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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0114300 |
| Transcript ID | LotjaGi1g1v0114300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | sorting nexin; TAIR: AT5G07120.1 sorting nexin 2B; Swiss-Prot: sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B; TrEMBL-Plants: tr|A0A0L9UWY0|A0A0L9UWY0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0114300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17982429..17990064) extracted from Lotus japonicus Gifu genome v1.2.
TCTCATTTCAAAAATAAAATAAAATAGTTCATTTAATTTTTGATCAGCAGTTGAATCCTAACAGATCACCCAATCTGAGT CCTTGCATGGTCTTCTTCAACCTCACCATCTCAAACCATTACACCTCGGCGCACGTTAGCCTCCGCCACCGACACCTGCC ACGAACACTGACACTCCAAACGCGATTTCCCCTTAACCTACACCCATTCCATTCCCTCACCACCACCACCAACCTCGCTG ATCGAACAAGCAACATCACCCTCACACTTCTCCACTTTCCCAATCCCAATCGATCGAAGAAATCATCAAACAATGATGGA CTCCGAGAATCATACCTCGGAGGAGCACCACCACCACCCTCTCTCCGCCGCCGCCGCGCCCAGAGAAGAAATGGAAAGCC TCGCCCTCCACGACGACGACGGCAACGGCGAGGTTTTGTCCAGCAGTAAATCCTACTCCAACTACCGCAGCGTCATGAGC ACTCTCTCCGAATCCCGACACCCTCTCTCGCCGCCGATCGTCTCCACTCCCGCCGAATCCGATCCCCTCCTATCTCCGCC GATGAATCACCACCACAACCGGGAATTCTCAAACCCTAACTCCCACGATACTTCCTCCTACCTCGACCCGCCATCCTACG CCGACGCTGTTTTCAGCCCCTTCGACGGAGAAACCGCCTCCAACTGTGTCGATAGCCCTACGAGCAGCTCTGATGGGCTT TCCCTCTCGAGATCCCCTTCTTCGAGCTCGGAGTATTTGAAAATAACCGTTTCGAATCCGGTGAAGGAGCAGGAGAATTC GAATTCGATTGTTCCCGGTGGGAGTAGTTACGTGACGTATTTGATCACGACGAGGACGAATGTTCTGGAGTTTGGCGGGT CTGAGTTCGCGGTGAGGAGAAGGTTTAGGGATATTGTGACGCTATCCGATCGGTTATCGGAGGCGTATAGAGGGTTTTTC ATTCCGCCGAGGCCGGATAAGAGCATTGTGGAGAGCCAGGTGATGCAGAAACAGGAGTTTGTGGAGCAGAGGAGGGTGGC GTTGGAGAAGTATCTTCGAAGATTGGCGGATCATCCGGTGATCAGGAAGAGTGATGAGTTCAGGGTGTTCCTGCAGGTTC AGGGGAGGATGCCGCTGCCATTGACGACGGACGTGGCATCGAGGGTTTTGGATGGTGCGGCGAAGCTTCCCAAGCAGTTG CTAGGGGAGAGTGTGATTGCCCCGCACGAGGTTGTGCAGCCTGCCAAAGGGGGAAGGGATTTGATGAGGTTGTTTAAGGA GTTGAAGCAGTCTATGGCTAATGACTGGGGAGGTTCCAAGCCACCGGTTGTGGAGGAAGACAAGGAGTTCCTGGAGAAGA AAGAAAGGATTCAGGAACTTGAACAGCAAATCAATGGTGCATCTCAGCAGGTGTTATTTTCTTGTGGTTTTATATTATCA