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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0100600 |
| Transcript ID | LotjaGi1g1v0100600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S730|A0A0B2S730_GLYSO Phytoene synthase, chloroplastic; Found in the gene: LotjaGi1g1v0100600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15279324..15285473) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATTTCAATGTGCCAAAAAATGACATACACATACGTATACATTTTTGACTGATTAAATTTTGTTCCACAACATTTT TGACTGAAAATTTGAGTATCGTTCAATGTGATTTCAAATATATTAACTCAATAATCAAAATCCCAAAAGAGTTTAATTTT GATGCACTGATAGTGTGAAGCTTTTTTACACCGTCAACCAATCAGATTCCAAAGATTTTCTCAGTAAATTTAATTAAATA AAAAATCAATCTTTCTGACATTTAAAAAATCTAATTGGTTGACGCGTTGACGGTGTAAAAAAGCTTTACACCGTCAGTGT ATCAAACTTTTTTTATCCTAAAAGTTGAGGGAATGTAATGTTATTTACTAAGATTATGCGCATGTATGGATACATAATAT GTACATATCGTAGTGGTTAAAATTACTACAAGGAGTTGTGGCCTTTAGAAGCTCTCCCACGATGCAAGGAGGTGGCGTGG CGTGCGACGATGGGTATTCTTCCGGTCTGGCAAGATCTTCGGGTTCAAGGGGTGGACGTTGAGGAGCTTTGTCCTTTCTA TAATGAGCATCCAGAAACTATTAGCCATGCTTTGTTTATGTGTTCAATTGTCTCTTGGTGGTGGTATGCGTTTTTTGATT GTGCGCTGGTGAGTTTCTACAGCACAGTGATGAGCATGTTGCATAGTTTTCTTGAGTTGGGGGATCCAAACGTTGTTGGT GCATGCCTTACATTTATGTATGTCGTGTGGGAAGCACGAAACATGTTGCTATTTCAAGGACAAGTTCCTGTAGTCGAAGA CATCATCTATCGGTTGTGCTCTTTGAATGCCTCTCCGAGTCACCTGTACGTTAGAAGAGACCAGGTCCTAGGGTGGTAAA GATAAACTTTGATGTGTATTTATACCTTTAAAAGTTGTTGGGTTGGGTTTTGTGGCTAGAAACAACAATGGCGAAGTCAT GGCAGCAGGGACATCGTATCCCGCCGAAGCCTCTTCCCTCGGAGGTTTTGGCTTTTTGATGGTTGCTTGTTTTGGCTCTT AATTTGTTTTTCTTGAATATTTGGGCGGAAACTGACTGCTTGCAACTCTACGAAGCTTGACAAAAGTCTTTGGAAGGAGC ATCTTATTTTATTTCTATTCTTAAGGATTGTAGACTTTTGATTTCTTCATTTAATAATTTTCTGTTATCTTAGTTCACCG ATCAGGTAATTCTACGGCTGATCACTTGACCAAGAACTCCTCAAGGTATTCAAATTCTATGGGGATTGAGGAAGTACCCC TAGACTGTGCTTCTTTAATTGAGTCATATGTACCTACCTCTATCACCTTTTAGTTGTTCAATATATTTATCCACGTTTAA AAATAAATTGTACAAAATTTTATTTTGACCTTTTTAAATTACTAAAAAGTAAAAACACAAAACAAAACAAAACCGCAATA AGAGTAGCAAGCTACCGGTTTGGGCAAACCCGACCCATTCCAAGTGGATGGGGGAACAAAGTGGAGGATGACATAAAGCA GCAACATGCTCCAAACTTGAGGACAAGCTTCGTGGTGAACACAGAACCAGACAATTAGACAGTGGTTATCAAATCCCATT ACAGATGTAGAAAGCTTTGATAGAATATAAAATAGGCACTTTCTCATACAAAAGGTTTCAATCTTTGTTAAAAAAGAGAC AATATAAAGAATTATTACAACCTGGGTCTCTGGAAGAGTGGAGAGCTTGGTGGGTCACAATCACATAGTGAAGTTGTGAA AGGAAGGAAAATTTGCTCTTTCTTTAATGGCCGTTGTTAGTTTTTGCTCCATGATGTTGATGCCTCATGTCATGTGAGTG GGTCAATGACTCAAACCAACACAACAACAAGGTTGGTGCTTCTTGTTTCTTTCTTATTACTTACATAAATGCTATTCAGG