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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0112600 |
| Transcript ID | LotjaGi1g1v0112600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exocyst complex component, putative; TAIR: AT5G58430.1 exocyst subunit exo70 family protein B1; Swiss-Prot: sp|Q9FGH9|E70B1_ARATH Exocyst complex component EXO70B1; TrEMBL-Plants: tr|G7JZR6|G7JZR6_MEDTR Exocyst subunit exo70 family protein; Found in the gene: LotjaGi1g1v0112600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17619283..17621678) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTCTTTTGAAAGATACAGGATGCTGTGAACATAGTCTAGAGCAAGGGATTGGTCTAGCACTACAACTGTAGGAGTA CGCCCGTCAATTTCAAGTTTTCAACCATATGATAATGTAATAGCTTTGGGCCCTTTTCGTTGAAATTTCTTTTGAAAACA GAAGAAGTTTCTCATCAAATCTAAAAAGTGGTTGTTGGCCTTTGTATATTTTCATGTGAAAACAATTCTTACTCAGTTCA AAGAGAACATGAGCAAGATGATGCAGCCAAAGATTTGGAGATTTGTAAGTTTTGCTTTTGCTGTTGTTGGACTGCTTTGT TACGCTCTGAGCTCTTCCTTCAACCATATATTTGGAAAATGGACTTTTGTTAAGATATTTCTTTATTGTGTTTTCAGCCT CATCATCTCCCTCATAATTTTGTTTGCAAAGAAATGGAAACACTGGAGAAGTCTCCTGTTCAAAGCTCACTTGGCATTTT TGGTTTTGACTATCACCTCTTTCTATTCCTTTATATCCGATAAAAATATGAATGCAAAACCAGATTTTTATAGCCTGATT TCATGTGCTGCCTTTGCTATCATGTCACTCAGTTTATCAAGGCAAACTCAGTGTGGATTTGAGGTTGATCTTATGTATTT CTTTCTGGGATTTCTAATGGTACAACTCATGAAGATTAAATTGTTGTTAGCTATTGTTGGAGTCGGGTTCAGCTATTCAC TTATTATTCTTCGTTCATCTTTTCCTTCTGGTCTTCCAGAATTTGACCAGTACCCTACAACTCAAGAAGAACCTTCTGTC ATCGTTTTAGTGGATTCACCACAACTTACTGATATTGCTAGTATCAAGCAGAAGCTCGCGGCTTGTTTAAAGGAGCTTCA ACAACACGATTTGAATCTGGGGAAATTGCTTTTGGAGCAGGTGAAGGAATACCATGAAGTTAAAACTGAACTGGTGGTCA CGGTCACAGAACACAACTTCATCATCCAAGAGCTGCCACATGCAACTATTAATGAATTTCAAGAACTTGGCAAGTTGATG CTGGATGCAGGGTTTGAGAAGGAGTTCTCTTCCGTGTGTTGCAGCTGGGGGCAGGAGTGGTTGCACAAGGTATTGGAGGA CATTCACAAAATTGAGGACAAAAAAGACGAGATTGGATTTGGAGGATGGGTTAAGGCTTCTAACATAGCTCTCAAGATAA TTTTCCCTAACGAGCTTAGATTCTGCGACAACATCTTCTTCGGTTTCTCCTTGGCGGCCGACCTCTCCTTCATGGAGGTT TGCAGGAGGCTGCTGAAATTTGACGATGGGATCGCCATTGGAAGCCGCTTATCAGAGCGGCTGTTTAGAGTCCTCGACGT GTTTGAGACATTGCGTGACTTGGTTCTCGAGTTGGAGTCTATGTTATGTGATCAGTACAATGTGTCGCTCGGGAATGAAG CTATCACAATTTGGAAGAAATTGGCAGAAGCAATTAGAGGGATTTTCATGGAGTTGGAGAGTCTGTTTCGCAAGGATCCG GCCAAAGCGGATATGCTCGGTGGTGAGCTTCATCCGATTACCCATTACGTGATGAACTACCTCCTTGCAGCATGTCGGTC ACGGCAGACACTGGAGCAGGTGTTTGAAGATTATGGAGTGCCTAAGCTTGATGATAAAGTGCCTTCATCTTCCTCTGTAT CAGTGCAGATGGATTGGATTATGGAGCTGTTGGAGAGCAATTTGGAAGCGAAATCCAAGATCTACAAGGATCCTGCTTTG