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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0128900 |
| Transcript ID | LotjaGi1g1v0128900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G01960.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2; TrEMBL-Plants: tr|G7KDC0|G7KDC0_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi1g1v0128900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20545812..20552421) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAGAAACTGACCTACTTATTTAAAATAAAAATATATTAAATTAGTGAAAATTTGGCCAATATTTCCATGTTTTTT CAAGCATTCACACATATAATCAAGTAATCAACACTTTTGAAACAAAAACAAGAAAAAATAGAGAGAGAAAAAAATAAAAG GAAAATGAAGGTTTCAGCTCCATGACTTTGACTTTTCTCCTATCCTTTCATTCACCTTCACCTTCACCTTCATCATCATC TCATTCTTCATTTTCTGCCACCATTGCTGATTGTTGAACTCAATCCTCTTCACCATTAAACCATTTCTCAAGTTCCATTG TATTTGGGGCCCAAATTTGCTTCCTTTTTTTCTCCTTTGCTTAATCCATAAGCTCTCAGGTGAGGTATAAAGCTAACATA CCCCTCTTCTTTTTCATCATTCATTGCCTTCCATTCTCACCCTTTCTCCTTGTTTTCTCTCCCTCTCTAACAGTTATCTC TATACCCTTTTCAGGGCAGAACAAAAAACAGGAAAAAGATTGTTTTTTTATCATTTGTGATCAAACCCCACATTAGAAAT TAGTAGAAAAAGAGGAAAAATCAAGCTATTGAGGAAAATTGGGGATTAGGGTTTTTTTGGTTTTGTCCTAAAGATGGAAA CTTTGGATGGTAATTCAGACCAATACGCCACTGTTTCTTCTAATTCACCATCGTCATCATCTGGAGGGTTTAATAGTAGT GATGATCACAACAATGGTAGTGTGTCTTGGTATGGGATGAGGTTACCTTCTGTTAACCCTTTACGGTCCCCGCTTTCGTT GTTGTTGGATTACTCTGGCATTTTAACCCAAACCCATGATTCTGGGTCTGTGATTGTCAACAATGGTGTTCCGGCTTCGG AGATTCGGTCTCAGGTTCAAATGCAGCCATTTGATGATGCTGTGGGGGGTAGTGCAGGGGAAGTTGCAATAAGGATCATT GGAGCTGGGGAGCATGATCAGAATCAGATTGGGGAAGTGGGGTTTGATGGTTGTGATAATCTGATGGGTGAGAGAAGAGG TGCTGGAATGTCTCCGTTGGACGATGATCCTGAGGGTCGTGGTGGAGCTGCGGTTAATGAGACGGTTCCTTTGGTGTCTT CATCGGCTTCGTTGGCAGGTAGTGTACAGGGTGATGGTGATGCTGCTGGGAATGGTGCAGAAAGTGACAGCAGGGGTTCA TCATCCTACCAGAGGTATGATATTCAGCAGGTCGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTGTTGAT TGTTTTCATCAGACAGCATTTACAAGGTATTACCCCTTCTGTTTCTATTCAATGGTTCTGTTGTTTTATGTCTATGATCT TAATTTTGCTTCAACAAAATCATGGAAAGGCATTTTACATTTTCCTTTGCTTACTGTTTACTTTTTATCAGTTTATGATT TATTCATTACCCAAATATTGGGGTTGTTTCTGATGTATATTATATGCTAGTCTTTAATGTAATGGCTGAACCAAGTCCAT AGATAATTATTCTTTCCAGTTTGCTTTTCTGTGTAATGCTTTTAACAGTTTTGCTTTCATTTGTGTTTGGAGCCCTGGCT