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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0099000 |
| Transcript ID | LotjaGi1g1v0099000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate decarboxylase; TAIR: AT5G17330.1 glutamate decarboxylase; Swiss-Prot: sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1; TrEMBL-Plants: tr|I1MBS2|I1MBS2_SOYBN Glutamate decarboxylase; Found in the gene: LotjaGi1g1v0099000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15088470..15092773) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCTTTCTCACATCACCATGCACTCTATTTAAGTCCCTAACTCCTCTCCTCACCCCCCATAAACTAATAAACTTGGCA TCACTTCTATACACACAAATTAACACAGTTCTCTATCGATCTTCTTACTTTCTCTGGAAAGAAACAAACACCACCGTGAT CATCATGGTTCTCTCCAAAATCGCCTCCGAGATGGATGTCTCAATCCATTCAACCTTCGCCTCCCGTTATGTCCGCACCG CACTTCCCAGGTACCATTCATTCATTCCATTATCATCAAAATTCTATATCTTTACTATGGATCTATTTTTCCATTTAAGA TGGATCAGCATTGAACATTTACAAAGTAAATTTAATATGTAGGATCTTATGATCAAAATTTGTGAACATTTAAAGGAAAA AAAAAAGTATATACAAAATTTTGTCATGTATATTATATGACCATGCATGATTATGATGATCCGTGAAGGTTCAAGATGGC GGAGCAGTCGATCCCAAAGGAAGCGGCATACCAGATCATAAACGACGAGCTGATGCTGGATGGGAATCCGAGGCTGAACC TGGCGTCGTTCGTGACAACTTGGATGGAGCCAGAATGTGACAAGCTCATCATGGCTTCCATTAACAAAAACTATGTCGAC ATGGATGAATACCCTGTCACCACTGAGCTCCAGGCAAGTCTCATCTCTCTCATCCGCCCATTCACCATTAGTATCAAAGT ATCAAACAATCAATATCATTAATTATCTCATCAAAACAAGGAAATTATAAAAAAAAATCATATTTTTTGTGCATGGGATT AAGCAAAAATCTTTTATGTTTTGCTATCTGATTGCTTTGATGTAAACAGATGATCGCACAATTGATATTAAAGTTTGTTC ACGTTGTATTTAAATTACTATCCAAATAATACTACTTAACCATTCTTTACACTTTGTTTAATGGCAGAAAAATGGGGAAA AAATCAAAATTGAATTTCTCTCTTCTTTTTCTATTGTAATGGGTCTGATCATGTTTAGGGATAGAGGTATAAACAATAGA AATGTGAGAAAGTAATAACTCATTTCACTTACCCTGTTCTAATTGCGTGGCTTAATTTTTAGCATGAGACAAATGTTCCG TAGGAATAGTTCAGGTCCCATTTGTGTTGTTGACTAATGACAAAAAAATTCCTACTTGTCTATTGCTTCTAACTTGGCTA TCTATGTCTATGTGGTATTCACTTTAACATAGGCATCGTATTAGTTCATTAATTTGACTAAATTGAATCCTAAATTTACT ATTCTTTGTCAAGTTCAGAGTTGGAAGCAGCTTCTTTTCTTTGTACAATGGTAAGGTTTGTTAGAAAACTAATTTATAAA GGAAACTACTACAATGTATATATACTATATGTAATACTCCAGTAATACATTATAAAATTATCAACAACAAAAAATTGTAT ATTTAACATTTAAATTATACTCTCTAGAAGAATAAGCTAAAAGCTCTTTGTTAGGTGTCTTTCTAACTTTTGTGCATTGC AGAATCGATGTGTTAATATGATAGCTCATCTTTTCAATGCCCCACTTGGAGAATCAGAAACTGCCGTTGGTGTTGGCACG GTGGGGTCTTCAGAGGCCATCATGTTGGCTGGATTGGCATTCAAGAGGAAGTGGCAAAACAAAAGGAGAAGTGAAGGCAA ACCTGTTGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTACACAGTAACACAAACATTCATTCTTGTCCTTATA GCATGTTTGAATCAGCTTATTTTTCCTCAGCATCAATTCTAGCATTCAGAAGCTACTCTCATAAGCTTCTAGCCATAATT GATTTTTGACTTTAATGTTAATTGTAGAAGTATTTACAGACACACTTAGAAGTCATTAATCGAGTTTTAATTAATTGTTC TTGTGTGAAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTTAAGCTGAGTGAAGGTTACT