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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0128300 |
| Transcript ID | LotjaGi1g1v0128300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein 13; TAIR: AT3G49590.1 Autophagy-related protein 13; Swiss-Prot: sp|Q9SCK0|AT13A_ARATH Autophagy-related protein 13a; TrEMBL-Plants: tr|A0A0B2RZV3|A0A0B2RZV3_GLYSO Autophagy-related protein 13; Found in the gene: LotjaGi1g1v0128300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20481190..20484972) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTTGCAGGGTGGTAATATGCAGCCTGAATTGGGTAAATTGGAGCAAATTGTTTATCAATTTCTTTTGAAGTGCTT ACACATCATTTTGGACTCGAGGGTACCTTTGTTACGCCCAAATGATAGAAGTGGTGACATGTCGATTGGTTCTCATTCTC GTGTGAAGAAGAGTGACAAATGGTTTAACCTGGCATTAGGTGATCGACCTTCTGCTCTGGATAACTTGCACTTCTGGCAC AGGAATTTGATGGATCCTATGATTATTGACATCATACTAGTTCATGAAGAGATTAGTTCCTCTATTGAGACAGTTATAGA GAGGTGGGTTGTTCAGTATGAGTGTCCCCGAGTAATGGCTCCTCAGACTGGTGACATTATTGGTGCTTACAAGAAGGCAT ACCAGAAGTCTATAGTACTGTTCCGTGCTCTTTATTCTCAAATGAGGCTTCTGCCGGCTTATAAGATATTTAGGAAGCTA AATACATCAAGTCATACTTGTAATTTTGATATTATTTACAAGGTATCTTCCTTTAGTGATCCATTTTCTCGGGCAGAAGA GGGACTGCTGGAAGAGTATAATTTCACTCCTGTTGAGGCCCTTCCAGGCCGCCTCAGTATATCTGTGACCTACCGTACTA CACTATCTGATTTCAACCTTGAGTGTTCAATATCATTACCACCAAAAATAATTACTGATTATGTTGGAAGTCCCCATACT GACCCTTTGAGATCTTTCCCTGCCTCTCAAAAGGGTGTCTGTGCTACTTCCTTTCCAGTAAGAGGGTTAGCTCCTCCATC TTCTGCACCACTTGAACGACCTCATAGCTGGACGAGTGGCTTCCATAAAACAGCGCCTTTTGTACAGAACTATCCACATG TTGGATCCCCACCGGTGTATCATGCTTCTCCCAATCCGTATGATTTTCCATCATCACCTAATGATAATTACAATGTCAGG TATCATAAATATCGAATACAAAATCAGCAAAGGTCTACAAGTTATGATGAGCATCAACTTTCTCCTCCATTCTCACCCTC ACCATCTCCATCACCACCTACATACTTACATGGAGGCAATCTAATGCACACCCGTATACGCCCTGAAACAGCCCCCGTAA CTATACCGCATCCAATGATGGGAAAAGGCTCCAGAAATCTTTCTCCTAATTTTTCTGATCCAAGTAGAAATTCTTTGCCT CCTTTGTCTCCCAGAAGGAATGATACTTCTTCATCACAGGAGTCTCCATCTGGAGTCAGATCATTCAGGAAAATAGAAAC TTCAAAGATTGGCCAAAAGGTAACTTGGCCCTTCATTTCTACTCCTGAAGTTCAAATCATATGTGTTTTAACTATTTGTT AAGACTTATTTTTGCTCCATAGATTGTCAGAGATAGCAAGGATGATTCAGGGCGTTTCTCTGGGTTGTTATCTTCAAGCG