Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0101200.1

Overview

Field Value
Gene ID LotjaGi1g1v0101200
Transcript ID LotjaGi1g1v0101200.1
Lotus japonicus genome version Gifu v1.2
Description p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|G7KFQ2|G7KFQ2_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:15352980..15357581) extracted from Lotus japonicus Gifu genome v1.2.

AAGTGAGTGATTTTGTTTTTGGTTTTCCTAATCTTTGCTTTACCATATAGTTGAGAAAGAGGTGATCGGTGCAAGTTGAC AAGATGGAGAAGACTTGTAGTACAAGGGAGGAAGACATTCTCAAAGTGGGCCTCTTAGACATCGTGTTTTCATGGACTCT CGACCATGTTCTGAACGAAAATCTTCTGAAAAACAAGGTACTTAATTTTTCTCCTCACTAGTCTCTTGAAAAAAACCTCT GTCAAAATCTCCATATATATATTTGACACATGAAAAATCACAGATTCTCCACTTTAGTGTTACTGTTTTTGTTTAAAACT GCATAAGATATAAACCACTAGTATGACATTCATAGAGAATTTTGTTTTTTCTAAGGTCTCAAATAACCTCTTATATTTTC TTAATATGCTAACAATGCCTTAATTTTGATTATTCAATGGAGGGAGAGGAGAGGAAAGGAGGAGAAGGGCAAATAACTTT GCTTGTTTAGAGGTTTTGAGACAAATTTACTTTTGGAACTCAGAAGTCAGAATTAGATTTTAAAATATGAATTAAGGATA TTTTATTACATGATTTATTTTCCTTACAAACACTCCAATTTCATGTAAAATTTTAGTACTTTTTCTTATGTGTGCTGGTT TCAACCGATGATATGTTGGTGGAAGACATTCTCCAAACCAACAAAATTTCATTAGTTTGATAGTACACAAAATTTCATTA GTTTGATAGCACTTTGAAACACATTGTCATCTATTTCTCAGGTGCAGAAGATACCAGAGACGTTCAACTCCACCAGAGAT TTTGTGAAATCTGGAGTGTTGAAAGAGACAGAAAGAGCTTCAAACTTCCCAAAGCCTTGTTCTATGAGATGCTGTTGAAG GTTAAAACTGATGAAGTGGAAGAAGATATTGGAGAATATGTGCCTGAGTCTGGGGATCTCATTGCTTTCGCTGAAATAAG GCCCAAAAACGTATATGACTTGAAAAAGCCAGAAAGTAATTACTACCATCTCGCTTATGTTCTTGGGCCAAAAGATGTAG AATATCCTAATGAGTTATCTATACTGTCATCAAAATCCATAAAGATAGACATTGAGTATGGCTTGAGGGGTGATGAAAAA CAGAAATTCTATGCAATTTACCTTTTGAACTTAACAACAAATATTCGTATTTGGAAAGCATTGAATTTTCAGTTGGAGGG TCAAACCATGAGCATGATTAGGAAAGTGCTGCAAACTGATTTAAATGTAAGACCCACTAGATCTTTTCCTTTATAAAGTT TCATACTTATACAATCATGATTTACTTTGCTTACATGGGAAGTTACTTTGAAGTGCACTTGCATTATTGTGTTTTGTAAA GGACATGACATATCTATGTTAAATCCTTGAAAAGCTTGTCCTTCCCTCAATCTTCTACTAAATAAATTTTTCTTGTTCTC AGTTTCTCTCTCTCTCTCTCAACTTTTTTTTGAATGTAACATGTCTAATGCTTGGTTTATACGTCACAGGGAGGCGAAGA CTGTGAAATTTGCCCGTCAGGTGAAGATTGTCAAGCTCCTTCCATCATAAAGGACATAATTCGCTCTCAGATTCTGAATG ATTCTCAGGAAGATGCAGTGTTAACATGTGTTAATATGATGAATTGCAAGCATAACAACATTAAACTTATATGGGGCCCT CCAGGGACAGGCAAAACAAAGACAGTTGCTTGCTTATTATTTTCTCTTCTCAAGTTAAAAGCAAGAACATTAACTTGTGC ACCTACCAACACTGCTGTGTTGGAAGTGGCAACAAGGTTACATAGTTTAGTTAAAGGTTCAATTTCAAATGTTTATAAAG CATATGGGATGGGTAACATAGTTTTATTTGGAAATAAATCAAGAATGAAAGTGGATTCTTACCAGGGGCTTGGAGATGCG