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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0103800 |
| Transcript ID | LotjaGi1g1v0103800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16043674..16046759) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTGGTTTGTACAATCAAATTTCCTCACCTGCAACAGCAAGGGCCAGTTCACCAAATATAAACATCAGAAGCAATTT TAATGTTGATAGGTACATGGATAGAGGGGGTTGATTATTTTTCTGCTATTTATTATGAAAATTTTGATTTTTCAGTATCC TATATATATGGTTCCAGAACTTCAATTAACTCATGCTCTTTTTTATGTTTCCTATAGTCAGTACTTAGCAGAGCTGTTAG AAGAATACCAGAAACTAAGACCTTTCATGCAAGTCCTACCCTTATGTACCAGACTCTTAAATCAAGGTATGTTATTCTAA ATCTATATATTCAAGGTTTCCGTTGCTGAAAATTTCTTTATTGTTCTATTTGTTTAAACTGGTCTCAGTTTTTATTTCAC ATGAATTGGGTACTTGGGACTAGTATCTCATTTTTTTTCCTCTTAAGGATTATTATCTCCTTTAAAATGCTCAAAATTAC TAAGTTGTGATTTTCTCACTGGGTTGGAGTTTAGTAAGATTTCATTTCTGTTTACTAGTAAATGCATTACCATGTCATCA CTGATAATTGCTAAAGGAATTAGAAGTCTATATTTTAAATAAAATACAAGTGATTTTATTAGTCTTCTATATATGTGAGA AGAACAAATTTTTACATGATTATATAGAGTTCTTATCTGTTGATGAATTCATGAAAGAGAAACTCTGCTTTCGCTTCAAT CAAATTACCAAACTGTTTCTTTCACTGAAGATATTCTTATATTAAGTATCACCTTGTTATCAGAGATCTTAAGGGTTTCT GGGAAGAATGGATTGATTCAGAACCAAGGATTTAGTGATTATGACAGAGTGCAGTTTGGAAGCCACAATCCTAGTCTTTT GCCTTCTTTAGAGACAACAACAAATTTTACTGGTTGGAATAGCCTGTCACATAAAGTAAGTCTTTTTCTTCTTTTTTCAT CTTTTGTGTATGCTCTATACTTCTACTTAATGGACAATTCTCCACCACCCTCCAGTATCTAGCTCCTACCTTCTTGTTAC AAGGTTAATCTATAAACCATTCATGAATGGTTGAAAAAAACTATTTCTTAGCCCATTAAAAAATCCGGCACCGATACTAA GGGCATGTTTGGAAATCCTGCAATAATTGATTCTAAGCCAAAATCAATTTTGGAGAGAAGCTCATGTGAGTAGCTTCCGT ATGCCAGAATTGATTCTGGGAAAATCAAAGCTGGTCCAAACATCCTCTTCCTTTCTTTTTTTCATCAATTAACTCTTCCA CTGTAAATCCTTGAGTCATTTCATTTTCTAAGAGGTTAAGTCCAATCTTACATCAGAGGTTAGCTGGTGTACAGGGACTA AATGTGGATTGGCAAACAACACCTTCTGTGCCAAATTCTCCCATTGTGAAGAGGATCTTGCGCTTGGACATTCCTAGTGA TAGCTATCCAAATGTAAGACATGTAAACCATTTCAACACATTTTGATGTAACTTCACAAAGATTCATATCATGTTTCAAG TCACTAAGGCTAGCTTACATTTCAGTTCAATTTCGTTGGGAGGCTTCTTGGCCCTCGGGGTAATTCACTGAAGCGAGTCG AGGCTACCACAGGTTGCCGTGTATTTATTAGAGGGCAAGGTTCAATAAAAGACCCAGATAAGGTATCATCTCTTACTTTA TTTCTTTCAATTTGACAGAACCAAATTTAATGTCATACAACAACAATAACAGCATTTTTTCCACTAGAATATTATTTTGT GTCACATCTGTCACAATTTATCCTCCTTTTGATTTGTTGATATGCTGCATGTTTGGAAATCCTTATACAATTGATTCTGA AGACAGAATCAATCAATTCTGAGGAGAAGCTTCTGTGATGAGTAGCTTTTGAATTTCAGAATTGATTCTAGGGAAAGAGA AACGGATCTGATCCAAACAAACATACTAATTATCTTTCTTTTTTATCTTTCACAACAAATCTTGTTTGTTATTATAACTG TTAACTTATTCTCCCTTTTGTAATATAAAGGAAGAGGTTTTAAGGGGAAAGCCAGGCTATGAGCACCTGAATGAACCACT GCACGTTTTGATTGAGGCTGAACTACCTGTCAATGTTGTTGATATAAGGCTGAGGCAAGCACAAGAAATCATAGAAAATC TACTCAAACCCGTGGTATCTCTCTTTAACTCAGCTCAAAATATCACCTATAAGATTTTTTGTTTCTCTTTAGTCTTTACC CTTGAAGCATGGTCAAGGTGCTGTCAATTATATTGTTTTATCCTGTTATGGAAAGCTCCTACTTAGCACGTTTGGATCAA CTTGTTTTTTCCTCAGAATCAACTCTGCCACCTAGAAGCTACTCAGATTAGCTTCTTCCCATAATTGATTTTGGCTTTAA