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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0099800 |
| Transcript ID | LotjaGi1g1v0099800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT3G03220.1 expansin A13; Swiss-Prot: sp|Q9M9P0|EXP13_ARATH Expansin-A13; TrEMBL-Plants: tr|I1JHS2|I1JHS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0099800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15205821..15209754) extracted from Lotus japonicus Gifu genome v1.2.
CTTACAATGACACTTATAGATCGTCTACCAACACTAGCTACGAGAATCGATCACAGCCTTTTGAATAGAAATGATTCGTT ATTAGCAAGTAAGTCAAATTGGTCATTAAAATTGATACTTACATAAACATGGTTTTCAAATTGTAAATCAAACCAGTCAT CAAAAAAGCAAAAGCACAGTGCCATTGTCGGTAGTAAATAAAGCAAAAGCAACTCATAATCCATCACTGTCTCTTCTTCT TCTTCTTCCACTGATCTCTCTCTGTTCTCCCTCCCTTCTCCGTCTCCACTGAGAAATGTCACTTCCCACTGCATCATTTC TCATCACCCTCCTCTTCACCACAGTCACCTCTCACTACTCCTTCTCTACATCTCCCAACCCACCACGATCTTCCTCTTCC TCTTCCTCCTCATGGTCCTCCCTCTCCGAATGGCGATCTGCACGCGCCACCTACTACGCTGCAGCGGATCCGCGTGACGC TGTAGGCGGCGCGTGCGGCTACGGCGACCTCTTAAAAACTGGCTACGGCATGGCCACGGCGGGGCTGAGTGAGACGCTGT TTGAACGGGGGCAGATCTGCGGCGCGTGTTTTGAGCTCCGGTGTGTGGAGGATAGTCGGTGGTGTTTACCTGGGACGAGC ATCATTGTCACCGCCACGAACTTCTGTGCTCCGAACTATGGGTTTACGGCGGAGGGAGGTGGGCACTGTAATCCTCCGAA TAACCATTTTGTTCTTCCCATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCTGGGAATATGCCGCTTCAGTATCGCA GGTAGTTTTCTTGCTTGTTGTTGTTGCATGTTGCTATGGTTGGTAATGGTAGCTTACTGTTTAGGTGATGAAATTGAATA TACATGTTTTGATTAGTTTCTGAATTTATATTGAAAATCATGAAGTGTGTTGAGACATAATTAGGAAATAATTGAAGACT AGCACTTGAAGCTTTGGATTGAGTTATGAACCAGCTAACTTTGAAGTTGAAATTTTTTGAAGTTGAGGGTTTAGTTTAGC TTGTTAATAGGTTGATCATTTTGTTTCCTTTTATCTTCTATTTTATTAAGGTAGTTTTAAGTTTGTTAATTTAGTGTTTA AGAGACATTTTCATGTTTATAAGATGAAAGTTTAAATAGGAAGAGAAACAGAGCAAGAGAGTATTTAAGTATGGAAGTTA GCTACTTAGAACTTTGCAGACCAAATTATAATTTAGTAAGGAATTTAAATATATAATTATTGTTGTTAGTAACTGTGTTT TAGTGTCAAGTATAGAAAGCTAGTGCTGCTTGCTGCACAATAATTTGTGCACTTATCTGAAATTAAGTAACTGCAAGTCT GCTGCTGCAACCTCTGTTGGTAAACAAAATGTTTTCATCAATTAATTCACAATTTTAAAAGGTGTAAAAGGATATAGGCG CAAACAATGGTTAGTTGGTTGAATATAAGGTTGACGGATTAGTATTCTCTAATGTCGCATGACATGTTTGGTTGTTTAAA GGAACACAAGATTGTCGGTACTTAGATTTTAGAGTGGGGTTGATGTCAATAATTAGTTCTGATTGAAGTAGGTGCTGATA CGGGGTAAAGGAATCTGCAACAGGCTAACAACATAGTTCAAGCTACAACTTTGAAATCTTAAATGCTAGTTCTAGTTAAG AAGATTCATGAAGTCCCAGAAAGGGTTTTCATGATACAACCTATGTTTGTTGGATGTCTAATCCCATTCGCAAATTTTGT CGAATTTACTTGTCATTGGCCTCTTAATTGGTGCATAGTTTTTTCTCTCTGGACATATCAAGAGCTTAAATTGTGAAAAA