GTGTCACTTTCAATTTCAGCTCATACATTGTGCATATATATACTTCTGTCTGTCTGCTTATGTGTCTGATACCTTGTCTC TTACATTCTTTTATTGAGTTTATGATGTGTGCTCACTGTCACTTTGAATTTGAGATCATCTTTGTAGTTTATATCCCTCT AGTCTTAGTTTATTTGGCTGTTTGGTTATTGTCTACTATAAATTTTCTCATAGTGTACCGATTTGATGCAGGCCGAATCA CTTGTCAAAGCACAGCAAGATATGGGAGAGACATTGGGTGAATTAGGGTTGGCATTTATTAAATTGACAAAATTTGAGAA TGAAGAGGCTGTCTTGAACTCGCAGAGGGTACGGGCTACTGACATGAAAGGTGTTGCAACCGCTGCTGTTAAAGCTAGCA GATTATATCGAGAATTAAATGCTCAGACTGTGAAGCATTTGGTATGTAGCAAATTTTTTGTAATATTAATTTTTTAAATA TGCATTCCTCATTTTCTATTTTAAGATATTCTTTCCAATATATATTTACCATAGGTTGGCAACTTGACATATATTCTTAC AAAGGTCTCACTCTTCCTTGATATAGGGAAATTCAGTAAATATGTTGACATTTTCCAATTTATGCATAGCAGGATACGCT TCATGAATATCTTGGATTAATGTTGGCAGTTCATAGTGCATTCTCGGATCGTTCTAGTGCACTGTTGACAGTGCAGACTC TTCTATCAGAACTGTCTTCTTTGCAGTCAAGAGCTGAAAAACTTGAAGCAGCATCATCTAAAATTTTTGGAGGTGACAAA TCGAGGATTCGTAAGTTAGAGGAGCTACAGGAAACCATAAGAGTCACTGAAGACGCCAAAAACATTGCAATTAGAGAATA CGAGCGGATCAAGGTTGGTTTAAGTGTTTTAAGAATTTTATTTCTCTGAGGCTAGTTTGTGACAGGGTCGTCAATGGCGG ATAGTGTAGTGTAGCGGCAAACCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGCGACAAATAGCAGTGAATA GTGGCGTAGCGGTGAACCCCTAGGGTGCTACGCTATAGGCTATTGCACCGCTATAGCGCGCTATTAACAAGACTGGTTTG TGATCAAAATACTAAATGATGCATTTCAATCTTCTATGATTTGGTTGATAGTGTTTATCCTTCTTGGGATCCATCAAATT TTTGTTTTTTTCCGATTTCTTGTTCTATATATATAGAATTAAATTTTTGACATTAATGTTGATTGAAATAGAGGTTCAAC TCTTTGCATTTGTAGACCTAAGTGTGTTTGTAAATTTGTAGATTGAGCTCCTCCTACATACATCCACATTGGTAACATTT CCCTAGTGTTAGATATTGCGGTCATTAGGCAATTAGTTTTTTTGTTTGTGGGTTTGGACTTGTATTAGTAGTATTGGCAG TTGTTATTAGTGTAAATAAAAGCATTTGGTTTGGCTGATAACGCATCACATCTATCAATCATACTCTCAGTTTACCACTA ATAGTTGACTTTCTCTCTTTTCTTGCTTCCCTTACCTTAAAACCTGATATTCTTAATATGGAATGAGAGATTCAGAGCAG TACCATTCATCTTCACGAGAGTCTCCTTTCTTTGGTATTGAGTTCACCACAATTGGTTACTTTCTCTCCTCTGTTCCCAA TTACTCTCTCCTCATTATTTAAATCAGAATCGGTTCTCACAGGGTTGCTGTCGTGACCCTCTTCTGCTGTGAATATAATT TTATTATTCTTAATGAAGGTTACTAGTCCTTCTATCTTCCTATACCTAAACCTTATAGTTTCAATGCGGTATCAGAGCCT CTATGACCAAATGGTCTTATATGGCACAGACCATTGACAAATTTTCTGTCAAACTCTAATGTTCATCTGTTTCTGTTTTG