TGCTATGTTTTCTTAATGAACAATAGCGGGTACATAGTTCAGAAGATCAAAGACAGTGGAATGGGAACCCTTTTGGGGGA TGATTGGATCCGGAAACACACTGCAAAAGCAAGGCAATACCATGTGTTATATCAAAGAAGCTCATGGAACAAGGTGCTGG GGTTTCTGAAGCCAGACAATGGATCAGTGCCACTTGGTGGAGTAGCCAAATCAATGAAAGAGAAGCTCAGGTCGTTTAAC ATGCTCTTTGAGGATATATGCAGAGTTCAGTCTTCTTGGTTTGTCTTTGATGAACAACTAAGGGAAGAAATAAGAATTTC CCTTGAAAATATCCTGTTACCTGCGTATAGGAACTTCATTGGGGGGTTTCAGAGTGTTCCAGAACTTGGTAAGCATGCTG ATAAATACATCAAGTATGGAACAGAGGATATTGAAGCAATGCTTAACAATTTGTTTCAGGGTAGCAGGGATCAACTGGTA GCCGAAAGTGAAGTTAAAGTTTCTTGTATGTGTATATAATTGTATGTTATAGTGTAATTCAAAGGCAGATTTTTTTTTGT TCATCGACAGAGGTAATTGTAAAAGATTTTGATCTAGTATTATAAATACCACCTTGATCAGTTTTCCTGCTCAACA
CDS sequence (LotjaGi1g1v0112600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGATGATGCAGCCAAAGATTTGGAGATTTGTAAGTTTTGCTTTTGCTGTTGTTGGACTGCTTTGTTACGCTCT GAGCTCTTCCTTCAACCATATATTTGGAAAATGGACTTTTGTTAAGATATTTCTTTATTGTGTTTTCAGCCTCATCATCT CCCTCATAATTTTGTTTGCAAAGAAATGGAAACACTGGAGAAGTCTCCTGTTCAAAGCTCACTTGGCATTTTTGGTTTTG ACTATCACCTCTTTCTATTCCTTTATATCCGATAAAAATATGAATGCAAAACCAGATTTTTATAGCCTGATTTCATGTGC TGCCTTTGCTATCATGTCACTCAGTTTATCAAGGCAAACTCAGTGTGGATTTGAGGTTGATCTTATGTATTTCTTTCTGG GATTTCTAATGGTACAACTCATGAAGATTAAATTGTTGTTAGCTATTGTTGGAGTCGGGTTCAGCTATTCACTTATTATT CTTCGTTCATCTTTTCCTTCTGGTCTTCCAGAATTTGACCAGTACCCTACAACTCAAGAAGAACCTTCTGTCATCGTTTT AGTGGATTCACCACAACTTACTGATATTGCTAGTATCAAGCAGAAGCTCGCGGCTTGTTTAAAGGAGCTTCAACAACACG ATTTGAATCTGGGGAAATTGCTTTTGGAGCAGGTGAAGGAATACCATGAAGTTAAAACTGAACTGGTGGTCACGGTCACA GAACACAACTTCATCATCCAAGAGCTGCCACATGCAACTATTAATGAATTTCAAGAACTTGGCAAGTTGATGCTGGATGC AGGGTTTGAGAAGGAGTTCTCTTCCGTGTGTTGCAGCTGGGGGCAGGAGTGGTTGCACAAGGTATTGGAGGACATTCACA AAATTGAGGACAAAAAAGACGAGATTGGATTTGGAGGATGGGTTAAGGCTTCTAACATAGCTCTCAAGATAATTTTCCCT AACGAGCTTAGATTCTGCGACAACATCTTCTTCGGTTTCTCCTTGGCGGCCGACCTCTCCTTCATGGAGGTTTGCAGGAG GCTGCTGAAATTTGACGATGGGATCGCCATTGGAAGCCGCTTATCAGAGCGGCTGTTTAGAGTCCTCGACGTGTTTGAGA CATTGCGTGACTTGGTTCTCGAGTTGGAGTCTATGTTATGTGATCAGTACAATGTGTCGCTCGGGAATGAAGCTATCACA ATTTGGAAGAAATTGGCAGAAGCAATTAGAGGGATTTTCATGGAGTTGGAGAGTCTGTTTCGCAAGGATCCGGCCAAAGC GGATATGCTCGGTGGTGAGCTTCATCCGATTACCCATTACGTGATGAACTACCTCCTTGCAGCATGTCGGTCACGGCAGA CACTGGAGCAGGTGTTTGAAGATTATGGAGTGCCTAAGCTTGATGATAAAGTGCCTTCATCTTCCTCTGTATCAGTGCAG ATGGATTGGATTATGGAGCTGTTGGAGAGCAATTTGGAAGCGAAATCCAAGATCTACAAGGATCCTGCTTTGTGCTATGT TTTCTTAATGAACAATAGCGGGTACATAGTTCAGAAGATCAAAGACAGTGGAATGGGAACCCTTTTGGGGGATGATTGGA