TTTCTTGATTATCGTGTAAAAAAACTTATGAAGTGCCTTGCTCCTTCATCTGGATGGAAGAATAGCTTGGAATCGATGAT CCGGTTGCTTGAGGACCCTAGAAAACAATATCTATTGTTTGAGAAAGAGAAAGGTCTTATGTCATTAGAAGAATTTGCTG ATCAAGAAGATAGTAATGTAGTACCTGCATATTATGCACACATGAAACATAAGGGTGATGATGACCAGATGACATTTGAG GAATTTGTGCAGATAAAATGGAAAGACATAGCAGAGAAGTACGAGTTGGCGAAAAATGATCTAAAGAAAACCATCTTGAC ATTGGAGGATTTTGTCAAGCAGCAATTCAGGGAATTAAGGGACAAGCTCAAGTCCTTCGTACATACCTTGTATACCCACT TACCAACATATATCATTGCACTTGAAACGGTGAAGGTAATGTTTAGAGTTCTGGTTTTGTTAAGGTCTCTTGAAATTTCC TTGAGTCAAGCTCAATTCAATCAAAATGAAGATGATAGTGATGAAGAAAGCATTCTAGTTTCCCTAGGATGGTCAAGCTT CAAAAGAGATGAGTGCCTTAGCCTACTAAATTCACTTTCTGAGTCAATTTCCCTTCCTGAGTATTCTTGGAGAGGTGATG TAGAAATTTTTTGCTTATCCATTGCATGCATAATTCTATGCACTGCATCAAGTTCTGTTAAACTATACACAGAACGGATG AGATCAGTGCAATTTCTAATAGTTGATGAAGCAGCCCAATTAAAGGAATGTGAATCAACCATTCCATTGCAGCTGCCTGG TCTCCACCATTGCATCCTAATAGGTGATGAGAAACAGCTTCCAGCATTGGTTAAAAGCAGGGTACTTAACTTTAGCATTG CCTTTTTTGTAATTTTAATTATAGATTCCCTGCCATCATGAAAGATTGCTATCTAACATGCTTAAAGTCCTTAAATTTTT AGACTGCAGATAATGCTGAATTTGGAAGAAGTTTGTTTCAGAGGCTGGTGCTCTTAGGATACAAGAAGCATATGCTTAAT GTTCAGTATCGGATGCATCCATCCATTAGCTTATTCCCATGCAAAGAGTTTTATGACGAAAAACTTACTGATGCCCCCAC TGTCAAGGAAGAAAGCTATAATAGGAGTTTCCTTGAAGGAGAAATGTTTGGTTCTTATTCTTTTATCCATATAGCAAAGG GGAAAGAACAGTTTGGTCGTGAACACAGTTTGAAGAACCAGGTTGAAGCTGCAGTTATTTCTGAGATAATTGGAAGCCTT AAAAAAGGTTAGTTTTATCTATGTGCTGTAACTTTATAAGAAATCTTCAGCTTCAATAATGCATGGTTCTGAGTAACACT GTTCTATTTTGTTTTGCCAGAGTTTATGAGGACTAGGAAGAAAATTAGCATTGGAATTATATCTCCCTATAATTCTCAAG TTTATGAAATCCAACAGAAAATTAAGCACCACATTTCAGTTTCTGATCCTGACTTCTCTGTCAGTGTTCGTTCGGTTGAT GGATTTCAAGGAGGGGAACAGGATGTTATAATAATTTCTACTGTGAGATCTAATCCTAGTGGAAAAGTGGGGTTTCTTTC CAATAGACAAAGAGCAAATGTTGCTATGACTAGGGCTAGGTATGTGATATTTCATGTTTATTTGTTTTTGTTGTGCTGCA GCTTCCAAGTTGATGGAAAAATGGGTTTATGCTTGTGCAGATATAGCCTTTGGATATTAGGAAATGCGGCAACACTGGTT AGCAGTGACACAGTGTGGAAGCAGGTAGTTCTTGATGCTAAGAAAAGAGATTGTTTCCATACAGCTGATAAGGACACTAA ACTGGCTCGGGTTATTGAAGATGTTGTTTTTGAGCTTGAACTACTTGAAGAATCTGAGTCGATGTTTAAGAAACTGAATC TAGGGGAGAGGTCTTCCAGGTATGTCGAACCATAATACCATAACAATTCACACACACACACACACATATATATATATATA TATATATATATATATATATATATGTTTTGAAGAGTGTACTTAAAAAGGTGATGATAGCATTTCTGTTGGTTAGTTTGCTG TATAAATGAACTTTATAATTGTAACCTACCGGATCTTCAAACATGCACTAATCTGTGGTGTTTGTTTTTGACAGGCCTCG GAAAGCACGGAGGTGATAATGTGAATCTCTCTGGTGAACTTAAAGTGAAGAGGTGTTAAGACCACTATGGACATGGAATC CTGAGGAGCATTTTTAGATTTTCAATCTTTGCGCAATGAACTGAAAGTTGTGATAGCATTTTGCAATGTAGTAAACTTAA