GTTTCTTTCCCTTAAATTCTGCTTGACTAGAGGTGATTTGAGAAACTACTGATTATGTTTCTGTCATGTTTTAATGGTTT TGAGATTTTCTACTAAGCAACTGTTTTTGGTTTGCCTTTCTTCCTTCTGTTATTACTGATTCTTTCAGATCTTTTGTGAC TTCTTCTGGTGCTTCTTTCTAGTTTGATTGTGGTTTTGATGTGACCTTCCCTCCTTTCTTCTCTTTTGTGCCAGTTCGTC CAAAACATTATCTAATGTAAATTTTTGCTTGTCTTCTAATGTGTGCTGTTTCAAATTCATAGAACTGGTTTTCCTCCTCC ACAAAGTTCCTTTTCTCATCTTGGTCATGACTTGGGATGTGCTTTGTTTGGTGGCTGAATTATTATTCTGCCTCTGGTAG GCATGTTTTTTTGTTCTTCTGTTTTTGTTCAGTGTGTCTGATGTAGGGGACACTTGAGGTGGTCCGGTAAAAAAACAGTC CACTGGCGAATCCTTCAAAAATAACAATCAGATAATTGTTAAAAAGATTGAATGGTCCAGATGAGTGGTGAAAGTTTTGA CTATGGTTTTCTGATATTTGCACTTTTGCTGACAAATCTCAAGATCTTTGACCTCCCTCTCTGCTGCTGATAGAATCTCA AATTCTCATTTGGATTCTCTTGGTTAGAATTAACATTATGGTTATTTTCTTGCTGTTGTTCTCCCTGGCCCCATCACTCT AACTGGACCCTTTACTCTTAACAACATCACAACTGTTGGTATGGTCCTCAAAGTTTCTAAATAAATCTCAGCTTGTACCC CACTTTAAAAATTGAAAAGCTCAGCTTGTATCCCTTTTACATCACAAAGATGTCAAAAACAGCTATCTCTGGATGAAGAA CAGCTAAAACCACACCACAGTTGGAGCTAAAACCATTACCATTGAAGGAGGAGAAGAAGAAGACAAGACAGGAGAAGATG GGTAATGGCACTATTTGATGTATGTTCCATGTTCCATATTTCCATGTCCTGTTTGGCATTGAATTGAGGCTATTGGTGTA ATTTTTTGTGGTCAAGCTTGTCAAGGGTTTTGTTTGAGCTTGAAGACTTTGGACGCTAGTAAAGGACCCCCACTCAGTGG TTGGAGATTCTATTGGAAGTGGGAGGCATGATACATCGAATTTGGGGATCAGCTTGGAGGCAGTGTTGTTAGTGGCGGAT GGCGGAGAGCCAAAAACCCACCATGGCTGATAATTTATAACACTGCTTGGAGGTCGAGTCTACCCACTGAGTCAATTGGT GTCTAACTTCTAAGACTCTAGAAACTTTCTCATCTGCTTGGGATTTGTGATGAGAAGATATTGCCGTGTTATGTGATTCA GGGGGAGTATGAGTTGCATAAGTTCTTTGCTAGATGGGCTAGTGTTTTGTGTCGCTTAAGTTTTTGTTTTTGTTTGGGAG GGAGGGGGTGGCTGTCTTGAGATATTACAGTTATTAGTCTTATACGCTTGTTAGTAGACAGTTGTAGTTCTCGTACTTGT CCTACTTATTAGTATAAAAAGGACTTGTAGAGTATAGGGTTTAGACCCCTTAGGTTTAAATAGAGTTCAGGCAATTCAGC ATAAAAAATTATATTGATATTAATGTGAATGATATGTTGAATGGTATACATCAATTAAAGCACTGATCTTTAATTTGTAC TAATATTAGACTCCTAATTTTAATAAAGTAATGAAACAAGTCTTACTATATAGTAAATATGAAAACAAATCCTAGTGGAT AATCTTAGATAATCTTAACTTACTCTGTATTATAAGATATACTTCTTACATTCTAACATCTATCAATCATATTTTGGATT TATTATTTAGCTGCCTTCCTTTATTTTTCCTTCTCCTAACCCTGATCCTGAAATTCTTAACACTAAGCATATGTGGCCAT TATCAAGTTGATCCCTGCTGTTTATTCTAAATCATCAATTAGAATCCCTGTTATTTTGAATCACAGCAAATACCCCATTT