AGCTTTGTACATTAGTTTGCTTTTCCAATACTAATGAAATTAAGTAGTAAAGGGATGATAGTGTCATAGTGATTCAATTG AACCAGAGGAAATTAGGAGAATGACCAGTTTATTTATGTCAGAACTCCGAAGAGCTTAATGAACCCCCCCCCCCCCCCTT CCCATTATGAATATGTAGCTAGCTGTCAGCTAATGAGAATAATGCCACGATAAACCTCTCTCAACAAAGTGGGGTACACT ACATAGAGTGAAGTTATAAGTTAGTTTTGGCATGCCTTCATACCTGTTATCGCAAAAAGATATTTGGTGCATTCTTGTAG AAAAAGGAGGAAACTGCATATAATTATGTTAATAACTAAATGATGTAGTTTCCATGGGTTTTATTCCAAGTCACTAATAA AGGAACTTGTAAGTGAAGGTAAATACTTCCACAAAAGTCCTTATTTTATATTTACTTACAACAACAAGGATAACAATGAA GCCTTTTTCCACTAGGTGGAGTAGGTTGTGTAGATCACATAACACCTTACTGTTCTGTCATGAATCTTGTTAATGACAAA CAAACTATTTAAATGCAAATCATTCTTAATGGTCTGATTTGTAGTTTTTTTGTCTTTGCTTTAAAGATCCGAAGTTGACT AGAGATATGACTAAAGTAGTCCTTATATATATAGGCTCGGGGAATCCTCCCCTCTCGAGCTAGTTTTTGGAGTTAAGCCC ATCTGAGATTATAAGATGACATCAAAACTTATACTAGATATGATTTTGGGCCCAAAACTTAACCCACCTCATTGCTGCTG CGGGTGTTAGAAAAACCGTAGTTTCCTTCATTGCAGCTAGGGTGGGTGTGTTAATATCCCAGACTAGAGTATGACCAAAG CAGTCCTTATTAAGGCTCAAACCATATAAGGCAAGACTTCACTAGTTTTTTCACAGTAGTAGTACTACCTCAACTTTCTC TCTTATACTTTTATTGTTCTATGTGAATGCTCATTAATTCTAACATTCTCATCTCTGCATCATTGAGCTTACTTGTAGAA TTGAGAATCATATGATGGATGAGTGATTACAAAGATAAGAAAAATAAAATAGATTGTACGTGGAAGTTAGAAACTAGTTT TGTCATCGTACTATTTATTCTGAATGTTATGTTCTTCTTGGAATAGGATAAACTGCAGAAGAGAAGGTGGAATCCGATTT ACAGTCACTGGTTCTGGTATCTTCATTTCAGTGCTAATCAGCAATGTTGCTGGACACGGAGACATAGTAGCGGTGAAGGT TAAGGGTTCAAGAACTGGTTGGCTTCAAATGGGTCGCAATTGGGGTCAAAACTGGCATATAAATGCATTATTACAGAATC AACCTCTTTCATTTGAGGTTACTGGTAGTGATGGGAAAACAGTTACGTCTTACAATGCTGCTCCCAAGGATTGGAGTTTT GGACAAACCTTTGAAGGCAAGCAATTTGAAACTTAAAAGCATAATGAAGAAAGCTTGTTTCCCAGGGACCTATCTCCTTC CTTTCATAATCCTTTTTTTTTTTACCTCGATAGCGATAGAAGGTAGTGGTTTTCTTTTACCTTTAAATTCTTTTGGTTTT GTAGGAGACTGTAGATAGCAAATGGTTTGGTGGTTTGCAAGCTTGTCAATGTGACAGTGTATCTTTCCATTTATTATCTT AGGTTATTGTATGAAAATATACCTTGTGGGTCAACCAACCCCAGAGAAGTAAATGTTGTGAGGCTCTTATTAGGACGTAT GATCTTACTAACTTCATTTACAAGTTGTCTTCACTTCAATATTACTACATCATCCAACCCCCATTAACGATACAACCCAG CATATTATATTGTATAATGGTATATATGATAGATTTCCACTGAAACTGTAATCAAAATCCTGGCAACAGATACATAATTT TGGGTGAATTTTTTGTGTAGAATCTGGATGGGCCTTTAGTTAAAACTTTTTACTCTAATATATTCGCTTTGTAATCACCG ATAGCCAGTTATTAGTCTGTTATTTTTCCCGCTATCTGCCTACTACAGCTGAACTCCAAAGCATTGAAAATTCACAGCAT GTTTGGTAATCTAT