GCTCACCACGCATTGGATTTTCAAGGACATCAAGTAAATTATCTTTTCAGGATGACTTGGATGATGGCGACTTTTCCTGT CCTTTTGATGTTGATGATGTTGACCCACCAGATGTTCTGTCCAGGTACTATGATAGACTTCAGCATTCATAACTAAAGTA TTAGTCATCTTTATGGTTACTGTAAATTCATGGCATTAACCTATTTTACCTTTAGCAGATGCTCCTTCCTGAAGTCAAAT ATAATTTTCTAGCTATACCCCCTATGATGAATTTGTAATTTTTAAAACCTTGACAATTAAAGATTATATTGGATGTGTAA CTTGTGCCTAACTAGATGTTCGTTTAAATTGCTAACTTGGTAGGAATGGTCAAAGAAACAAGTGAGGGTCTAAATCTGCA TTTTCTGAACTTTTTTTTTTGAACACTGACAAGGTTTCTAGCTTATGTCAAGAGAATGATAAAGAAACTATAAATATTCC ATAGTATGCTCATGAAATAACAAAGCACTAGAATATTATTTGATGTTGTGGATTAGTTTTTGTGAGATTTTATAGATGTA TTTCCTAAGTGTTATTATTTATTAGATTTTGAAAGGTTTCAAAGTCAAGATTTTATGCAAGACAGGCTATCTCTGGAGGT TATTTAATCCTTTAGGTTTGTTTGTGAGTATTTTTCCCATCCAAATTAATTGGTTATTAATCAATAAGAAGTTTTAACAA TAATATTTACTAAGATAATTTTAGTTGATTTTAACAGTTGGCCCATATAAGCCCTGATAAATTCAACTTCTTTGTATCAA TGATAATAAAAAGACAAAGAAGGACATTAATTGTTATTAGAAAGGACATAAATCCTATATCAGAATTCAAAACTAAAAAT AAATAAGTGAAGGTTCTTATTTGCTGTTCTTCCCATACTTCATTCAAAATCAGATAATTCAGAATTATTAGAAATTAAAG TGGAACCTAAATTAAATTTTACTTCTTATACATACAGAGGTGTTTTTCTGTTTCAAAAAAAAAAAAAGAAGAGAGAGGTG TTTTTCAGACTTTCTGCTTCTGAAATTAAAAAAAGCTTATGCCCCACAATCTTGTCAGTGCTGATATTTATGATTTTTGC CATTTAAATATAGAGGGGGTAAAAGGAGAGAATGGAGGCTAAGTACTATGAAATTGATATTTGCTTGGTATGAGATGATG TAGAGGTTGATGTTAAAAAAGACAACATTAACCCTTATTTATACTAATACTTGAAGTGATTTTGTAGGGATGATCATCAA TTGAAATTTCCTGGCTAGCAATTATACTAAACAAAAACAAAACTACTCGAACAAATTCATCAAGATTAGCATTTGGAAGG TTCAAAACACAAGAAAAATTAGGAGACCAAAACATAATTGAAATAAAAGGAGAGAATCAAGACAAAATACTTTGAGATTG ATATTCACTTAATATGAGACGACGTGTTGGATGACATGACAAAAGATGAAGTCCTAACCGTTGTTTATCTGTATCTCTTA GTTGCCTTAGCTTTTTCATATATTAGGACTTAGGAGGTGAGTTTTGAGCTAATGTCTGTGCTTTGACATCCTTGAAAACT GAAATCAAACATGATGGGTTCTACTTTGGCAACTTGCAGTTTGTTGGCTTGATATATAAGAATGTGTAATTGCATTTCAT TTCTCCTAGAGTTCCTTTTTTTGATTTGAAAGCCTGCCACCATTCAGTGATCCTTTTAGAAACTGATGATATCTTGGATT GTATTTTTCTGTTTGATTGCCTTTTCTAGACTGTTTGTTAGTATGTATAATAGGGAGGAGTTATATAGAATGGTCAATGG TCATATTGACAATACTACTTAAGCCTCTCTTTTTCATCGAAAACTTATGCCTTTGTTAGATGTTAGGAAATGCTGTTTTA CCATGCTATTCTCATCTTATCTTCTGCTTAGAGTTTGACCTGTCTTTCTAAATGTCCATGGTTTGTAATTTAGAATCTAA TTAGTTTTTTTTATTCTGTGGGCAAAATAGTCATAATGTGGATGGGAAGAGCGCTTCAGAGTCCCCTTCAACATCATTAC CAATGGGGAGAAAATCACAAGATGCTGCTGTTGGCGTTCTTGTGCACATGCTTAGGACAGCGCCTCCTTTGCGCCAAGAT CCAAGTTGTTATTCATCCCATTCCCTAAAGGCTGAACCTGGGGTAGGAGCTGCTACTGCTTCTGGATTCTTCATGCCTCG AAAGACGGCTGATGCACTTGAAGAGCTCAGGAGTTACAAAGAAATGAGAGACCTTCTTCTATCTAAGAGCGGGACTCGCA TTCTGAAAAGAGATGAAGCTTAA