AATAAGCTGGCAATGTGATATGATTTAGGTGATCTATAATCTAATGTTCTGTTTGCAGCATTGCTTTGTATATGGTTGTT ATATTGTGAAGGATACATACAAATGATTAGGAACTTATTATATAGCGTACGGTCAGAAACAGTACTTTGTATAGGGTGAT GTCTACTCTCTCTTTTCTTTTACTTCCATGTTATCAAACATCTGTTAGGGTGATGTCTACTCTCTCTTTTCTTTTATCTG GCTGGGCCTTTCCAGAAGCATCTTTTTTATTATTATTGTTTGAATTTAACATGCTATGTCTGGCCTTTCAACTGGATGTT ATCTCTCTTTTCTCATATCTGCATTTCTATGTCCAATCCTAAAATATCTCTTTGAATGTTCGCATACATTGATTTGCGTG TCTATTTTCATTGTAAGATTTTCTTGTTTCATCTGGTATTTCCTTTCTGCATTATACTTATATTTTAAGTTTACCTTTTG TGTAACTGGATATTGAATGACTATCATGCCAATGCAGGAAAACAATAGGAGTGAACTTGAAAGACTGGATAGCGAGAGGC AGGCTGACTTCTTAAACATGTTGAAAGGATTCGTAGTTAATCAGGTATGGTCTATGTCTGTTCTTTTTAAGTGCCTCCTT AAGTAGAATTAGCTTTGAGGTGATTATTGTTGACATGTATAACCCCTCGTCATGTTAGTGAAGGAATCTCATAATTGATA AATCGCTCAAGTGTCTGAACATGTTCATTTAGTGTGTAACTAATTGCTGTTTGATCATGTTAGATGATGACTTACGTTTT AGGGAACTTTATACTTACATTGTTAAAGAATATGGTGAAAGACAAACTAAGAACAAGTAGTCGACTTGTTAGAGTTTAAA GTTTCATGAGGTGAAGACAAAATAAGATGATTTCTTTTGTATCATGAAAACTTACTGGAGGATGTACTGAAAAAAGAAGA AAAAAATAAAGGAAAGCTGCTAGAGTAATGTGAATATAATATATTGTATTTTGTTCTATGTATATTGTCTGACTGAAGCA CTAAAGTATGTTTGGGAAACTCAGCCTCCCGTTTTCTCCAATTATGATGCTAAAATCATATGAGAATCACACTTTTCAAT AAAAAAACGTGAAAGGAGCTCAATGGCTCCATTGGATAAAATGTAGTAGTACTTTTTGTAACTAATACAAGCACACTCTA AGCACCTCAAAGAATGAAATTGAGTATTTAAAGTGGAACTAGCTGTGCTAGCTGGTTCCTTCAATCTTTGATGAAAAGAA AGATAGTGGAGAACCTGGCTGGTGGTTCTTTTTGTTACCTGTGAACATAATTCTATTGCGAATGATATTCAAAAGTCATA CGGCGACAGTATCATCTTTAACTGTTGAGTGAGTGAGTCTTGTGCATGGAGCTTATGGAAGTTTGGTCTTGTTTTGCCTT GTTGCAAGCATTTTATATAATTGTGCATGTTGAGTTTGAAGCGGTGTCTCGTAGAAATTGCAATGTTGCATAGAATACTC TCTTCTGCAGTGGGTCATAGGTGCACCATTAATGAAATAGATCGACATAGTTTAGATTTCCTAAAAAAATGTTAGAATTG TGCAAGATTGCTTATTTTTTTTTTCTTTCAAAGAGATGCTTAAGAAGCCAGAGAATACAAGGCTCCAGTGTTCTACTAAT CCATGCCTTATAAGAATAGTTGGAGAACGACTTAAATGCTTTTGTAAGCGGTTCTATTATAATCTTATGGCTAAATTATG AGAACTAAAATGCTGTATATTTCAGTCAATCTTTGTTTAGTTATCATCATGTCGCTTCTTTTGTTGTTTGATGCTCTCTT TCGTTGCATTCATCTTCTGATTTGTATCCGTGTTACTAAGTCTCTCTGTGAAATGATAGGTGGGGTATGCTGAGAAAATA