Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0127900.1

Overview

Field Value
Gene ID LotjaGi1g1v0127900
Transcript ID LotjaGi1g1v0127900.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease P/MRP protein subunit POP5, putative; TAIR: AT1G04635.1 ribonuclease P family protein / Rpp14 family protein; Swiss-Prot: sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5; TrEMBL-Plants: tr|C6T5D2|C6T5D2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0127900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:20419192..20424061) extracted from Lotus japonicus Gifu genome v1.2.

GGATAAGGAGGAGAGATAAAGAAGGCTGTACTGTAAACTCTTCTCCAATCAAAATTTGGGCATAAACCCATGACCCGACT CCGACCCGTTTCTCTTAATCGGACCTCATCATTCTAGGGTTTTTCTCTTTCTTCGTAGCTGCTACCTCCACCTCCATCCA TGGTGATCTAACCATATACAACAAAATTAATCATAGCATAGCTTATATATACCGCTGAATTTCGATCTGAGAATTTGAAT TTTCGATTTTGCGTTTTTGGGGTAAAAAATCATGGTGGCGTTCAAAAATCGATACATGGTGATGGAGGTTTTTGCGAACC CTAATAACGATCAAGTGGGGGGTGACCCAGTTATAATTACCCAGTTTAATGTCACAAAAGCTATCAAAGATAGCATCTTG GTGAATTTTGGGGAGTGTGGTTTGGCTTCATCACTGGGATCATTGCAGGGTGAGTAAACTAAAAACTAGTAACAAGTTTG CTGCTAATTCTTCTTGTCTTGTTGATATCTGATGAAATTTCTCTTATTTGATGATTTTCATGATTCATGGTTTATGTATT TGTTTGTGTGTGTGTGCAGTTAAGTATGTGAATCCAATCACTAATGTGTGTATCATTAGGACTTCAAGGGAGGATTATCA ACATGTATGGGCTGCTATTACAATGGTCAGAAGTATTGGAAATTACCCAGTGATGTTTAACATGCTGGATTTATCTGGTA AGAGTAATTACCACATGATTTGCATGGTTTTTTCCCCCCTTACCTTTTACAATTTTTGTTATAAAAATATTGGATCAGGG AAAAAAGAGGATTTTAGGTAGTATCTTCCCAGAAAGAAAATTGGGAAATTCTGGTCATTTTGCTTCATGCTATCATCTCC CATTGTCATTGAGTTGTTAGAGGAAGTGAAGAGATTTCTAAGAGAGAACTAAAACTTGCCTGATTGCAAGCGCCACCGGC CACGTACAAGGGGGTATTTATAGGTACAATGGAAAACTCTAGACTCTCTTCTAGGATCTTCTTAATTTAATACCAACTAC AGATTTTTCTACCCAACTCTTTAAGTATTATTCATTTAGATTTTACATAGAACACTCATGAAGCTATCTAGAACTATCTA TTTCAAATTATAAATATCATTTCTCCCCGTTACTTTGAAATTTTCCTTTTCATACCAAGCTTTGCTCTGAGTCTTTGAAA CTCTTCAAATTTTAGTGCCTTGCCTTCATGAAGATATTGGCAAATTTGATCTTGTCTCCTGATATAGTTGAGCTCCACTT CCTTTCTAGCAATGCATTGTCTTATAAAATGGTATCTTGTGTCTATGTGCTTGCTCCGCTCATGAAACATTGGATTCTTT GCAAGTGCTTGTGTTGGTTAGTTATTAATACAAGTTTCCTTAGCATTCTTCTTAGCCTTGTATACCCATTTTACTCCAAT TGTTTCATGACCCTTGGGAAGAGTTGTTAATTCCCATGTCTTGTTCTTCTTCTCTATAGACTTGATCTCTTCTATGGCTT GTCTCCACCTGTTGTCTCCACCTGTTATCTTTCACAGCTTCCTCAATTTTTTTTGGCTCTCTGTCTATTAGAAGGTAGTG TAATTCGTCAAGATCAAGAGTGACTTCATTGGACCTTTCATAAATGTCATGTATGTCTCTCATCCTTTTTGGCCTTTTAC TTGTGCTATGCATCCAAAGTCTTGGCACTAGGCTTCCTCCCACTCCATGCTTCTTGAGGGGTTTGACTTTTTAGATTTGA