CDS sequence (LotjaGi1g1v0128300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGCAGGGTGGTAATATGCAGCCTGAATTGGGTAAATTGGAGCAAATTGTTTATCAATTTCTTTTGAAGTGCTT ACACATCATTTTGGACTCGAGGGTACCTTTGTTACGCCCAAATGATAGAAGTGGTGACATGTCGATTGGTTCTCATTCTC GTGTGAAGAAGAGTGACAAATGGTTTAACCTGGCATTAGGTGATCGACCTTCTGCTCTGGATAACTTGCACTTCTGGCAC AGGAATTTGATGGATCCTATGATTATTGACATCATACTAGTTCATGAAGAGATTAGTTCCTCTATTGAGACAGTTATAGA GAGGTGGGTTGTTCAGTATGAGTGTCCCCGAGTAATGGCTCCTCAGACTGGTGACATTATTGGTGCTTACAAGAAGGCAT ACCAGAAGTCTATAGTACTGTTCCGTGCTCTTTATTCTCAAATGAGGCTTCTGCCGGCTTATAAGATATTTAGGAAGCTA AATACATCAAGTCATACTTGTAATTTTGATATTATTTACAAGGTATCTTCCTTTAGTGATCCATTTTCTCGGGCAGAAGA GGGACTGCTGGAAGAGTATAATTTCACTCCTGTTGAGGCCCTTCCAGGCCGCCTCAGTATATCTGTGACCTACCGTACTA CACTATCTGATTTCAACCTTGAGTGTTCAATATCATTACCACCAAAAATAATTACTGATTATGTTGGAAGTCCCCATACT GACCCTTTGAGATCTTTCCCTGCCTCTCAAAAGGGTGTCTGTGCTACTTCCTTTCCAGTAAGAGGGTTAGCTCCTCCATC TTCTGCACCACTTGAACGACCTCATAGCTGGACGAGTGGCTTCCATAAAACAGCGCCTTTTGTACAGAACTATCCACATG TTGGATCCCCACCGGTGTATCATGCTTCTCCCAATCCGTATGATTTTCCATCATCACCTAATGATAATTACAATGTCAGG TATCATAAATATCGAATACAAAATCAGCAAAGGTCTACAAGTTATGATGAGCATCAACTTTCTCCTCCATTCTCACCCTC ACCATCTCCATCACCACCTACATACTTACATGGAGGCAATCTAATGCACACCCGTATACGCCCTGAAACAGCCCCCGTAA CTATACCGCATCCAATGATGGGAAAAGGCTCCAGAAATCTTTCTCCTAATTTTTCTGATCCAAGTAGAAATTCTTTGCCT CCTTTGTCTCCCAGAAGGAATGATACTTCTTCATCACAGGAGTCTCCATCTGGAGTCAGATCATTCAGGAAAATAGAAAC TTCAAAGATTGGCCAAAAGATTGTCAGAGATAGCAAGGATGATTCAGGGCGTTTCTCTGGGTTGTTATCTTCAAGCGGCT CACCACGCATTGGATTTTCAAGGACATCAAGTAAATTATCTTTTCAGGATGACTTGGATGATGGCGACTTTTCCTGTCCT TTTGATGTTGATGATGTTGACCCACCAGATGTTCTGTCCAGTCATAATGTGGATGGGAAGAGCGCTTCAGAGTCCCCTTC AACATCATTACCAATGGGGAGAAAATCACAAGATGCTGCTGTTGGCGTTCTTGTGCACATGCTTAGGACAGCGCCTCCTT TGCGCCAAGATCCAAGTTGTTATTCATCCCATTCCCTAAAGGCTGAACCTGGGGTAGGAGCTGCTACTGCTTCTGGATTC TTCATGCCTCGAAAGACGGCTGATGCACTTGAAGAGCTCAGGAGTTACAAAGAAATGAGAGACCTTCTTCTATCTAAGAG CGGGACTCGCATTCTGAAAAGAGATGAAGCTTAA