TTCAGTTTTCGTGTAGCTTTGGGAACTTCACGTTTCTAAGCTAATTTGGTGCTGGAATTGATGAAAAACTCATAGGAGCA AAATACCAAACACAACAACCTGTTGCTTCATACTTCCTCTGTGACCACTAGAACTCTTTCTTTTTCTTGATTATTATTGA TATTTGAAATGCCCATTATGTGAGTTCTTGGTTTATCTAATCAAAATGTTATCTTTTTTAGTTTGGATATGATGGGTCTG ATGTACTCAATATGATGATGCTTGTTTTGGTTTAATCACAGATAGCTTGCTGGAATTGTTTGGATTAAAGCCTTTGCTTT TGTTTTCAACTGGGTTTCTTTTGATTGAAGAAAGCTTAGTGGCTGTTTGAATTTGAAGGATTGATATTTGAGGAATAGGA AGTGAAGAAGGAAACAGGTTAAGCTGAACAAGAAGGTTGCTGAAACCACAGAGTTTAGCCATGTCTGTGACATTATTTTG GGTTGCCTCCTTCCCTAACTTACAAGTATCCAATTCCACTAGGTTACTTGATTCTATTCGAGATGTGAGGCTCTTTGATT CTTCGAAGTTCATGTCGCGGGATTTTAGGTCAATTAGAGCAAAGAAGGATAGGAAGAAGAGATGGAGGTTTTGCTCTTTG AGTACTGGTGTGAAGTATGCATGTGTTGGTCAGTCTGGTTTAGAGAGTGCTAGTAGCTTCCCTATGATATCGAATGTGCT GGCGAACCCGGCTGCAGCAGAAGTGGCTGTTTCGTCAGAACAGAAGGTCTATGATGTGGTGCTGAAGCAGGCTTCTTTGA TTAAGAGGAAGCTCTCCGCCGGCGATCATGGGGTGAAACAGAATGTTTTTCTGCCTGGGAATTTGAGCTTGTTGAGTGAA GCTTATGACCGTTGCGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACCTGGGTTAGCTTTCTCTTATCTTTCCCTC AAGTGAGGATGTTAACTTTAGATTCTATTTGGGTTTGTAGCATGGCTTAAGTCTAACTGACACGGGGTTTTGTCTTTCAG GAACTCTCTTGATGACTCCGGAAAGGCGAAGAGCTATCTGGGCAATTTATGGTGAGTGATCATGCTCTTATCAGGATCTC TTTCTCTGTCTCTAAGTTATTTCTTTTTATTTTATAAAAATAATATTAGTTTTCATGATTATCAGAATTTTAGGCATAAC TAGACTGCAAATGGAATCCACTGTAAAATTTTAACTATAGTTGGACTCTAATCCAGAAATTAAGTTAAGAAGGCATTTCC TAAGCTGTAGTAATCCTTATGGGTTTATAAGTCAAGGAGAATCTGGTTATGCTCTATTAGCATGTTTGAAGATCCTTCTA CAATTGATTATAAAGTCAAACTTAATTCTGGAGAGAAGCTTCTTTGAGTAGCTTTTGGGTGTCAGAATTGATTCTTAGAA AAATTATGCTTATCAAAACATGCTATATATTGTCATGTACTAAGTAGGTTTTGTAAGCTTATTGTGCAAGACTGCTCTTG TATCAAGTAATTTCATTTTCCCTGATCAGTCAAATTCCACTGCCTTTTCAGTGTGGTGTAGGAGAACAGATGAACTTGTT GATGGCCCTAATGCGTCACATATTACACCAACTGCTTTGGATAGGTGGGAATCAAGATTGGAAGAACTTTTCCAAGGTCG TCCATTTGATATGCTTGATGCTGCTGTATCAGATACAGTTACCAAATTTCCTGTTGACATCCAGGTATTGATCGATTTTG TGACCGAATGAGATTGGCAGGCACATAATTGTCATTTTTTTTAAGAATTCTCTATGATATAATATATATTATGTAGCCTT TGATGAGAACGACCTCTACTTGCTCCTAATTCTTTCATTAGTGCACTGATCAGATCCACATTTTACCTTGCTATGAATAC CTTTATAGAGAGTAACCAAAAAATCTGCAGTCTATGGAGTCCAAACTTTTCTCTATGCTTTTGTCCAAATCAGACTTCTT TACTCCTCATGATATAAACTGTTTCACTCTTAATTTGAATTCCATAATAAAGTTCAATTCAAGCCATTGGGGAAAATTTT AGAATGGGTTGCACTCTGTGCATGTAATATGCCTGAGATCCTTTTAATGAGCCATATACTTATTAAGTAGAGCCAGAGAG TGATGAAAACGCCCTTAACTTCTGGTCAAATGTTTTTTGAATTTATTTGAAAAATTCACTGCCTGTATTTTTGATTAATT TCTTGTCAACCAACCTGTATCATGATTTTGTGAAACCTTCAATTATTTTTGGTTACTTATAACATGCTTGTGAATTTGAT