AGTTGGAGAGTGTTTGGACAAATATACTGCACAAGAAACCGCTTCAGCCCACAGCTCCTTAGGCATCATTTTATACTTCA ACATACATCTAGCCATGTTTAGAATGGTTCTATTCTTCCCCTCAGCTACTCTATTTTGCTGAGATAACCAGGAATTGTCA ATGGATGACGAGTTCCACGATTCGCACAAAAATCGTTGAACTCCTTTGAATTGAATTCTCCTCCTAGATCATATCTCAAA TCTTTGATTTCATAACCACTTTCCTGTTCTACAAGAGTCTTGGAATTCTTAAAGGCAACAATTGTTGTTGCTTTAGAAAA TAAACTCATGTTTCTCCACTAAAATCATCAATGAAGAGTATGAAATATCTACTCTTCCCAAATGATGGTGGATTAATGCA GCTGCTTTTGGAAAAAAAAACTCTGCATGATTTCCAAGGAGGCATCCTTCACATAATTTATTAGAATGGTTGATTAGCGG CATCCCATTCACCATTTCCCTTTTCCCAATGTTTTAAGAGTCCAATGTTTAAATGGCCAAACCTCATGTGCCAACACTGG GTCTCATCTAGAACACTAAGCTTCAAGACTTTGCTTCAATGCTTCTTAGATTCAAGATAAACAGACTATTTTTTTGGTAT GATCACCTTAGCAATTAAATTATTATTTCGATATCTAAGCCAAAGATATTTATCTTCCAGTAGAATCTTGATCCTTTTTT GAGAAGTTGGCCTAAACTCAAAATATTACTTTTCATTTTAGGCACATAATAGACGTCATTAATCATCTTATGACTTCCAT CTTTGGAGGAGATTAGAATTGTACCTTTCCCTTTAATTCAGACCTTCAAGCTTCACAAGTTTCTCTTTATATCCGCACAT ATGAGTGCTAGCACCATTATCCAAGTACATCATCTTGGGAGTTACGGAACGGAGGATCTCCTCTATCACACGTACATCAT CTATTTTATCTATATATATCTTCTGTTGATTAATAATCTTCTTTACTCTTGAGAAATAATCTGCAATTGTTTTGGATTCC TTCATCTTCAAAGCTTCAAAATCACCCTAGTGATTAAACTCGTATCTTCTTCTACTTCTCACCGTGTTGTAGGGATTTTT CCAAAATCTCTCCAGCTTCCTTTGAGGAAGTAGCGTAGGCAACTTTCTCAAACATGGAAGCATTGATGGATGAGATTGAG GGCTTGTTGATCTTTCTTCCTTGTCTGTGACAGAATATCCTTCTCAATTTGAGACAACCCTTCATTTTGTAGCTCCTCAT AGCCTTTCTCTATGATCTCTCATGCACCTTGAAATCCAAGCAATGCTTTCATGCGAAGACAACATTTTCACAATTCTCCT TTTTAAGACAAGGAAATTGGAAACGCGTGTATCCATTGCTCGCCATCTCTCAAACACTCTCTATGCTTTTCTCAACTCTA AGATCAAACCAAGCTCTTGATACCACTTTGTTAGAGGAAGGGAAGAGGTTTTTAAGAGAGAACTCGAAAATTGCTTGATA GCAAATGCTAAGTACAAGGGGGTATTTATAGAGAGGTATAATGGAAAACTCTAGCCTCTCTTCTCGGATCTTCTAAATTT AATACCCATTATTTTTCTACACAACTCTTTAAATGTTAATCTTCTAGATTATACATAGATGATAGAACACTCATGAAGCT ATCTAGAACTATCTATTTCAAATTATAAATAACATGAGTTTCGTTCAGAGTTCATTTTAGTCTTTGTAATCACCAAGTCC TGTTATACAGAACACTACTTTTGTCGGAAAACACATGCCTATGTATGATCCTGTCTCTAGAATCTTTCATTGAATTACAA TAATAGCAATGCATTTTTCATTTATAATTTATATTTCATTACCAGTTCTATGGCCCCGTATTGTCGGTTTTTCATTTATG ATGAAATTTATTGTCAATTAGCATGATACAAAAACTGTGAATTATGAAATGGGAGTCAGCTCATGAGCACAATTAGTGTT AGAAATACTAAAATTAAAAGATGTGTGCCTTGGTATAGACTAAACTAAAGAGTGAATTGAGATTTTGGATTTCTCGGCAA TAGTAGACAACCATTCATGGCAATTTGATTGAATGACATGGACGGTGTTTTAGTTCGAAGATTCCTATGAAAAAGGTGGA GGAACTTTTGGAGGGAAGTTGGTTCACGGGAATTTGATATCCATTGTTTGTGTGGCGTGGACCTTGTTTTGGAATTTACA AATATAGATTAGCATTGCATCACTTTTCTTAGTTTCCGATTAGTAGCAATTTATTGATTCCTTGATGCATCGTACTATCA