Protein sequence (LotjaGi1g1v0128300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLQGGNMQPELGKLEQIVYQFLLKCLHIILDSRVPLLRPNDRSGDMSIGSHSRVKKSDKWFNLALGDRPSALDNLHFWH RNLMDPMIIDIILVHEEISSSIETVIERWVVQYECPRVMAPQTGDIIGAYKKAYQKSIVLFRALYSQMRLLPAYKIFRKL NTSSHTCNFDIIYKVSSFSDPFSRAEEGLLEEYNFTPVEALPGRLSISVTYRTTLSDFNLECSISLPPKIITDYVGSPHT DPLRSFPASQKGVCATSFPVRGLAPPSSAPLERPHSWTSGFHKTAPFVQNYPHVGSPPVYHASPNPYDFPSSPNDNYNVR YHKYRIQNQQRSTSYDEHQLSPPFSPSPSPSPPTYLHGGNLMHTRIRPETAPVTIPHPMMGKGSRNLSPNFSDPSRNSLP PLSPRRNDTSSSQESPSGVRSFRKIETSKIGQKIVRDSKDDSGRFSGLLSSSGSPRIGFSRTSSKLSFQDDLDDGDFSCP FDVDDVDPPDVLSSHNVDGKSASESPSTSLPMGRKSQDAAVGVLVHMLRTAPPLRQDPSCYSSHSLKAEPGVGAATASGF FMPRKTADALEELRSYKEMRDLLLSKSGTRILKRDEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 592 | 592 | 2.9E-235 | ||
| PANTHER | 1 | 592 | 592 | 2.9E-235 | – | |
| Gene3D | 12 | 218 | 207 | 6.2E-47 | ||
| Pfam | 19 | 101 | 83 | 2.8E-10 | ||
| Pfam | 103 | 214 | 112 | 1.3E-21 | ||
| MobiDBLite | 329 | 360 | 32 | - | – | |
| MobiDBLite | 372 | 461 | 90 | - | – | |
| MobiDBLite | 385 | 422 | 38 | - | – | |
| MobiDBLite | 426 | 443 | 18 | - | – | |
| MobiDBLite | 444 | 461 | 18 | - | – | |
| MobiDBLite | 479 | 514 | 36 | - | – | |
| MobiDBLite | 496 | 514 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Autophagosome assembly | The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm. | ||
| Biological process | Autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. | ||
| Cellular component | Atg1/ULK1 kinase complex | A protein complex consisting of Atg1 (or Atg1 homologs e.g. ULK1, ULK2 in mammals) and Atg13 along with other proteins that regulate its function (e.g. Atg17 in yeast or RB1CC1(FIP200) in mammals). This complex has serine/threonine protein kinase activity and is involved in autophagosome formation. |
Expression pattern of LotjaGi1g1v0128300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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