TTCCCCATTCAAGGTTTTTGTTTTAAAAAAAAATTTAACACTCTGTATCTCTTTATTAGAGAGAGAGTGTTTCTTCAAAC TCGCAAAAACTTAAAGCATTTAAAATGACACCTAAAATGGTCAAGTGGGTTAGGCTTTTGTTTTTGTCAAATACCACACG ATAAAAACCGCTAATCTAATTGGGTCCAAACGGTAAGCCCAATTTCTCCATCTCGTGTCGTGTCGGTCGGAATACAATCT CAAAACAACATCAATGGCCCTGGCCCAAACCTAAAACTCATGAGGCCCATGTAGAAGCCCAAAACAAGATACAAAAAAGA AATATTGAAAATAAGAAAAATGCCAAGACCCCATTTGGAAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0101200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCTCGACCATGTTCTGAACGAAAATCTTCTGAAAAACAAGGTGCAGAAGATACCAGAGACGTTCAACTCCACCA GAGATTTTGTGAAATCTGGAGTGTTGAAAGAGACAGAAAGAGCTTCAAACTTCCCAAAGCCTTGTTCTATGAGATGCTGT TGAAGGTTAAAACTGATGAAGTGGAAGAAGATATTGGAGAATATGTGCCTGAGTCTGGGGATCTCATTGCTTTCGCTGAA ATAAGGCCCAAAAACGTATATGACTTGAAAAAGCCAGAAAGTAATTACTACCATCTCGCTTATGTTCTTGGGCCAAAAGA TGTAGAATATCCTAATGAGTTATCTATACTGTCATCAAAATCCATAAAGATAGACATTGAGTATGGCTTGAGGGGTGATG AAAAACAGAAATTCTATGCAATTTACCTTTTGAACTTAACAACAAATATTCGTATTTGGAAAGCATTGAATTTTCAGTTG GAGGGTCAAACCATGAGCATGATTAGGAAAGTGCTGCAAACTGATTTAAATGGAGGCGAAGACTGTGAAATTTGCCCGTC AGGTGAAGATTGTCAAGCTCCTTCCATCATAAAGGACATAATTCGCTCTCAGATTCTGAATGATTCTCAGGAAGATGCAG TGTTAACATGTGTTAATATGATGAATTGCAAGCATAACAACATTAAACTTATATGGGGCCCTCCAGGGACAGGCAAAACA AAGACAGTTGCTTGCTTATTATTTTCTCTTCTCAAGTTAAAAGCAAGAACATTAACTTGTGCACCTACCAACACTGCTGT GTTGGAAGTGGCAACAAGGTTACATAGTTTAGTTAAAGGTTCAATTTCAAATGTTTATAAAGCATATGGGATGGGTAACA TAGTTTTATTTGGAAATAAATCAAGAATGAAAGTGGATTCTTACCAGGGGCTTGGAGATGCGTTTCTTGATTATCGTGTA AAAAAACTTATGAAGTGCCTTGCTCCTTCATCTGGATGGAAGAATAGCTTGGAATCGATGATCCGGTTGCTTGAGGACCC TAGAAAACAATATCTATTGTTTGAGAAAGAGAAAGGTCTTATGTCATTAGAAGAATTTGCTGATCAAGAAGATAGTAATG TAGTACCTGCATATTATGCACACATGAAACATAAGGGTGATGATGACCAGATGACATTTGAGGAATTTGTGCAGATAAAA TGGAAAGACATAGCAGAGAAGTACGAGTTGGCGAAAAATGATCTAAAGAAAACCATCTTGACATTGGAGGATTTTGTCAA GCAGCAATTCAGGGAATTAAGGGACAAGCTCAAGTCCTTCGTACATACCTTGTATACCCACTTACCAACATATATCATTG CACTTGAAACGGTGAAGGTAATGTTTAGAGTTCTGGTTTTGTTAAGGTCTCTTGAAATTTCCTTGAGTCAAGCTCAATTC AATCAAAATGAAGATGATAGTGATGAAGAAAGCATTCTAGTTTCCCTAGGATGGTCAAGCTTCAAAAGAGATGAGTGCCT TAGCCTACTAAATTCACTTTCTGAGTCAATTTCCCTTCCTGAGTATTCTTGGAGAGGTGATGTAGAAATTTTTTGCTTAT CCATTGCATGCATAATTCTATGCACTGCATCAAGTTCTGTTAAACTATACACAGAACGGATGAGATCAGTGCAATTTCTA ATAGTTGATGAAGCAGCCCAATTAAAGGAATGTGAATCAACCATTCCATTGCAGCTGCCTGGTCTCCACCATTGCATCCT AATAGGTGATGAGAAACAGCTTCCAGCATTGGTTAAAAGCAGGACTGCAGATAATGCTGAATTTGGAAGAAGTTTGTTTC