TGTTACTTCTTAGGGGTTAGGGAATATGCTTGGTGGAATAATTGTAGGATAAATAAATGATGCATGCCATTGAGAGTGAG GAAACTATGAAAGTAATATCACTTAACATCTTGACATCTCGTCTTGTTTTAATTCATTTTAGTCTTACTACCTTGTTAAA TGTTTTCTATTAATTCAATGTCCAACCAAAAACTGCTGTTGTGGTTTACACTACTGTATGTTATATCTGAGGGAAGGGCT CAGGGGAAGATTTTTGAGGACCACATGGGTCTTACCTTTCTTTTGTTTTCTGTTTCTCCTTCCTGGGGGTGTCCCAACTT TGTAAGAAAATTGCAACTTTGCTAATTGTAAGAAAGGTAAAAGCAAACCTTGTGGAGTTATCTAAGCGGTGATGTTCTTG TGAAATGTGCTTGTAGTGATCATTTGTTAACAATATGTAAGATTTACTTAATGATCATCAGTATGTACTTTGCTTTTTAT CTGTCTGTTGAGTTGTAATTATGTCTTTTTTGATTCACAACCTCTTCGATTGTGTCAAAGAAGGATGCACACACCCCTAA TCACATTCAGTTTCAGTTACCTCTTAATTTGTACTTTTGGTTATATGAGATATCCACATTATTTGGTGATAATCATTTCT GAAAACTTACAGGTTTCTTTGTCACTATTTGGATATCAGCTGTGATGTTCAAATCGAATGAAATTGTTAAGAAGCAGACA GCTTTAAAGGTGCTTCACCCTTTGTTAATCCTTTAATATTTCCATTTCTAAATCAAATTTCTATTTTACAAACCCTAACC TTCATGCCAAAATTGAAGAGATTCTAACAAAAGTTTTATTTTGTAGGGAGATAGGAAAGTGTCTGTACTTGTCGGTATCT CTTTTGCTTTCATTCTTCAGGTCACATGCATTTACTGGTGGTATCGAAATGATGATCTCTTATACCCACTAATCATGCTT CCTCCTAGACCTACACCTTTCTGGCATTCAGTATTCATCATCTTGGTCAATGGTATGGACTTGTTCTGTGTACGCACGAC TCAGTTATTTTTTTTTTTATAGGAAATAAGAAATATATTGAAGAGAAGTACAAGGGGTACTTCAACCCAAAGTGGATTTG TGCTAGACCTTTTCTTTGTAGTTTTGTACTAATTTACTTAGTGACATAAATTTATCCCCTTAGTGTATGGTTACAATTAA AGTTAAGCTTCTTATAAATAAGTGTGCAGTCTAGGTAAAACGCTAAATGCTTGACACACTGACACATATGCAATTATTAA AAGAGGAAACAATGTTAAAACAAAACGATATTTTTGTAATTATAAACAAAACATATCAACTCAAAATTTAAACAAAAAAG CAAACCAAATGGACCCAATATTTGCTTCAATGTTTGACTTGTTTTTTGGCATTGATAGTTGAATATGAGCAATCTGTTTC TGAATGACTTTAAGTTTTATGAAAACAATTTATTTTTTGTGTTAGGTCTGCGACAACCAACGTAAAACTGACTGTATCTT TAATACGGATCATGTGATCCATATAGCCGACCTCACTTAGTGGGATAAGGCTTTTTTATTTTGTCTTAGGTGATTGTTTC TTTGTGTTTCAACTGTCCCTTAATGTTGTCGTTTTTATGGCCTTAAGTCTTTCTAATTTTTGTTGGTGTTAATAATTACC ATTTACATTGCCTTTCAGATGTATTGGTGCGGCAAGCTGCAATGGTTTTCAAGTGTTTCCTGCTTATATATTACAAAAAT GGCAAAGGTCATAACTTCCGCCGGCAGGTGATTAGTGTTTTCCATTTACATACAACAGCATGTAATTTTCAAGTGCATTT AACATTTTAACTGCTATAACTGATGAAATTGTCTAACTTCATTCTAGGCTCAAATGTTAACTTTGGTTGAGTACATGCTG CTGTTGTATCGTGCCTTATTGCCAACACTGGTTTGGTACCGGTTTTTCTTGAACAGAGATTATGGCAGTCTCTTTTCGTC ACTGACTACAGGGCTTTATTTAACTTTCAAGCTAACATCTATCATTGAGAAGGTGTGTTTTCACTCTTTAAAATTAGTTC