GCTAATGTCTGGACAAAAGTTGCTGAAGAGACACGAAAATATGTGAATGAAAGCACTTAAGCTCTGGCTATTAATTTGAT TTTCATCCTTATTCATTGATGTAGCATTATGTAGTCATGACAATAAACATAATGAAGCACTTTGGGGGCTTTTTCTCACT TGTATCACAAAGAACATTTCTTACACATCATTCCAAGGATACTTGGTGTTGTACATTACTTGCTATAAGTTTGGCTCCTG CAGCTTTTCCGAGGTTTTTGTTTACCACTATTTGTTTATATTTTCTTTTCCGATAGTCTAAAGCAGTCACTCACTAAATT TTGTAAGCATACTGTACTGTCTGTACATGAATCATT
CDS sequence (LotjaGi1g1v0114300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGACTCCGAGAATCATACCTCGGAGGAGCACCACCACCACCCTCTCTCCGCCGCCGCCGCGCCCAGAGAAGAAAT GGAAAGCCTCGCCCTCCACGACGACGACGGCAACGGCGAGGTTTTGTCCAGCAGTAAATCCTACTCCAACTACCGCAGCG TCATGAGCACTCTCTCCGAATCCCGACACCCTCTCTCGCCGCCGATCGTCTCCACTCCCGCCGAATCCGATCCCCTCCTA TCTCCGCCGATGAATCACCACCACAACCGGGAATTCTCAAACCCTAACTCCCACGATACTTCCTCCTACCTCGACCCGCC ATCCTACGCCGACGCTGTTTTCAGCCCCTTCGACGGAGAAACCGCCTCCAACTGTGTCGATAGCCCTACGAGCAGCTCTG ATGGGCTTTCCCTCTCGAGATCCCCTTCTTCGAGCTCGGAGTATTTGAAAATAACCGTTTCGAATCCGGTGAAGGAGCAG GAGAATTCGAATTCGATTGTTCCCGGTGGGAGTAGTTACGTGACGTATTTGATCACGACGAGGACGAATGTTCTGGAGTT TGGCGGGTCTGAGTTCGCGGTGAGGAGAAGGTTTAGGGATATTGTGACGCTATCCGATCGGTTATCGGAGGCGTATAGAG GGTTTTTCATTCCGCCGAGGCCGGATAAGAGCATTGTGGAGAGCCAGGTGATGCAGAAACAGGAGTTTGTGGAGCAGAGG AGGGTGGCGTTGGAGAAGTATCTTCGAAGATTGGCGGATCATCCGGTGATCAGGAAGAGTGATGAGTTCAGGGTGTTCCT GCAGGTTCAGGGGAGGATGCCGCTGCCATTGACGACGGACGTGGCATCGAGGGTTTTGGATGGTGCGGCGAAGCTTCCCA AGCAGTTGCTAGGGGAGAGTGTGATTGCCCCGCACGAGGTTGTGCAGCCTGCCAAAGGGGGAAGGGATTTGATGAGGTTG TTTAAGGAGTTGAAGCAGTCTATGGCTAATGACTGGGGAGGTTCCAAGCCACCGGTTGTGGAGGAAGACAAGGAGTTCCT GGAGAAGAAAGAAAGGATTCAGGAACTTGAACAGCAAATCAATGGTGCATCTCAGCAGGCCGAATCACTTGTCAAAGCAC AGCAAGATATGGGAGAGACATTGGGTGAATTAGGGTTGGCATTTATTAAATTGACAAAATTTGAGAATGAAGAGGCTGTC TTGAACTCGCAGAGGGTACGGGCTACTGACATGAAAGGTGTTGCAACCGCTGCTGTTAAAGCTAGCAGATTATATCGAGA ATTAAATGCTCAGACTGTGAAGCATTTGCAGGATACGCTTCATGAATATCTTGGATTAATGTTGGCAGTTCATAGTGCAT TCTCGGATCGTTCTAGTGCACTGTTGACAGTGCAGACTCTTCTATCAGAACTGTCTTCTTTGCAGTCAAGAGCTGAAAAA CTTGAAGCAGCATCATCTAAAATTTTTGGAGGTGACAAATCGAGGATTCGTAAGTTAGAGGAGCTACAGGAAACCATAAG AGTCACTGAAGACGCCAAAAACATTGCAATTAGAGAATACGAGCGGATCAAGGAAAACAATAGGAGTGAACTTGAAAGAC TGGATAGCGAGAGGCAGGCTGACTTCTTAAACATGTTGAAAGGATTCGTAGTTAATCAGGTGGGGTATGCTGAGAAAATA GCTAATGTCTGGACAAAAGTTGCTGAAGAGACACGAAAATATGTGAATGAAAGCACTTAA
