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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0119500 |
| Transcript ID | LotjaGi1g1v0119500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720; TrEMBL-Plants: tr|A0A0B2S484|A0A0B2S484_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi1g1v0119500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18856118..18858834) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACTCATTGACCTCTCTGAGTTTGTGGCAATTGATCTGACAAGTCATCCTTATGGGACCCCCAAAAGGTCTAGAGA CCCAGAATTGGATGCCCCTAATCTCCATCACCAACACCACCTTATCAGCTCAATCCTCATTTCCACCCATCTCTGCAAGC AAAACACAGAGCAGACTAGGGAGCTTCAAGAACCAGTGGAAAAGGAGTAAAAGTAAGGGACCAAAAAACCCATAATGGAA AAATGCCTCATTATCTTACCCACTAAATCAAGACCTCCTCTTTCAATCCCATCTTACAGTGCCTCCCAATTTGAGTTTAT TGCCTCAACAAGAGTCCATGCAAACTCCAACTATGTATCTATGTCCATAAGGTCACTTCCATACCCAAAATTCATGGATG CCCAGTTGAACCAGTTATGCAGTAATGGCCCCCTGAGTGATGCTGTGGCAATTCTTGACTCCCTGGCTGAACAAGGCTCC AAGGTGAGACCCATCACCTATATGAACTTGCTACAGTCTTGTATTGACAGGGACTGTATTGAGGTGGGTAGAGAGTTGCA TGCTCGGATTGGATTGGTGGGAAATGTGAATCCTTTTGTGGAGACCAAGCTGGTGAGCATGTATTCAAAATGTGGGCATT TGAGTGAGGCACGCAAAGTGTTTGATGAAATGCGTGAGAGGAATTTGTTCACTTGGTCTGCTATGATTGGTGCCTGCTCC AGGGAGAAGAGTTGGGAGGAGGTTGTGGACCTCTTTTATGACATGGTGCGGCATGGTTTCTTGCCTGATGAGTTTTTGCT TCCGAAGATCTTGCAAGCGTGCGGGAAGTGCGGGGATTTGGAGACCGGGAGGTTGATTCATTCGGTGGCGATTCGGCATG GGATGTGCTCTTCCATTCGGGTGAATAATTCAATTATGGCTGTGTATGCTAAGTGTGGGGAGATGGGTTTTGCAAAGAAG CTTTTTAAGAGTATGGATGAGAGAGACAGTGTGACCTGGAATGCAATAATAACTGGATTTTGCCAGAATGGTGATATTGA ACAAGCTCGGAAATACTTTGATGCAATGCAGGAAGAAGGAGTTGAACCTGGTTTGGTGACTTGGAACATTTTGATTGCTA GTTATAATCAGTTAGGGCGTTGTGATATCGCAATGGATTTAATGAGGAAGATGGAGAGTTTTGGGTTAACTCCAGATGTA TATACTTGGTCTTCTATGATTTCTGGGTTTACTCAAAAGGGTAGGACATATCATGCTTTAGATTTGTTGAGAAAGATGTT ATTATCAGGGGTTGAGCCTAACAGCATTACAGTTGCAAGTGCAGCCTCGGCATGTGCGTCCTTACAATCACTAAGTATGG CTTTAGAAATCCATGGTATTGGTGTTAAGATGAGTTTGGTTGATGATGTGCTAACTGGTAATTCACTGATTGACATGTAT TCCAAGTGCGGGGATCTAGAAGCTGCTCAACGCATTTTTGATATGATGTATGAGAGAGATGTATATTCTTGGAATACAAT TATCGGAGGATATTGCCATGCTGGTTTCTGCGGCAAAGCTTATGAGTTATTTATGAAAATGCAGGACTCTGATTCACCAC CTAATGTAGTTACATGGAATGCATTGATTACAGGATATATGCAGAGTGGTGCTGAGGATCAGGCGTTGGATCTTTTTAAA AGGATTGAGAAAGATGGAAAAATTAAGCGAAACGTAGCATCATGGAATTCATTAATTGCTGGTTTCCTGCAAAGTGGACA AAAGGACAAGGCTATGCAGATATTTCGGCGTATGCAGTTTTTCCAGATAGCTCCTAACTCAGTCACAGTGCTAAGTATCC TTCCTGCCTTTGCAAATTTAGTGGCTGGGAAAAAAGTGAAAGAAATCCATTGTTGTGCCCTACGTAGAAATTTAGTGTCT GAAATTTCAGTGTCAAATATATTAGTTGGAACATTATGCTAAGTCAGGAAATTTGATGTATTCCAGACGTATTTTTGATG GATTGCCATTGAAAGATATCATCAGTTGGAACATTATGCTTTCTGGTTATGTTCTACATGGCAGTTCAGAGTCTGCACTT