TTGCAGTTTTATATTTGAAGATATTTGTGTATGATGCTTAATTATCCTTTGTTTTCAATCTTCTGTGGTTGTTAGGTCCG AGGCTTCATTTCTGCCTTCAAAGCATTGTCAAGAAAGGATGTTCATTATGGGGTTTATGCTACAATGGAACAGGTAATAT TCCAGTTTACGTGTATATGTGTGCACGTGCGTGCATATTCAAGTTTTGTGACTTTATATTGTTTGGAACTTTTACTTTTG TTAGACGGATAAGAAAGTAAGTTGTAGTTAGCTATTATCCTCCAAGTAATAGGTTTCATCAATCTGATACTAAAGCTATG TAAGTCAATACTACTAATGTCTATAAAATTAGTTAAAAACAATTACTGTCTATGACATTATGGGTCATGTCTTCTAAGTG TAGCTTATATGTATCAGTCACTTAACTAATCACATTCATCTTGGAGAATGTGATTTTTTCTCATGGCACTCCCATATTTT ACCCTTCTATTTCTTTGAAACTTTCAGGAAAAAATAAAAAAAAAATTCTCAAAGTTAGCGAGGGAATGAGGGACATAAGA TTTTTTGCAAATGCTCTTATTTCTCTATAGCTTTTCCTCCACTCTCCATATCCGTTTCATTGGTCCCAAAACTATATTTT TTGTCTGTTCAGAATCTTGACCTTGTCCTTCAAAATTTGGAACTACTTCTGCTAGGTAATAGTAGGTTTTTATACGAGTA AAGGAAAGATGAGCTCTTGGCAATGTACCTTATTTGCAATTTCATTGTATCAATGGAAACTTTGAGGATAAATTCTCGCT GTTGTTTTTTATATTGCAAAGGTGTATTCTTGGTTTTTCCATGGTTCTAGTCATTGGCTACTTTTATTGGATTTTTATAT GATATGCGGTTGGATGAACCCGCCTTATTTGCAGTTTTATTGAATCTTCAGCTTAAGAGAAATTTAGAACTTTCCCAGAT AAACCCCTGTCCTTGCATTTATTAATGGATACTGCTGGTTGATGGCTATTTTCAAGGAGATTCATTGCTATATGGAAAGG GGCTGGGGAGCTTTGTTATGCCAATGTGGTTTTCTTCTGTATGATGCTATTTTGGAATTTTTCTTTTGGATGCTGTATTC TGTCCTTTTGTTTTTCAAGTATTCCTTTCCAATTGAGTTTCTTGATGTTTAAGGATGAAAACTTGTATTAGTATATGTTT ATAAACGATTATTATATAGAATCTTTTTAACTATGTTTCTGAATTCTAATTATTGGAATACAGGTCAATGCTGCTGGCGA CCTATGTGCTATATGCCAGGAAAAGATGCATTCCCCAGTCTTGTTGCGCTGTAAACACATTTTTTGCGAGGAGTGTGTAT CAGAATGGTGAGTTCATCTACAGCTTTTATTTTAAGTTCACATTATATTTAGGGTAGGGTAATAAGCTAACAGTATTTCC TGGAAATTTCAACTATTAATTATTTAATTCTCAAGAGTGTCATATTTCTATGAAGGTTCTAAAAAATATTTTGATTTTGG CTAATGGTTTTCATATCTCCCTTCCACAGGAAAAGTCATGTATTTGCTATTTTTATTTGGTGTAATAATTTCCCTGGAAT AATTCATAAAATTAATGAATGGTTTGCTGATTTACAACCTCTTAACAGTTGAAACTCTGGTTTATTATCCATCTGCATAT TTATTTTTGCTAGGATGTGATCTTTCCTGTAAAATAAAATTCCTTCTTTAGTGTACCATATGTTCTATCTAATCAGTTAA TCATATTATAGCATTAAACATTAGTAAACTTATGAATTATATGAAATGGAATGTAAGAATAGCTAAGTGGGAAGGAGAGG GTTCCCTTGATAATCTCATTATTCTACTTCAAACCAATGAGGAATGAACAACATGTTATGTTAAAGCCTTAAAAGGAAAT TGAATATAGAAAGTGCGCTTCTGGTGAAATTTTATTTGTCGCCACTTAATAGACATCAAGGGCTACTTTGATTCCCTTCT TGGTTTATAGGTTAAAAACTATTTTCAAAAGAAAAAAAATTAAACATGTTTTTCAAAAGAAGAAAAGAAAAAAAGCTTCT