Protein sequence (LotjaGi1g1v0114300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDSENHTSEEHHHHPLSAAAAPREEMESLALHDDDGNGEVLSSSKSYSNYRSVMSTLSESRHPLSPPIVSTPAESDPLL SPPMNHHHNREFSNPNSHDTSSYLDPPSYADAVFSPFDGETASNCVDSPTSSSDGLSLSRSPSSSSEYLKITVSNPVKEQ ENSNSIVPGGSSYVTYLITTRTNVLEFGGSEFAVRRRFRDIVTLSDRLSEAYRGFFIPPRPDKSIVESQVMQKQEFVEQR RVALEKYLRRLADHPVIRKSDEFRVFLQVQGRMPLPLTTDVASRVLDGAAKLPKQLLGESVIAPHEVVQPAKGGRDLMRL FKELKQSMANDWGGSKPPVVEEDKEFLEKKERIQELEQQINGASQQAESLVKAQQDMGETLGELGLAFIKLTKFENEEAV LNSQRVRATDMKGVATAAVKASRLYRELNAQTVKHLQDTLHEYLGLMLAVHSAFSDRSSALLTVQTLLSELSSLQSRAEK LEAASSKIFGGDKSRIRKLEELQETIRVTEDAKNIAIREYERIKENNRSELERLDSERQADFLNMLKGFVVNQVGYAEKI ANVWTKVAEETRKYVNEST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 1 | 578 | 578 | 6.3E-281 | – | |
| PANTHER | 1 | 578 | 578 | 6.3E-281 | – | |
| MobiDBLite | 1 | 35 | 35 | - | – | |
| MobiDBLite | 59 | 105 | 47 | - | – | |
| MobiDBLite | 87 | 104 | 18 | - | – | |
| MobiDBLite | 124 | 143 | 20 | - | – | |
| Gene3D | 141 | 278 | 138 | 7.6E-35 | ||
| SUPERFAMILY | 145 | 270 | 126 | 2.62E-28 | ||
| CDD | 150 | 270 | 121 | 8.62057E-63 | – | |
| ProSiteProfiles | 154 | 273 | 120 | 16.998 | ||
| SMART | 155 | 270 | 116 | 4.7E-19 | ||
| Pfam | 163 | 269 | 107 | 4.6E-22 | ||
| Pfam | 336 | 569 | 234 | 4.8E-21 | ||
| Gene3D | 337 | 573 | 237 | 1.6E-52 | ||
| Coils | 339 | 373 | 35 | - | – | |
| CDD | 341 | 570 | 230 | 4.08601E-57 | – | |
| SUPERFAMILY | 342 | 570 | 229 | 4.97E-7 | ||
| Coils | 464 | 484 | 21 | - | – | |
| Coils | 499 | 540 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol binding | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
Expression pattern of LotjaGi1g1v0114300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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