AGAGGCTGGTGCTCTTAGGATACAAGAAGCATATGCTTAATGTTCAGTATCGGATGCATCCATCCATTAGCTTATTCCCA TGCAAAGAGTTTTATGACGAAAAACTTACTGATGCCCCCACTGTCAAGGAAGAAAGCTATAATAGGAGTTTCCTTGAAGG AGAAATGTTTGGTTCTTATTCTTTTATCCATATAGCAAAGGGGAAAGAACAGTTTGGTCGTGAACACAGTTTGAAGAACC AGGTTGAAGCTGCAGTTATTTCTGAGATAATTGGAAGCCTTAAAAAAGAGTTTATGAGGACTAGGAAGAAAATTAGCATT GGAATTATATCTCCCTATAATTCTCAAGTTTATGAAATCCAACAGAAAATTAAGCACCACATTTCAGTTTCTGATCCTGA CTTCTCTGTCAGTGTTCGTTCGGTTGATGGATTTCAAGGAGGGGAACAGGATGTTATAATAATTTCTACTGTGAGATCTA ATCCTAGTGGAAAAGTGGGGTTTCTTTCCAATAGACAAAGAGCAAATGTTGCTATGACTAGGGCTAGATATAGCCTTTGG ATATTAGGAAATGCGGCAACACTGGTTAGCAGTGACACAGTGTGGAAGCAGGTAGTTCTTGATGCTAAGAAAAGAGATTG TTTCCATACAGCTGATAAGGACACTAAACTGGCTCGGGTTATTGAAGATGTTGTTTTTGAGCTTGAACTACTTGAAGAAT CTGAGTCGATGTTTAAGAAACTGAATCTAGGGGAGAGGTCTTCCAGGCCTCGGAAAGCACGGAGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0101200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSRPCSERKSSEKQGAEDTRDVQLHQRFCEIWSVERDRKSFKLPKALFYEMLLKVKTDEVEEDIGEYVPESGDLIAFAE IRPKNVYDLKKPESNYYHLAYVLGPKDVEYPNELSILSSKSIKIDIEYGLRGDEKQKFYAIYLLNLTTNIRIWKALNFQL EGQTMSMIRKVLQTDLNGGEDCEICPSGEDCQAPSIIKDIIRSQILNDSQEDAVLTCVNMMNCKHNNIKLIWGPPGTGKT KTVACLLFSLLKLKARTLTCAPTNTAVLEVATRLHSLVKGSISNVYKAYGMGNIVLFGNKSRMKVDSYQGLGDAFLDYRV KKLMKCLAPSSGWKNSLESMIRLLEDPRKQYLLFEKEKGLMSLEEFADQEDSNVVPAYYAHMKHKGDDDQMTFEEFVQIK WKDIAEKYELAKNDLKKTILTLEDFVKQQFRELRDKLKSFVHTLYTHLPTYIIALETVKVMFRVLVLLRSLEISLSQAQF NQNEDDSDEESILVSLGWSSFKRDECLSLLNSLSESISLPEYSWRGDVEIFCLSIACIILCTASSSVKLYTERMRSVQFL IVDEAAQLKECESTIPLQLPGLHHCILIGDEKQLPALVKSRTADNAEFGRSLFQRLVLLGYKKHMLNVQYRMHPSISLFP CKEFYDEKLTDAPTVKEESYNRSFLEGEMFGSYSFIHIAKGKEQFGREHSLKNQVEAAVISEIIGSLKKEFMRTRKKISI GIISPYNSQVYEIQQKIKHHISVSDPDFSVSVRSVDGFQGGEQDVIIISTVRSNPSGKVGFLSNRQRANVAMTRARYSLW ILGNAATLVSSDTVWKQVVLDAKKRDCFHTADKDTKLARVIEDVVFELELLEESESMFKKLNLGERSSRPRKARR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 - –
PANTHER
PTHR10887:SF469
28 862 835 0.0 –
PANTHER
PTHR10887
28 862 835 0.0 –
Pfam
PF13086
206 601 396 2.1E-34
IPR041677
CDD
cd18042
206 274 69 3.07342E-13 –
SUPERFAMILY
SSF52540
206 844 639 3.35E-56
IPR027417
CDD
cd18042
538 631 94 5.75996E-29 –
Pfam
PF13087
609 805 197 1.6E-58
IPR041679
Gene3D
G3DSA:3.40.50.300
630 842 213 4.9E-56 –
CDD
cd18808
632 823 192 8.60816E-55
IPR041679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0101200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…