CDS sequence (LotjaGi1g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTTCCCACTGCATCATTTCTCATCACCCTCCTCTTCACCACAGTCACCTCTCACTACTCCTTCTCTACATCTCC CAACCCACCACGATCTTCCTCTTCCTCTTCCTCCTCATGGTCCTCCCTCTCCGAATGGCGATCTGCACGCGCCACCTACT ACGCTGCAGCGGATCCGCGTGACGCTGTAGGCGGCGCGTGCGGCTACGGCGACCTCTTAAAAACTGGCTACGGCATGGCC ACGGCGGGGCTGAGTGAGACGCTGTTTGAACGGGGGCAGATCTGCGGCGCGTGTTTTGAGCTCCGGTGTGTGGAGGATAG TCGGTGGTGTTTACCTGGGACGAGCATCATTGTCACCGCCACGAACTTCTGTGCTCCGAACTATGGGTTTACGGCGGAGG GAGGTGGGCACTGTAATCCTCCGAATAACCATTTTGTTCTTCCCATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCT GGGAATATGCCGCTTCAGTATCGCAGGATAAACTGCAGAAGAGAAGGTGGAATCCGATTTACAGTCACTGGTTCTGGTAT CTTCATTTCAGTGCTAATCAGCAATGTTGCTGGACACGGAGACATAGTAGCGGTGAAGGTTAAGGGTTCAAGAACTGGTT GGCTTCAAATGGGTCGCAATTGGGGTCAAAACTGGCATATAAATGCATTATTACAGAATCAACCTCTTTCATTTGAGGTT ACTGGTAGTGATGGGAAAACAGTTACGTCTTACAATGCTGCTCCCAAGGATTGGAGTTTTGGACAAACCTTTGAAGGCAA GCAATTTGAAACTTAA
Protein sequence (LotjaGi1g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLPTASFLITLLFTTVTSHYSFSTSPNPPRSSSSSSSSWSSLSEWRSARATYYAAADPRDAVGGACGYGDLLKTGYGMA TAGLSETLFERGQICGACFELRCVEDSRWCLPGTSIIVTATNFCAPNYGFTAEGGGHCNPPNNHFVLPIEAFEKIAIWKA GNMPLQYRRINCRREGGIRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEV TGSDGKTVTSYNAAPKDWSFGQTFEGKQFET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 271 | 252 | - | – | |
| Gene3D | 28 | 173 | 146 | 3.9E-37 | ||
| PANTHER | 32 | 270 | 239 | 1.2E-142 | – | |
| PANTHER | 32 | 270 | 239 | 1.2E-142 | – | |
| SUPERFAMILY | 42 | 195 | 154 | 5.93E-44 | ||
| PRINTS | 45 | 60 | 16 | 4.2E-36 | ||
| PRINTS | 63 | 81 | 19 | 4.2E-36 | ||
| ProSiteProfiles | 64 | 177 | 114 | 26.858 | ||
| PRINTS | 76 | 90 | 15 | 2.8E-55 | ||
| SMART | 81 | 167 | 87 | 6.1E-38 | ||
| Pfam | 82 | 167 | 86 | 1.7E-17 | ||
| PRINTS | 85 | 103 | 19 | 4.2E-36 | ||
| PRINTS | 103 | 114 | 12 | 2.8E-55 | ||
| PRINTS | 116 | 126 | 11 | 2.8E-55 | ||
| PRINTS | 135 | 152 | 18 | 2.8E-55 | ||
| PRINTS | 152 | 165 | 14 | 2.8E-55 | ||
| PRINTS | 160 | 176 | 17 | 4.2E-36 | ||
| SUPERFAMILY | 174 | 266 | 93 | 6.15E-32 | ||
| PRINTS | 176 | 188 | 13 | 2.8E-55 | ||
| Gene3D | 177 | 269 | 93 | 3.6E-23 | ||
| Pfam | 178 | 255 | 78 | 8.6E-25 | ||
| ProSiteProfiles | 187 | 266 | 80 | 21.237 | ||
| PRINTS | 188 | 209 | 22 | 2.8E-55 | ||
| PRINTS | 214 | 228 | 15 | 4.2E-36 | ||
| PRINTS | 223 | 244 | 22 | 2.8E-55 | ||
| PRINTS | 252 | 268 | 17 | 2.8E-55 | ||
| PRINTS | 252 | 266 | 15 | 4.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0099800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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