GATCTATTTTATCAGATGAGGAAGGAAGGGCTTCAACCAACTAGAGGTACTTTTGCAAGCATCATCTTAGCTTATAGTCA TGCTGGAATGGTGGATGAGGGGACGCGAATTTTCTCAAGCATTACTGAAGAATACCAGATTAGACCAGGTTTGGAGCATT ATTCTGCTACGGTCTATTTGCTTGGTCGTTCAGGTAAGCTTGCTGAAGCACTGGAGTTTATTCAAAACATGCCTGTTTCA CCGAATTTCTCTGTTTGGCACACCTTGCTGACCGCCTGCAGAGTTCATAGAAATTTTAGACTGGCAATCCTGGCAGCAGA ACTAGCATTGGAGATGCTCTTAGCAATATTCATGTTGGCCCGTAATGCCACATGTGTTTAAGCAACTCTTTGCAGATTTT GCTTCAACCATGAGTTCTTAGTTTTTAGTTTTTTAGCACTATTTATCCGGTCCCACAATACCATTATATTAATATTTTTT ATTTAAATTTAAATTTTAATTCAATACCTAAATTAAATGAATGAGAGAGAAAAAATTAAATTTTTATGCTAAAAACTCAA AAAGTAAAACTTTTTATATAAGAACCTAGTTCTTATTTTCAAGAACTAAGAACTTCATGTCATCCCCTCAAGTGGTT
CDS sequence (LotjaGi1g1v0119500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAATGCCTCATTATCTTACCCACTAAATCAAGACCTCCTCTTTCAATCCCATCTTACAGTGCCTCCCAATTTGA GTTTATTGCCTCAACAAGAGTCCATGCAAACTCCAACTATGTATCTATGTCCATAAGGTCACTTCCATACCCAAAATTCA TGGATGCCCAGTTGAACCAGTTATGCAGTAATGGCCCCCTGAGTGATGCTGTGGCAATTCTTGACTCCCTGGCTGAACAA GGCTCCAAGGTGAGACCCATCACCTATATGAACTTGCTACAGTCTTGTATTGACAGGGACTGTATTGAGGTGGGTAGAGA GTTGCATGCTCGGATTGGATTGGTGGGAAATGTGAATCCTTTTGTGGAGACCAAGCTGGTGAGCATGTATTCAAAATGTG GGCATTTGAGTGAGGCACGCAAAGTGTTTGATGAAATGCGTGAGAGGAATTTGTTCACTTGGTCTGCTATGATTGGTGCC TGCTCCAGGGAGAAGAGTTGGGAGGAGGTTGTGGACCTCTTTTATGACATGGTGCGGCATGGTTTCTTGCCTGATGAGTT TTTGCTTCCGAAGATCTTGCAAGCGTGCGGGAAGTGCGGGGATTTGGAGACCGGGAGGTTGATTCATTCGGTGGCGATTC GGCATGGGATGTGCTCTTCCATTCGGGTGAATAATTCAATTATGGCTGTGTATGCTAAGTGTGGGGAGATGGGTTTTGCA AAGAAGCTTTTTAAGAGTATGGATGAGAGAGACAGTGTGACCTGGAATGCAATAATAACTGGATTTTGCCAGAATGGTGA TATTGAACAAGCTCGGAAATACTTTGATGCAATGCAGGAAGAAGGAGTTGAACCTGGTTTGGTGACTTGGAACATTTTGA TTGCTAGTTATAATCAGTTAGGGCGTTGTGATATCGCAATGGATTTAATGAGGAAGATGGAGAGTTTTGGGTTAACTCCA GATGTATATACTTGGTCTTCTATGATTTCTGGGTTTACTCAAAAGGGTAGGACATATCATGCTTTAGATTTGTTGAGAAA GATGTTATTATCAGGGGTTGAGCCTAACAGCATTACAGTTGCAAGTGCAGCCTCGGCATGTGCGTCCTTACAATCACTAA GTATGGCTTTAGAAATCCATGGTATTGGTGTTAAGATGAGTTTGGTTGATGATGTGCTAACTGGTAATTCACTGATTGAC ATGTATTCCAAGTGCGGGGATCTAGAAGCTGCTCAACGCATTTTTGATATGATGTATGAGAGAGATGTATATTCTTGGAA TACAATTATCGGAGGATATTGCCATGCTGGTTTCTGCGGCAAAGCTTATGAGTTATTTATGAAAATGCAGGACTCTGATT CACCACCTAATGTAGTTACATGGAATGCATTGATTACAGGATATATGCAGAGTGGTGCTGAGGATCAGGCGTTGGATCTT TTTAAAAGGATTGAGAAAGATGGAAAAATTAAGCGAAACGTAGCATCATGGAATTCATTAATTGCTGGTTTCCTGCAAAG TGGACAAAAGGACAAGGCTATGCAGATATTTCGGCGTATGCAGTTTTTCCAGATAGCTCCTAACTCAGTCACAGTGCTAA GTATCCTTCCTGCCTTTGCAAATTTAGTGGCTGGGAAAAAAGTGAAAGAAATCCATTGTTGTGCCCTACGTAGAAATTTA GTGTCTGAAATTTCAGTGTCAAATATATTAGTTGGAACATTATGCTAA