ATGTGCGACTTCAATGTTGGAGGAGTTATTTTCCTTATCTTTTATTGGTTTCCGTGCAGCCATTTAAAGATATGATAGAA GGAATGAGAACGGATCTTAGGAAGTCAAGATACAAGAACTTTGATGAACTATATCTCTATTGTTACTATGTTGCTGGCAC AGTTGGTTTAATGAGTGTTCCGATCATGGGCATTTCACCGGATTCACAGACCTCAACGGAGAGTGTGTACAACGCTGCCT TGGCCCTAGGAATTGCAAATCAACTAACCAACATCCTTAGAGATGTTGGAGAGGAGTAAGTTCCAGAATTACTGATATTT CAAGTCATATCAGAAATTGTTATGAAAAAAGTACTGGATTTTGCTTCGCTCTAAGATCAGGATCATAAGCACAATGTTGG TTTTTTCTCTGTTGATGATTTCAAGAATGACCCTGCATTTCATTATGACTCCACCTTTCTTATTACATGTTCGATTTTCA ACAGTGCCAGCAGAGGAAGAGTGTATCTACCACAAGATGAGTTGGCTCAGGCAGGGCTTTCGGAAGATGACATATTTGCC GGCAAGGTGACCGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCAAGAATGTTTTTTGATGAGGCAGAAAA GGGAGTGATGGAGCTTAATAAAGCTAGCAGATGGCCGGTAAGAAATGCAATCATTTTTCACTATACTTAACTTGCCAATA TGATGACAGTGTAATTTTGAATGTCAAAGATGAGTTTAAATGTTGATAGTGCATGTATGGCATTGATTCTAAAGGGTTAC CCTCATGTTTTAAAGTAAGAATACATGTCTTCCTAGAAAGATTAAGGTAGTTGTAGAACATGCAAAACAAGTTACTCGGT AGATTTTCTTATTGAGGGAGAAGTGATTTTGAGAGAAGCTAAACTTAGTGAGTTTGGTTCCATATTTGGAGTCTTAAAAT CAAATTCTCTTTGACTAGAATTACTTTTAGGTGGCTATATACAGGTTTGGCAACTGACATAGAGAATTGGTTTTGGCAAT ATGAATTCTCGGAGAAGCTAGAGAGACTGAGAGTGTAACTTTTGTAGTGGGCATAATCAATAGTGAGATTTTATAACTGG AATTCACAATGTTACCCTATAGAAATCACTTTTCCCATAAACACATCCGAACATAAATCACTCCACTTCCAACTCACTTG TAAATCAATTATATCCATATTCAATTCTGACCACGCTGAACCGAGCACATGCACTTTCTGAGGGAAAAATTATTAGGCAA AGTTTAAACATGAAATCAAATATAATATTAGGATAACTTCTATGCAGGGCCCTCTATTCTTTTTATCCATGATTTAACTC TCACTTGTGAACACCAAAATGGTGTTGTGGCTGTTGCAGGTATTGGCGTCTTTGCTTTTGTATCGCCAGATATTGGATGA GATTGAAGCTAATGATTACAACAATTTCACTAAGAGGGCTTATGTGAGCAAAACCAAGAAATTACTTTCCTTACCAGCTG CCTATGCTAGAACTATGGTTGCCCCACCAAGAAAGTTATCTCATGTAATGAAGGCATAGATCCTTACACTATATACAGTT ATGTAGAAAAATTGGAGGAGGACAAACAAAAAGGAAAAGCACAATTTGTATATGATAATAATATAAGCTTGTACTTGTTA TCCACTAGTTGTAGTTAATATTGGTTTTCCTATTTTCAATTTTTTCTTCTTTTTAGAGCTAATAAATTATCAGCCTCGTC CATTCTACTGAATTATTCAGGATGTCTCACATTTTATTAGAATTTAAAGGGCTAGGGGTTTGAATCCTAGGGTCATTAAT CTGGGGAGAGCTTTTCCTAACTATTACTCCCTCCATTCTAAAGTATAAGTTGTTTAAGGTTACATACGGG
CDS sequence (LotjaGi1g1v0100600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTGACATTATTTTGGGTTGCCTCCTTCCCTAACTTACAAGTATCCAATTCCACTAGGTTACTTGATTCTATTCG AGATGTGAGGCTCTTTGATTCTTCGAAGTTCATGTCGCGGGATTTTAGGTCAATTAGAGCAAAGAAGGATAGGAAGAAGA GATGGAGGTTTTGCTCTTTGAGTACTGGTGTGAAGTATGCATGTGTTGGTCAGTCTGGTTTAGAGAGTGCTAGTAGCTTC CCTATGATATCGAATGTGCTGGCGAACCCGGCTGCAGCAGAAGTGGCTGTTTCGTCAGAACAGAAGGTCTATGATGTGGT