AACCAATTGTAGAATAATTTTCAACCATGCACTATACTTGGTATACTGACAATTGCAGTTAAAAAGAAATCTTTATCAGC AGATCTTACCTCCTTCCATTCCACTCTTCTTTTGTTTCTTAAACAATCAATCCACTGTTTAGTATTTACTTTCTTCAGCA TGCTAATAAATGAACGGTGAAAGCGAGCAACAGATAGAAAGTGAGTTTTCTCTTGAGCCAAATGATCCACATGGATCAAA ATCCTATGTCTCCAAATGGTGTCTCATTCTCTGTCTCACCAATGAAATTGTGTCATGCCATTTATACTCACACATGTAAG GTTATAAATATCATATACATGTATTTTTTAAGTGACAAGGCTTAAATTCATTAGTTAGGACAGGGGGTGAAACACCATTT CGGGACAGGGGATCTCGATCCGTTCGACTAGTACTTGCAAGTTGCATGTCACTTAGCAAAGCCAAAATGGCATTTAAGGA CTTAAGGTGAGTTGTTGTGTTGTGAAGTATTTCTGATTCTCCTCTATTTTCTTGTGCAGGATGAGACACAGGACTTCTAC AAGAGGCAACAACTGAGAGAACTTGCCATGCTGAATTCCAATTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTCTCTC TCCATTCACCTCTAATGAAATCAAAAGGGCGAAAACTGACCAATAG
CDS sequence (LotjaGi1g1v0103800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTTTGTACAATCAAATTTCCTCACCTGCAACAGCAAGGGCCAGTTCACCAAATATAAACATCAGAAGCAATTT TAATGTTGATAGTCAGTACTTAGCAGAGCTGTTAGAAGAATACCAGAAACTAAGACCTTTCATGCAAGTCCTACCCTTAT GTACCAGACTCTTAAATCAAGAGATCTTAAGGGTTTCTGGGAAGAATGGATTGATTCAGAACCAAGGATTTAGTGATTAT GACAGAGTGCAGTTTGGAAGCCACAATCCTAGTCTTTTGCCTTCTTTAGAGACAACAACAAATTTTACTGGTTGGAATAG CCTGTCACATAAAAGGTTAGCTGGTGTACAGGGACTAAATGTGGATTGGCAAACAACACCTTCTGTGCCAAATTCTCCCA TTGTGAAGAGGATCTTGCGCTTGGACATTCCTAGTGATAGCTATCCAAATGTAAGACATGTAAACCATTTCAACACATTT TGTACATTTCAGTTCAATTTCGTTGGGAGGCTTCTTGGCCCTCGGGGTAATTCACTGAAGCGAGTCGAGGCTACCACAGG TTGCCGTGTATTTATTAGAGGGCAAGGTTCAATAAAAGACCCAGATAAGGAAGAGGTTTTAAGGGGAAAGCCAGGCTATG AGCACCTGAATGAACCACTGCACGTTTTGATTGAGGCTGAACTACCTGTCAATGTTGTTGATATAAGGCTGAGGCAAGCA CAAGAAATCATAGAAAATCTACTCAAACCCGTGGATGAGACACAGGACTTCTACAAGAGGCAACAACTGAGAGAACTTGC CATGCTGAATTCCAATTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTCTCTCTCCATTCACCTCTAATGAAATCAAAA GGGCGAAAACTGACCAATAG
Protein sequence (LotjaGi1g1v0103800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGLYNQISSPATARASSPNINIRSNFNVDSQYLAELLEEYQKLRPFMQVLPLCTRLLNQEILRVSGKNGLIQNQGFSDY DRVQFGSHNPSLLPSLETTTNFTGWNSLSHKRLAGVQGLNVDWQTTPSVPNSPIVKRILRLDIPSDSYPNVRHVNHFNTF CTFQFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQA QEIIENLLKPVDETQDFYKRQQLRELAMLNSNFREESPQLSGSLSPFTSNEIKRAKTDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 4.1E-166 | – | |
| PANTHER | 1 | 298 | 298 | 4.1E-166 | – | |
| Pfam | 30 | 67 | 38 | 1.9E-9 | ||
| SMART | 135 | 249 | 115 | 4.2E-5 | ||
| CDD | 140 | 274 | 135 | 2.67952E-49 | – | |
| Gene3D | 158 | 281 | 124 | 2.2E-50 | ||
| SUPERFAMILY | 159 | 274 | 116 | 6.84E-29 | ||
| Pfam | 166 | 204 | 39 | 2.7E-5 | ||
| MobiDBLite | 275 | 299 | 25 | - | – | |
| MobiDBLite | 275 | 292 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0103800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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