Protein sequence (LotjaGi1g1v0119500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKCLIILPTKSRPPLSIPSYSASQFEFIASTRVHANSNYVSMSIRSLPYPKFMDAQLNQLCSNGPLSDAVAILDSLAEQ GSKVRPITYMNLLQSCIDRDCIEVGRELHARIGLVGNVNPFVETKLVSMYSKCGHLSEARKVFDEMRERNLFTWSAMIGA CSREKSWEEVVDLFYDMVRHGFLPDEFLLPKILQACGKCGDLETGRLIHSVAIRHGMCSSIRVNNSIMAVYAKCGEMGFA KKLFKSMDERDSVTWNAIITGFCQNGDIEQARKYFDAMQEEGVEPGLVTWNILIASYNQLGRCDIAMDLMRKMESFGLTP DVYTWSSMISGFTQKGRTYHALDLLRKMLLSGVEPNSITVASAASACASLQSLSMALEIHGIGVKMSLVDDVLTGNSLID MYSKCGDLEAAQRIFDMMYERDVYSWNTIIGGYCHAGFCGKAYELFMKMQDSDSPPNVVTWNALITGYMQSGAEDQALDL FKRIEKDGKIKRNVASWNSLIAGFLQSGQKDKAMQIFRRMQFFQIAPNSVTVLSILPAFANLVAGKKVKEIHCCALRRNL VSEISVSNILVGTLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 50 | 84 | 35 | 5.536 | ||
| Gene3D | 53 | 207 | 155 | 1.0E-29 | ||
| PANTHER | 73 | 211 | 139 | 2.0E-82 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 9.46 | ||
| SUPERFAMILY | 125 | 277 | 153 | 6.96E-5 | ||
| TIGRFAM | 125 | 150 | 26 | 1.1E-4 | ||
| Pfam | 126 | 150 | 25 | 3.9E-5 | ||
| ProSiteProfiles | 150 | 184 | 35 | 12.211 | ||
| TIGRFAM | 152 | 186 | 35 | 9.7E-9 | ||
| Pfam | 152 | 182 | 31 | 6.0E-7 | ||
| ProSiteProfiles | 185 | 219 | 35 | 6.401 | ||
| Gene3D | 208 | 314 | 107 | 1.4E-25 | ||
| PANTHER | 215 | 322 | 108 | 2.0E-82 | – | |
| ProSiteProfiles | 220 | 250 | 31 | 7.399 | ||
| Pfam | 225 | 250 | 26 | 0.0062 | ||
| Pfam | 251 | 285 | 35 | 6.2E-11 | ||
| ProSiteProfiles | 251 | 285 | 35 | 14.316 | ||
| TIGRFAM | 253 | 285 | 33 | 2.9E-10 | ||
| SUPERFAMILY | 262 | 519 | 258 | 5.75E-8 | – | |
| ProSiteProfiles | 286 | 320 | 35 | 11.126 | ||
| Pfam | 288 | 318 | 31 | 3.9E-6 | ||
| TIGRFAM | 288 | 322 | 35 | 2.7E-6 | ||
| Gene3D | 315 | 379 | 65 | 5.1E-10 | ||
| Pfam | 320 | 367 | 48 | 2.1E-8 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.222 | ||
| PANTHER | 322 | 371 | 50 | 2.0E-82 | – | |
| TIGRFAM | 323 | 356 | 34 | 3.4E-7 | ||
| PANTHER | 377 | 460 | 84 | 2.0E-82 | – | |
| Gene3D | 380 | 471 | 92 | 4.3E-25 | ||
| ProSiteProfiles | 391 | 421 | 31 | 9.624 | ||
| TIGRFAM | 396 | 423 | 28 | 0.0016 | ||
| ProSiteProfiles | 422 | 456 | 35 | 11.816 | ||
| Pfam | 422 | 458 | 37 | 2.7E-8 | ||
| TIGRFAM | 424 | 458 | 35 | 4.7E-7 | ||
| ProSiteProfiles | 457 | 491 | 35 | 10.665 | ||
| TIGRFAM | 459 | 488 | 30 | 9.9E-4 | ||
| Pfam | 459 | 488 | 30 | 7.0E-6 | ||
| Gene3D | 472 | 575 | 104 | 7.7E-15 | ||
| Pfam | 493 | 540 | 48 | 1.2E-9 | ||
| ProSiteProfiles | 493 | 527 | 35 | 11.542 | ||
| PANTHER | 494 | 543 | 50 | 2.0E-82 | – | |
| TIGRFAM | 496 | 528 | 33 | 1.1E-5 | ||
| TMHMM | 522 | 544 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0119500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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