TAATGGAATAGGTCCCAAATGTTTGAATAAACTAAAACTGTTTTGAGAACTTGTATAAGAGTCAGTTAACTTGTATTCTG ATTTACCTGTAATATTGTTTATGACTTCTCTCTTGACCGCTTCTCTTTTCAGGTTTGAGAGGGAAAGGACTTGCCCACTA TGCAGAGCATTGGTGAAACCTGCTGATCTTCGGACCTTTGGAGACGGATCAACAAGTCTGTTTTTCCAGTTGTTTTAAAC ACATGGTCTTTCGGTTGGATCATAGTTTTGGGCCACCCTCCGCCTTAAAACTATCGGGTTTATTGCTCTAATTTGATAAG ATTTTTCATCCATCGATTCTGGGGAAATAAGATTGTAGGGAATCATCAGGGCATGGCTTTCGGCTAAGGATTAAAAGTTA GCGTTCTCTTGTGACGATGTCACATGTACAAAGGACTTCACTCAGCTGCCACATACTAAAATTTGAGGGAATTTACTAAC CTGATATGTTCCACACATCAGTGTGATGAACACAAATTTGTTCATAACGTTGAATCATTTTGAAATTCATCTACCTCCCC CAACCCCACCACCCTTTTTCAAAGTATGTATATGTTTCTATACAGGCTTTTTGCAAATATGTCAAATGAGTTGTTCTTGC ACTTGGAAGTGCTGAAAATTGTTATTTATATAAGAAATTTGGATTTGGATGATGCTTTTGGTGAGTGTGCATGTCTTTTT ATCTTTTAATTTATTTTTTCTTTTATTCTGGGGTGTAAAACTTCTCCATGAATTGCATACCAAATGTTTTATTCAATAAC GAAATTATTTATCCAAACATCACCTGGAAATTTGTGCAATCCATCCCAAT
CDS sequence (LotjaGi1g1v0128900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACTTTGGATGGTAATTCAGACCAATACGCCACTGTTTCTTCTAATTCACCATCGTCATCATCTGGAGGGTTTAA TAGTAGTGATGATCACAACAATGGTAGTGTGTCTTGGTATGGGATGAGGTTACCTTCTGTTAACCCTTTACGGTCCCCGC TTTCGTTGTTGTTGGATTACTCTGGCATTTTAACCCAAACCCATGATTCTGGGTCTGTGATTGTCAACAATGGTGTTCCG GCTTCGGAGATTCGGTCTCAGGTTCAAATGCAGCCATTTGATGATGCTGTGGGGGGTAGTGCAGGGGAAGTTGCAATAAG GATCATTGGAGCTGGGGAGCATGATCAGAATCAGATTGGGGAAGTGGGGTTTGATGGTTGTGATAATCTGATGGGTGAGA GAAGAGGTGCTGGAATGTCTCCGTTGGACGATGATCCTGAGGGTCGTGGTGGAGCTGCGGTTAATGAGACGGTTCCTTTG GTGTCTTCATCGGCTTCGTTGGCAGGTAGTGTACAGGGTGATGGTGATGCTGCTGGGAATGGTGCAGAAAGTGACAGCAG GGGTTCATCATCCTACCAGAGGTATGATATTCAGCAGGTCGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGT TGTTGATTGTTTTCATCAGACAGCATTTACAAGGTTTCTTTGTCACTATTTGGATATCAGCTGTGATGTTCAAATCGAAT GAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTGTCTGTACTTGTCGGTATCTCTTTTGCTTTCATTCT TCAGGTCACATGCATTTACTGGTGGTATCGAAATGATGATCTCTTATACCCACTAATCATGCTTCCTCCTAGACCTACAC CTTTCTGGCATTCAGTATTCATCATCTTGGTCAATGATGTATTGGTGCGGCAAGCTGCAATGGTTTTCAAGTGTTTCCTG CTTATATATTACAAAAATGGCAAAGGTCATAACTTCCGCCGGCAGGCTCAAATGTTAACTTTGGTTGAGTACATGCTGCT GTTGTATCGTGCCTTATTGCCAACACTGGTTTGGTACCGGTTTTTCTTGAACAGAGATTATGGCAGTCTCTTTTCGTCAC TGACTACAGGGCTTTATTTAACTTTCAAGCTAACATCTATCATTGAGAAGGTCCGAGGCTTCATTTCTGCCTTCAAAGCA TTGTCAAGAAAGGATGTTCATTATGGGGTTTATGCTACAATGGAACAGGTCAATGCTGCTGGCGACCTATGTGCTATATG CCAGGAAAAGATGCATTCCCCAGTCTTGTTGCGCTGTAAACACATTTTTTGCGAGGAGTGTGTATCAGAATGGTTTGAGA GGGAAAGGACTTGCCCACTATGCAGAGCATTGGTGAAACCTGCTGATCTTCGGACCTTTGGAGACGGATCAACAAGTCTG TTTTTCCAGTTGTTTTAA