CACTGTAGATTAGTTTGATTTACGGAACAGTATCCTTACTATCATCTGAATGAAGCTCCAACAATCTTCTCTTTGTTTCA CCAATTTGATTACATTTTGTCATTGGCGATATGACTAATATTTATCTTTTCCGACAATCCTGATTTGAAATGTTACCCTT TTGGTTCAGGAAGTTTACAGGCTTGTAAAAAAGCCGCTTTGAAGTGTGAGGAATCAAAGTTTGAGCAGTATAAACTTAAG GTTGGTGATCGATTCTCAGATGATGATACTCATCGCATAAATAGCTACCTTGACCGTATCAAAGTTCTGGAGCACTGAAT ATTTGGCCACCGGCAAGTGCCTCATTAAGCTTTCTCAGTTTCTCGCAATTAGATTGTGTTCAATCACAAATTGCCCACAA CTCTAGGTGAGGTTTAAATCTCTATAGTCATAGGTTTTGTGTTATCTATGCTATGCTAGTTCAATGCACACAGCAGATAC TGTCTCACTTACCATTTCTCCTGGAGTGTACCTGTGGTAATACCTAATGTATGGAACAGAGTTACAGAGTTGAACCATGA GAGAAGAGGCTTGTAGAAATGTGTAAATTTGCAATTTTGTTTGCTCTTATAATTAGAAATCAACTAAATTTTATTTGTCT TTAACAATGATAAGATTTTTCATATTAGTTCGCACATGAATAAAAATCCTTGTTAATCTATTTATAGATTTTATAGAAGG CATGATTCTAAAGGGATCTTTTTTTTTTTCTTTTGATTTATGGGACTGCATCTAGTTTTTTCATTTCTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0127900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGCGTTCAAAAATCGATACATGGTGATGGAGGTTTTTGCGAACCCTAATAACGATCAAGTGGGGGGTGACCCAGT TATAATTACCCAGTTTAATGTCACAAAAGCTATCAAAGATAGCATCTTGGTGAATTTTGGGGAGTGTGGTTTGGCTTCAT CACTGGGATCATTGCAGGTTAAGTATGTGAATCCAATCACTAATGTGTGTATCATTAGGACTTCAAGGGAGGATTATCAA CATGTATGGGCTGCTATTACAATGGTCAGAAGTATTGGAAATTACCCAGTGATGTTTAACATGCTGGATTTATCTGGAAG TTTACAGGCTTGTAAAAAAGCCGCTTTGAAGTGTGAGGAATCAAAGTTTGAGCAGTATAAACTTAAGGTTGGTGATCGAT TCTCAGATGATGATACTCATCGCATAAATAGCTACCTTGACCGTATCAAAGTTCTGGAGCACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0127900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAFKNRYMVMEVFANPNNDQVGGDPVIITQFNVTKAIKDSILVNFGECGLASSLGSLQVKYVNPITNVCIIRTSREDYQ HVWAAITMVRSIGNYPVMFNMLDLSGSLQACKKAALKCEESKFEQYKLKVGDRFSDDDTHRINSYLDRIKVLEH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10993
1 138 138 2.2E-49 –
PANTHER
PTHR10993:SF12
1 138 138 2.2E-49 –
PIRSF
PIRSF023803
1 145 145 4.6E-19
IPR016819
SUPERFAMILY
SSF160350
1 119 119 1.07E-30
IPR038085
Gene3D
G3DSA:3.30.70.3250
2 119 118 1.1E-16
IPR038085
Pfam
PF01900
7 115 109 1.0E-27
IPR002759

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004526
Molecular function Ribonuclease P activity Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor.
Subterm of
GO:0004540
Molecular function Ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0016070
Biological process RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0127900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…