ATGTAATGGACCCCGAAAAGGCTGTGGAAATGGTGGATCAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTA AATGGAGAGTTTGAAGATGTCAAATGCCTAAACGATCTCCTCATAAAAAAAAATAACGAAACAGGGTATCTCTTTTATCT CTTGAGGCTAACTGCAAAACTTTAAACTCTTGTGTAATTGATTCTGAAGGCGGAATCAATTCTTGAAAGAAACTTTTGTG AGTAGCTTCTGAGTTTTAAAATAAATTTTGAGGAAAAAGATGATAGAAACATACTATAAGTTGAATTAATGTGTATACTT GGATTGACCTGTGAAATCCTTTGGTAGATGGGACACTCCTATTCATGTGGATGCAGCAAGTGGTGGATTCATTGCTCCAT TTCTCTATCCAGAGCTTGAGTGGGATTTCCGTTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTT GTCTATGCTGGCATTGGTTGGGTCATTTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATCTTTCACATTAACTATCT TGGAGCTGATCAACCTACATTCACTCTCAACTTCTCCAAAGGTAAACATAAAATTGACACACCCAATTGGTCTAATTAGA ATGCACCTGAATTATCTCCCTTTGTACATGATTATAGTACTAATTTGTATCATGAAATATGCACTGCAGGTTCTAGCCAA GTTATTGCTCAGTACTACCAGCTAATTCGTTTGGGTCATGAGGTATTAAGACATCCATTTATAATCAATGTGGTGTTACT CTAAACTCACAAATGACATTTAAAAGAACAAACCTTGAAGCTACTAAGAAGGTGTTCGGATGCCCCATTTGTGAACATCA GAATAGATTCTTCACTATCAAAATGTGTTTGGATGTTTCCTTTCACAATTGAGTAATGTTTGATAAGATTATGGAACAGG CAAAATCACGTATGTATCACCAAAAGCCACACAAAGTGGCTTACGATTTAGGTGATTCTGGACATACACGATTCCAGCTG TGAAAACCAATCAACTTCTCATTCTTCATAATCAATTCTAACACCATAAGCTTCTCACAAAAGCTTCTTTCTGGAATTGA TTTCGGCTTTAGACAATTCTAGAAGCATGTGATTCTAACTACAAAATTAATTATGGGATGAAGTTACAAAAACCTAGCTT TTGTGGTGGACATAAACTATTATGAGATTTTACTACATTACCCTACATAAATCACATTTCTCAAAAATATATTCAGACAT AAATTACTTTACTTTCAACTCACTTTTACCATAATTACTGTTACGAAAATCAATTCTGGCAATGCTGATTCAGATCATGC ACAAAGTAACATGACGCTATGCTACTTATATGGATATTTTTCTCAAACCTGATGCTATAATTCCTTTATACTAATTGGGT TTGTAGGGATACAGAAATGTAATGGAAAACTGCAAAGACAACATGGTGGTACTAAAGGAAGGTCTGGATAAAACAGGTCG CTTTGACATTGTGTCCAAAGATGAGGGTGTGCCATTGGTGGCATTCACTTTGAAGGACCACAGCAACTTCAATGAGTTCC AAGTCTCTGATATGCTGAGGCGCTATGGCTGGATAGTGCCAGCATACACCATGCCCCCAGATGCAGAACATGTTACCGTG CTCCGCGTTGTGATCAGGGAGGACTTTTCCCGCACCCTCGCAGAGCGTCTCGTGATTGACATCACCAAAGTGTTGCATGA GCTGGATCTTCTCCCTGCAAGGGTGGTCACTAGCAGCACTGTTACTGTTATTGGAGAAGAAGCTGAGGACAGTGACGGCA ACACAGTGGTGGTTGCTAAGAGGAGTGCTATGGAGACTCAGAGGGAAATCACTTCAGTTTGGAAGAAATTTGTGATGGAG AATAAGCAGAAGAAGATGAATCTCGTCTGTTAGAGTCTTGTGTTGGATAATTTTGAGGCTATGTTTAACCATGCAAGGGT GAGTTTATATATTTTTTGACTCCTAAATTTAGCAGTACATTTTGATGTCCGGATCCTGATTCAAGAGAGAACCACCGATA AGTGTTCTCTAGTGCAGGTTGTTCTTATATTCCAAAATTTTGTTCAAGTTTTCTCATTATCAAATTATTCTTATACTTTT TGCTTAAGTTTTCAATCATCTGATGTCTCATTTTTATGTTTTACTTGTCTATATGGGAAAGATTAACCATTTTCTGATAT GCATGTTTCTTAGATCAAGTCAAGAATGAGAGTTGTAGAAGTATGTTGGTAATTTAGAATAAAC