Protein sequence (LotjaGi1g1v0128900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METLDGNSDQYATVSSNSPSSSSGGFNSSDDHNNGSVSWYGMRLPSVNPLRSPLSLLLDYSGILTQTHDSGSVIVNNGVP ASEIRSQVQMQPFDDAVGGSAGEVAIRIIGAGEHDQNQIGEVGFDGCDNLMGERRGAGMSPLDDDPEGRGGAAVNETVPL VSSSASLAGSVQGDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTIWISAVMFKSN EIVKKQTALKGDRKVSVLVGISFAFILQVTCIYWWYRNDDLLYPLIMLPPRPTPFWHSVFIILVNDVLVRQAAMVFKCFL LIYYKNGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKA LSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSL FFQLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 206 | 206 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 14 | 485 | 472 | 1.3E-235 | – | |
| PANTHER | 14 | 485 | 472 | 1.3E-235 | – | |
| MobiDBLite | 134 | 153 | 20 | - | – | |
| MobiDBLite | 167 | 189 | 23 | - | – | |
| Phobius | 207 | 234 | 28 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 235 | 254 | 20 | - | – | |
| Phobius | 255 | 276 | 22 | - | – | |
| TMHMM | 255 | 277 | 23 | - | – | |
| Phobius | 277 | 295 | 19 | - | – | |
| Phobius | 296 | 323 | 28 | - | – | |
| TMHMM | 299 | 321 | 23 | - | – | |
| Phobius | 324 | 343 | 20 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 344 | 361 | 18 | - | – | |
| Phobius | 362 | 366 | 5 | - | – | |
| Phobius | 367 | 385 | 19 | - | – | |
| Phobius | 386 | 485 | 100 | - | – | |
| Gene3D | 404 | 478 | 75 | 1.2E-17 | ||
| SUPERFAMILY | 415 | 467 | 53 | 2.43E-18 | – | |
| Pfam | 422 | 465 | 44 | 1.6E-10 | – | |
| CDD | 423 | 462 | 40 | 1.59068E-27 | – | |
| SMART | 424 | 461 | 38 | 8.8E-8 | ||
| ProSiteProfiles | 424 | 462 | 39 | 13.876 | ||
| ProSitePatterns | 439 | 448 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0128900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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