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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0125300 |
| Transcript ID | LotjaGi1g1v0125300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT2G04240.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SI09|XERIC_ARATH Probable E3 ubiquitin-protein ligase XERICO; TrEMBL-Plants: tr|C6SVI3|C6SVI3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0125300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19785886..19788215) extracted from Lotus japonicus Gifu genome v1.2.
CGCGTAGATTCACTACAAATATGGAAACATGTCAAGAAAGTACCAAATGTTTAACCATGGTTAAAGAGCACAATTCCAAT AAAGCGGTAGCAACTAACCATGGTTAGTGGAGTGGAGAGTTGTTGCCAATAATGAATCCCGTTCCTCTATTATAAAGCAG AGAGAGAGAAGAGAATACACATTTTCCATCATTCCAGAACCGTAATCTTCAAACCCCACTTCGTAAGTTTCATCAAAATG CAATCTTTTTCTTCTGGGGTTTCATTTTTCATCTCTGAGTAATCTAACAAATGTTTTTTCTGAAGAAAAATGTTAGATCC TGAATTAGTATAGTGCTCAGTTTACATGTAAAGTTTAGATTTTCTTTTTCCTTTCTCTTATGTTGTTCTGATCAAAATTA TGTACCATGTTGTTTTGTTTTGTATTAGATCTTGTTTCAGCTGTTTTTGTTAGCTTCCTCAATTTGCAATCTGGAATTTT GGCATGAAATTACCTGCTACTTTGATGTTAACTTTGTTGTTGTTCTTGTTGTTGTCTGTATATTGGTTTGATTTGTCTTC TAATTGTGGCTTCTGGGTTTACCCTAATTTTCTGAGTAGCTGTTCTTTAACTAGAATAAAGAGACAATTATATATCAATC CAAAATTTCTCTATCTTGAAAATTGTTATGTCATTCACTTTCTTAAGGAACTTTTTTTTTGGGTATGCATAACTTGTGAA ATCAAATGTTATAGTAGCTATATAGTCATGAGTTAAGCTAAGTCTGTTTGTTTTTGCAATTCATGATTGATAATTCAATA TGTTATTTAGTCTATTTAGTTTATTTGGGTATTCAGAGTACTAATCTTTCCTTTAATGTGTATACAGGTAAGATACTAAG AAGAGACTAACAGAGTTTCCAATACTTTGTTCTTCCTCTCTGATTGATCAAGCATAGCATCTCTGCTTTTTGTGTCTCTA TTTCCATGATTTTCAGTGCTGCTTGAATCAAAGGCAATTTGTTGTTCATTTTTTAGCTTCAACAGGTGCCAAACAATTTA TATCAGTAATTTGGCATCCTTAAAGGATCCTCACCATTGACCAAAATGGGTCTCTCAAGTCTCCCAGCACCATCTGAAGG AGTGTTATGTGTGCTTCTTGTGAACACTGTGATGTCCATTTCCATATTCAAAGGCATTGTCAGAACAATTCTACACATTG TTGGTATCCATCTTTCTTCACCAGATGCCTCCCAAAACCCACCTGAATCATTTGAAGTCCATCTCAGCCCCTCTGAGAGT TACATTGAAGAGTTCAGAAGCAGGACTCCAACACTTAGATTTGACAGTGTTTGTTGCAGTAAGCAACATGAACATGATGA CTGTTCTGTTTGTCTTGCTCAGTTTGAACCAGATTCAGAGATTAACCGTTTGTCCTGTGGCCATCTCTTCCATAAAGTTT GCTTGGAGAAGTGGTTGGACTACTGGAACATTACATGCCCTCTTTGCAGGACTCCATTAATGCCTGAAGATGACAACACT CCTTGCTTCTAGTAAAGCAATGAGTGGCAATAAGAGAAAAAGTTTCATGTACAGTACTATAGTGTACATACTTTTGAATA GTTTTTGATGTTCGTGCATCTGAGTTTTTAAAAACCTTTTTAAACCCTTTTGCTTTTTATGATCTAGAGCTTGTGGAGGG TTTTTTTTTTTTTGCTTTTGTTACTGTATGTGCTCTTTAGCACAAATGAGGCCATGAGGGATACACTTTTTGGTTGTAAA TTGTGTTCTGTTCATAGTGCCTTCCTTGTTCGTTCTGAGCTTTAAGTTCTAAATTGGGCATTGGATTTGGATCCTGACAT GGTAGCATGAGTTATGGAATCCTTTTTCTGTTGTCCTTTAAACACTTTCATCACCTTGTGTATATCCAATGTAGTGTATA CATTGCTACATTTTGATTCAGTTATCCACTTATCCCAAAGTTACAAGCACTGATTGTTTTGATGTATATAACGTTTATCT TTTACATCATGAAAAATGGGGTGATTTTTTGGCTTTTTCTTTCTTATCTGTTGAAAAAGAAGTAAAAAGACAATGATTAT ACTTTTAGTAAATTAGTTCAGACATGGACTCATATGATACTCCATTCATGACACGTAGTTCTGCTTCTAGAAATAGTCAT CAATGACTTGAATGTAAAATTCAGTACGTGTCAATTAGGAAGACAGCACTGGCCACTGGCCACTGGCAACAGAATGGGGT TCAATAATAGAAAGAAAAGTTGAAGTTGTATTGAGTTGGACCATGATTTTTTGTAATCAGTGAAAAGATGTTACGTTTCT GGTATTGGAC
CDS sequence (LotjaGi1g1v0125300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTGAACACTGTGATGTCCATTTCCAT ATTCAAAGGCATTGTCAGAACAATTCTACACATTGTTGGTATCCATCTTTCTTCACCAGATGCCTCCCAAAACCCACCTG AATCATTTGAAGTCCATCTCAGCCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCAGGACTCCAACACTTAGATTTGAC AGTGTTTGTTGCAGTAAGCAACATGAACATGATGACTGTTCTGTTTGTCTTGCTCAGTTTGAACCAGATTCAGAGATTAA CCGTTTGTCCTGTGGCCATCTCTTCCATAAAGTTTGCTTGGAGAAGTGGTTGGACTACTGGAACATTACATGCCCTCTTT GCAGGACTCCATTAATGCCTGAAGATGACAACACTCCTTGCTTCTAG
Protein sequence (LotjaGi1g1v0125300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSSLPAPSEGVLCVLLVNTVMSISIFKGIVRTILHIVGIHLSSPDASQNPPESFEVHLSPSESYIEEFRSRTPTLRFD SVCCSKQHEHDDCSVCLAQFEPDSEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDNTPCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 144 | 144 | 1.4E-70 | – | |
| PANTHER | 1 | 144 | 144 | 1.4E-70 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 148 | 116 | - | – | |
| SUPERFAMILY | 84 | 142 | 59 | 2.29E-17 | – | |
| Pfam | 91 | 135 | 45 | 7.3E-12 | ||
| Gene3D | 91 | 143 | 53 | 1.5E-16 | ||
| SMART | 93 | 134 | 42 | 2.2E-6 | ||
| ProSiteProfiles | 93 | 135 | 43 | 12.637 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0125300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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