA GTGTTATTCACTATATTGAAGAAGGGAGGTTTTCCTATTGAAGCACTGGTGATATTGGTAAGGCCTTGA
Protein sequence (LotjaGi1g1v0098200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSGADLVDQARDLIVEMQEMGFKPHCQTFSAVIGCYARLGQLSDAVSVYHEMLSAGVKPNEIVYGSIIDGFSEHGSLEE ALKYFHMMEESGLSANLVVLTALLKSYCKVGNLDGAKAIYQKMQNMEGGLDLVACNSMITLFADLGLVSEAKLAFENLKE MGWADCVSYGTMMYLYKDVGLIDEAIELAEEMKLSGLLRDCVSYNKVLVCYAANRQFYECGEIIHEMISQKLLPNDGTFK VLFTILKKGGFPIEALVILVRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 25 | 25 | 7.07 | ||
| Gene3D | 1 | 129 | 129 | 3.8E-35 | ||
| PANTHER | 6 | 192 | 187 | 2.3E-44 | – | |
| ProSiteProfiles | 26 | 60 | 35 | 11.466 | ||
| Pfam | 29 | 72 | 44 | 6.9E-9 | ||
| TIGRFAM | 29 | 62 | 34 | 8.8E-10 | ||
| SUPERFAMILY | 36 | 190 | 155 | 2.66E-5 | ||
| ProSiteProfiles | 61 | 95 | 35 | 11.4 | ||
| TIGRFAM | 64 | 96 | 33 | 5.6E-8 | ||
| ProSiteProfiles | 96 | 126 | 31 | 9.164 | ||
| Pfam | 98 | 125 | 28 | 1.4E-4 | ||
| TIGRFAM | 99 | 125 | 27 | 2.0E-5 | ||
| Gene3D | 130 | 261 | 132 | 1.9E-18 | ||
| ProSiteProfiles | 131 | 161 | 31 | 7.509 | ||
| Pfam | 133 | 162 | 30 | 0.015 | ||
| ProSiteProfiles | 165 | 199 | 35 | 9.416 | ||
| PANTHER | 165 | 255 | 91 | 2.3E-44 | – | |
| Pfam | 167 | 197 | 31 | 7.5E-4 | ||
| TIGRFAM | 167 | 200 | 34 | 0.0013 | ||
| ProSiteProfiles | 200 | 234 | 35 | 8.89 | ||
| Pfam | 202 | 230 | 29 | 0.069 | ||
| TIGRFAM | 202 | 235 | 34 | 1.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0098200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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