GCTGAAGCAGGCTTCTTTGATTAAGAGGAAGCTCTCCGCCGGCGATCATGGGGTGAAACAGAATGTTTTTCTGCCTGGGA ATTTGAGCTTGTTGAGTGAAGCTTATGACCGTTGCGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACCTGGGAACT CTCTTGATGACTCCGGAAAGGCGAAGAGCTATCTGGGCAATTTATGTGTGGTGTAGGAGAACAGATGAACTTGTTGATGG CCCTAATGCGTCACATATTACACCAACTGCTTTGGATAGGTGGGAATCAAGATTGGAAGAACTTTTCCAAGGTCGTCCAT TTGATATGCTTGATGCTGCTGTATCAGATACAGTTACCAAATTTCCTGTTGACATCCAGCCATTTAAAGATATGATAGAA GGAATGAGAACGGATCTTAGGAAGTCAAGATACAAGAACTTTGATGAACTATATCTCTATTGTTACTATGTTGCTGGCAC AGTTGGTTTAATGAGTGTTCCGATCATGGGCATTTCACCGGATTCACAGACCTCAACGGAGAGTGTGTACAACGCTGCCT TGGCCCTAGGAATTGCAAATCAACTAACCAACATCCTTAGAGATGTTGGAGAGGATGCCAGCAGAGGAAGAGTGTATCTA CCACAAGATGAGTTGGCTCAGGCAGGGCTTTCGGAAGATGACATATTTGCCGGCAAGGTGACCGACAAGTGGAGGAACTT CATGAAGAGCCAAATTAAAAGGGCAAGAATGTTTTTTGATGAGGCAGAAAAGGGAGTGATGGAGCTTAATAAAGCTAGCA GATGGCCGGTATTGGCGTCTTTGCTTTTGTATCGCCAGATATTGGATGAGATTGAAGCTAATGATTACAACAATTTCACT AAGAGGGCTTATGTGAGCAAAACCAAGAAATTACTTTCCTTACCAGCTGCCTATGCTAGAACTATGGTTGCCCCACCAAG AAAGTTATCTCATGTAATGAAGGCATAG
Protein sequence (LotjaGi1g1v0100600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTLFWVASFPNLQVSNSTRLLDSIRDVRLFDSSKFMSRDFRSIRAKKDRKKRWRFCSLSTGVKYACVGQSGLESASSF PMISNVLANPAAAEVAVSSEQKVYDVVLKQASLIKRKLSAGDHGVKQNVFLPGNLSLLSEAYDRCGEICAEYAKTFYLGT LLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPTALDRWESRLEELFQGRPFDMLDAAVSDTVTKFPVDIQPFKDMIE GMRTDLRKSRYKNFDELYLYCYYVAGTVGLMSVPIMGISPDSQTSTESVYNAALALGIANQLTNILRDVGEDASRGRVYL PQDELAQAGLSEDDIFAGKVTDKWRNFMKSQIKRARMFFDEAEKGVMELNKASRWPVLASLLLYRQILDEIEANDYNNFT KRAYVSKTKKLLSLPAAYARTMVAPPRKLSHVMKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 431 | 431 | 2.5E-211 | – | |
| Phobius | 1 | 256 | 256 | - | – | |
| PANTHER | 1 | 431 | 431 | 2.5E-211 | – | |
| Gene3D | 133 | 414 | 282 | 2.6E-104 | ||
| SFLD | 139 | 421 | 283 | 0.0 | – | |
| SFLD | 139 | 421 | 283 | 0.0 | ||
| SUPERFAMILY | 141 | 423 | 283 | 2.59E-91 | ||
| CDD | 143 | 410 | 268 | 3.40641E-111 | ||
| Pfam | 152 | 407 | 256 | 1.1E-72 | – | |
| Phobius | 257 | 278 | 22 | - | – | |
| ProSitePatterns | 260 | 275 | 16 | - | ||
| Phobius | 279 | 435 | 157 | - | – | |
| ProSitePatterns | 296 | 321 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of LotjaGi1g1v0100600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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