CDS sequence (LotjaGi1g1v0099000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCTCCAAAATCGCCTCCGAGATGGATGTCTCAATCCATTCAACCTTCGCCTCCCGTTATGTCCGCACCGCACT TCCCAGGTTCAAGATGGCGGAGCAGTCGATCCCAAAGGAAGCGGCATACCAGATCATAAACGACGAGCTGATGCTGGATG GGAATCCGAGGCTGAACCTGGCGTCGTTCGTGACAACTTGGATGGAGCCAGAATGTGACAAGCTCATCATGGCTTCCATT AACAAAAACTATGTCGACATGGATGAATACCCTGTCACCACTGAGCTCCAGAATCGATGTGTTAATATGATAGCTCATCT TTTCAATGCCCCACTTGGAGAATCAGAAACTGCCGTTGGTGTTGGCACGGTGGGGTCTTCAGAGGCCATCATGTTGGCTG GATTGGCATTCAAGAGGAAGTGGCAAAACAAAAGGAGAAGTGAAGGCAAACCTGTTGACAATCCCAACATTGTCACTGGT GCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTTAAGCTGAGTGAAGGTTA CTATGTAATGGACCCCGAAAAGGCTGTGGAAATGGTGGATCAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACAC TAAATGGAGAGTTTGAAGATGTCAAATGCCTAAACGATCTCCTCATAAAAAAAAATAACGAAACAGGATGGGACACTCCT ATTCATGTGGATGCAGCAAGTGGTGGATTCATTGCTCCATTTCTCTATCCAGAGCTTGAGTGGGATTTCCGTTTACCACT AGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTTGTCTATGCTGGCATTGGTTGGGTCATTTGGAGAAGCAAGG AAGACCTTCCTGAGGAACTCATCTTTCACATTAACTATCTTGGAGCTGATCAACCTACATTCACTCTCAACTTCTCCAAA GGTTCTAGCCAAGTTATTGCTCAGTACTACCAGCTAATTCGTTTGGGTCATGAGGGATACAGAAATGTAATGGAAAACTG CAAAGACAACATGGTGGTACTAAAGGAAGGTCTGGATAAAACAGGTCGCTTTGACATTGTGTCCAAAGATGAGGGTGTGC CATTGGTGGCATTCACTTTGAAGGACCACAGCAACTTCAATGAGTTCCAAGTCTCTGATATGCTGAGGCGCTATGGCTGG ATAGTGCCAGCATACACCATGCCCCCAGATGCAGAACATGTTACCGTGCTCCGCGTTGTGATCAGGGAGGACTTTTCCCG CACCCTCGCAGAGCGTCTCGTGATTGACATCACCAAAGTGTTGCATGAGCTGGATCTTCTCCCTGCAAGGGTGGTCACTA GCAGCACTGTTACTGTTATTGGAGAAGAAGCTGAGGACAGTGACGGCAACACAGTGGTGGTTGCTAAGAGGAGTGCTATG GAGACTCAGAGGGAAATCACTTCAGTTTGGAAGAAATTTGTGATGGAGAATAAGCAGAAGAAGATGAATCTCGTCTGTTA G
Protein sequence (LotjaGi1g1v0099000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSKIASEMDVSIHSTFASRYVRTALPRFKMAEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASI NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRRSEGKPVDNPNIVTG ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDQNTICVAAILGSTLNGEFEDVKCLNDLLIKKNNETGWDTP IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSK GSSQVIAQYYQLIRLGHEGYRNVMENCKDNMVVLKEGLDKTGRFDIVSKDEGVPLVAFTLKDHSNFNEFQVSDMLRRYGW IVPAYTMPPDAEHVTVLRVVIREDFSRTLAERLVIDITKVLHELDLLPARVVTSSTVTVIGEEAEDSDGNTVVVAKRSAM ETQREITSVWKKFVMENKQKKMNLVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 506 | 506 | 0.0 | – | |
| PANTHER | 1 | 506 | 506 | 0.0 | ||
| SUPERFAMILY | 15 | 444 | 430 | 3.95E-130 | ||
| TIGRFAM | 16 | 444 | 429 | 1.8E-207 | ||
| Pfam | 37 | 381 | 345 | 3.7E-106 | ||
| Gene3D | 66 | 360 | 295 | 5.7E-86 | ||
| Gene3D | 361 | 448 | 88 | 9.4E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glutamate decarboxylase activity | Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2. | ||
| Biological process | Glutamate metabolic process | The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi1g1v0099000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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