TCCGGAAACACACTGCAAAAGCAAGGCAATACCATGTGTTATATCAAAGAAGCTCATGGAACAAGGTGCTGGGGTTTCTG AAGCCAGACAATGGATCAGTGCCACTTGGTGGAGTAGCCAAATCAATGAAAGAGAAGCTCAGGTCGTTTAACATGCTCTT TGAGGATATATGCAGAGTTCAGTCTTCTTGGTTTGTCTTTGATGAACAACTAAGGGAAGAAATAAGAATTTCCCTTGAAA ATATCCTGTTACCTGCGTATAGGAACTTCATTGGGGGGTTTCAGAGTGTTCCAGAACTTGGTAAGCATGCTGATAAATAC ATCAAGTATGGAACAGAGGATATTGAAGCAATGCTTAACAATTTGTTTCAGGGTAGCAGGGATCAACTGGTAGCCGAAAG TGAAGTTAAAGTTTCTTGTATGTGTATATAA
Protein sequence (LotjaGi1g1v0112600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKMMQPKIWRFVSFAFAVVGLLCYALSSSFNHIFGKWTFVKIFLYCVFSLIISLIILFAKKWKHWRSLLFKAHLAFLVL TITSFYSFISDKNMNAKPDFYSLISCAAFAIMSLSLSRQTQCGFEVDLMYFFLGFLMVQLMKIKLLLAIVGVGFSYSLII LRSSFPSGLPEFDQYPTTQEEPSVIVLVDSPQLTDIASIKQKLAACLKELQQHDLNLGKLLLEQVKEYHEVKTELVVTVT EHNFIIQELPHATINEFQELGKLMLDAGFEKEFSSVCCSWGQEWLHKVLEDIHKIEDKKDEIGFGGWVKASNIALKIIFP NELRFCDNIFFGFSLAADLSFMEVCRRLLKFDDGIAIGSRLSERLFRVLDVFETLRDLVLELESMLCDQYNVSLGNEAIT IWKKLAEAIRGIFMELESLFRKDPAKADMLGGELHPITHYVMNYLLAACRSRQTLEQVFEDYGVPKLDDKVPSSSSVSVQ MDWIMELLESNLEAKSKIYKDPALCYVFLMNNSGYIVQKIKDSGMGTLLGDDWIRKHTAKARQYHVLYQRSSWNKVLGFL KPDNGSVPLGGVAKSMKEKLRSFNMLFEDICRVQSSWFVFDEQLREEIRISLENILLPAYRNFIGGFQSVPELGKHADKY IKYGTEDIEAMLNNLFQGSRDQLVAESEVKVSCMCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 4 | 656 | 653 | 1.6E-209 | ||
| PANTHER | 4 | 656 | 653 | 1.6E-209 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 37 | 9 | - | – | |
| Phobius | 38 | 60 | 23 | - | – | |
| TMHMM | 38 | 60 | 23 | - | – | |
| Phobius | 61 | 68 | 8 | - | – | |
| Phobius | 69 | 88 | 20 | - | – | |
| TMHMM | 73 | 90 | 18 | - | – | |
| Phobius | 89 | 99 | 11 | - | – | |
| TMHMM | 100 | 117 | 18 | - | – | |
| Phobius | 100 | 116 | 17 | - | – | |
| Phobius | 117 | 127 | 11 | - | – | |
| Phobius | 128 | 156 | 29 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 157 | 676 | 520 | - | – | |
| Gene3D | 187 | 663 | 477 | 1.7E-129 | – | |
| SUPERFAMILY | 232 | 656 | 425 | 1.36E-102 | ||
| Pfam | 307 | 653 | 347 | 3.8E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exocyst | A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. | ||
| Biological process | Exocytosis | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. |
Expression pattern of LotjaGi1g1v0112600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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